4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 3x(p)
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List of experiments correlated with "3x(p)"  Help Download transcriptome of top 30
Score Experiment Correlation from
3x(p)		 Correlation to
3x(p)		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 3x(p) 1.00 >More info 1.00 >More info 2x two week old seedlings Original data
2 3x(m) 0.87 >More info 0.90 >More info 2x two week old seedlings Original data
3 4x 0.86 >More info 0.88 >More info 2x two week old seedlings Original data
4 low CO2 + dark 0.78 >More info 0.74 >More info normal CO2 + light Original data GEO bulk
5 low CO2 + light 0.77 >More info 0.74 >More info normal CO2 + light Original data GEO bulk
6 tetraploid 0.74 >More info 0.77 >More info diploid Original data GEO bulk
7 30m light -0.64 >More info -0.80 >More info before light whole seedlings Original data GEO bulk
8 mutant acs6E (single mutant) -0.75 >More info -0.69 >More info col control (single mutant) Original data GEO bulk
9 triploid female excess -0.66 >More info -0.76 >More info tetraploid Original data GEO bulk
10 1 h Light Total RNA -0.74 >More info -0.67 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
11 CMV-A2b mutant 0.72 >More info 0.67 >More info Mock-At Aerial tissues Original data GEO bulk
12 sfr6 drought -0.73 >More info -0.64 >More info WT drought All aerial tissue Original data GEO bulk
13 shoot-10 μM DEX- 6 hr 0.76 >More info 0.61 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
14 shoot-10 μM DEX- 12 hr 0.75 >More info 0.62 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
15 anti-sense for AtAOX1a 0.75 >More info 0.62 >More info WT Original data GEO bulk
16 sex1-3 0.73 >More info 0.60 >More info Col-WT leaves Original data GEO bulk
17 WT (Col) glucose -0.73 >More info -0.60 >More info WT (Col) glucose seedlings Original data GEO bulk
18 mutant acs2B (single mutant) -0.73 >More info -0.59 >More info col control (single mutant) Original data GEO bulk
19 OsRLCK253 expressing -0.72 >More info -0.59 >More info WT seedlings Original data GEO bulk
20 35S::MBF1c 0.73 >More info 0.57 >More info control Original data GEO bulk
21 penta mutant (higher order mutant) 0.70 >More info 0.60 >More info col control (higher order mutant) Original data GEO bulk
22 OsSAP11 expressing -0.70 >More info -0.57 >More info WT seedlings Original data GEO bulk
23 pip3 At2g19270 TDNA 9 0.66 >More info 0.60 >More info Col-0 whole plant Original data GEO bulk
24 seedling 1.5h after HZE atm-1 0.69 >More info 0.57 >More info seedling day 1 unirradiated atm-1 1.5h Original data
25 shoot-10 μM DEX- 24hr 0.66 >More info 0.59 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
26 Night Time Treatment -0.68 >More info -0.56 >More info Night Time Control 1hr white light pulse aerial rosette Original data
27 PNO8 12 h 0.56 >More info 0.68 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
28 6h volatiles Sp. HRO-C48 0.66 >More info 0.58 >More info 6h untreated whole seedling Original data GEO bulk
29 1 h Light IP RNA -0.66 >More info -0.58 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
30 WT drought 0.58 >More info 0.66 >More info WT control All aerial tissue Original data GEO bulk
31 flu dark 8hours/30 minute light 0.66 >More info 0.58 >More info col dark 8hours/30 minute light Original data GEO bulk
32 4h decapitation -0.61 >More info -0.62 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
33 pmr5 pmr6 0.70 >More info 0.52 >More info Col-0 Original data GEO bulk
34 Whole root - S 12H -0.74 >More info -0.48 >More info Whole root - S 0H Original data GEO bulk
35 vtc2 mature somatic embryo 0.61 >More info 0.59 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
36 wavy 0.65 >More info 0.54 >More info WT Original data GEO bulk
37 M6PR transgenic 0mM NaCl 0.70 >More info 0.49 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
38 Day Time Treatment -0.58 >More info -0.61 >More info Day Time Control 1hr white light pulse aerial rosette Original data
39 4C 1h 0.56 >More info 0.63 >More info 4C 0h Original data GEO bulk
40 Shoot dark control 7h 0.64 >More info 0.54 >More info Shoot light control 7 h non-submerged dark condition whole shoot Original data GEO bulk
41 Ws 100mM NaCl 0.67 >More info 0.51 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
42 Ws leaf 100mM NaCl 0.67 >More info 0.51 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
43 mutant acs4A (single mutant) -0.69 >More info -0.49 >More info col control (single mutant) Original data GEO bulk
44 Whole root - S 24H -0.71 >More info -0.46 >More info Whole root - S 0H Original data GEO bulk
45 siliques AtHb1 control 0.63 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
46 hepta mutant (higher order mutant) 0.70 >More info 0.45 >More info col control (higher order mutant) Original data GEO bulk
47 Col-0 (t-zeatin 3 h) -0.63 >More info -0.52 >More info Col-0 Original data Cytokinin treatment of seedlings
48 cs26 short-day -0.66 >More info -0.48 >More info Leaves-WT-SD leaf Original data GEO bulk
49 10min Reillumination Total RNA -0.53 >More info -0.61 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
50 leaf blade in D 0.67 >More info 0.47 >More info leaf blade in WL leaf blades Original data GEO bulk
51 til1-1 22C 0.70 >More info 0.44 >More info Col-0 22C Original data GEO bulk
52 WT (Col-0) inflorescence drought day 4 0.67 >More info 0.46 >More info WT (Col-0) inflorescence well-watered day 4 Unopen flower buds Original data GEO bulk
53 2hr transitory KNO3 PrR cell 0.65 >More info 0.48 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
54 +1.6 mM Tween 20 1 h. 0.59 >More info 0.54 >More info +distilled water 1 h. Original data GEO bulk
55 oligomycin 1 h 0.73 >More info 0.40 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
56 Osmotic Stress 24 h (root) 0.62 >More info 0.51 >More info Stress mock 24 h (root) Original data Stress treatments
57 Col-0 35S:MBS1 HL 3h -0.65 >More info -0.47 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
58 high-R:FR bud axillary -0.59 >More info -0.53 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
59 Shoot dark control 24h 0.60 >More info 0.52 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
60 rGRF 0.50 >More info 0.62 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
61 hai1-2 low water potential 0.60 >More info 0.50 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
62 SOS1 0mM NaCl 0.67 >More info 0.43 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
63 seedling 1.5h after HZE WT 0.72 >More info 0.38 >More info seedling day 1 unirradiated WT 1.5h Original data
64 Dark 6h ivd 0.68 >More info 0.42 >More info 0h ivd Original data
65 ptpks2 -0.45 >More info -0.65 >More info Col-WT leaves Original data GEO bulk
66 Leafminer damaged seedlings 0.53 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
67 leaf blade in FRD 0.64 >More info 0.45 >More info leaf blade in WL leaf blades Original data GEO bulk
68 M6PR transgenic leaf 0mM NaCl 0.65 >More info 0.44 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
69 60m light -0.47 >More info -0.62 >More info before light whole seedlings Original data GEO bulk
70 HARAP aerobic -0.48 >More info -0.61 >More info WT aerobic aerobic Original data GEO bulk
71 WT (Col-0) inflorescence drought day 5 0.64 >More info 0.44 >More info WT (Col-0) inflorescence well-watered day 5 Unopen flower buds Original data GEO bulk
72 Shoot submergence 24h 0.65 >More info 0.43 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
73 bHLH122 ox -0.49 >More info -0.59 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
74 hen1 -0.67 >More info -0.40 >More info Ler Original data GEO bulk
75 oas-a1.1 root -0.62 >More info -0.45 >More info WT-Untreated Root Original data GEO bulk
76 Col0-PsmES4326-24hpi 0.46 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
77 Heat shock optimum 0.42 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
78 4d red light grown hmr-5 seedlings 0.70 >More info 0.37 >More info 4d red light grown WT(Col-0) seedlings Original data
79 Salt Stress 24 h (root) 0.71 >More info 0.35 >More info Stress mock 24 h (root) Original data Stress treatments
80 seedling 24h after Gamma WT -0.41 >More info -0.65 >More info seedling day 2 unirradiated WT 24h Original data
81 Col(gl) 0mM NaCl 0.62 >More info 0.43 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
82 Col(gl) leaf 0mM NaCl 0.62 >More info 0.43 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
83 SA 4mM 0.42 >More info 0.63 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
84 cpr5scv1 0.48 >More info 0.57 >More info WT(COL) Original data GEO bulk
85 iron minus 0 h 0.64 >More info 0.40 >More info iron +0 h root Original data GEO bulk
86 pmr5 0.67 >More info 0.37 >More info Col-0 rosette Original data GEO bulk
87 Red/FR Light 4 h 0.54 >More info 0.49 >More info FarRed Light 4 h Original data Light treatments
88 1.5 hr ammonium 0.70 >More info 0.33 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
89 A. thaliana-A. lyrata hybrid -0.52 >More info -0.51 >More info A. thaliana mature leaves before flowering Original data GEO bulk
90 WT cold -0.54 >More info -0.49 >More info WT control All aerial tissue Original data GEO bulk
91 pepr1-1 Pepr2-3 +Pep2 2h -0.64 >More info -0.39 >More info WT +Pep2 2h Pep2 Original data GEO bulk
92 CHLM overexpression -0.66 >More info -0.37 >More info Col-0 estr green tissue Original data GEO bulk
93 short 12-degree- -0.26 >More info -0.77 >More info control short Original data GEO bulk
94 21h-DC3000 hrpA -0.44 >More info -0.59 >More info 21h-DC3000 leaves Original data GEO bulk
95 seedling 24h after Gamma atm-1 -0.41 >More info -0.62 >More info seedling day 2 unirradiated atm-1 24h Original data
96 bak1-3 +Pep2 2h 0.59 >More info 0.43 >More info WT +Pep2 2h Pep2 Original data GEO bulk
97 edr1 36 h powdery mildew 0.64 >More info 0.38 >More info Col-0 36 h powdery mildew Original data GEO bulk
98 short 17-degree- -0.30 >More info -0.72 >More info control short Original data GEO bulk
99 Col-0 2HS 0.61 >More info 0.40 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
100 whole roots 140 mM NaCl 30 minutes 0.65 >More info 0.36 >More info whole roots standard Original data GEO bulk
101 arr10 arr12 -0.70 >More info -0.31 >More info DMSO--WT DMSO roots Original data GEO bulk
102 hog1-7 -0.56 >More info -0.45 >More info wt whole seedling Original data GEO bulk
103 pmr5 0.60 >More info 0.41 >More info Col-0 Original data GEO bulk
104 Apex mir-3TCP 14DAS -0.71 >More info -0.30 >More info Apex Col 14DAS Original data GEO bulk
105 Differentiation 24h -0.64 >More info -0.37 >More info Differentiation 0h leaves Original data
106 sdg8-2 mutant -0.59 >More info -0.42 >More info wild type leaf Original data GEO bulk
107 mutant-line774 -0.56 >More info -0.45 >More info WT-control whole plant Original data GEO bulk
108 WT NAA 1h 0.40 >More info 0.61 >More info WT 0h Leaf tissue Original data GEO bulk
109 P.p 6hai 0.60 >More info 0.40 >More info At-Control roots Original data GEO bulk
110 WT Na2S -0.53 >More info -0.47 >More info WT water Na2S leaf Original data GEO bulk
111 pepr1-1 Pepr2-3 +Pep2 10h -0.63 >More info -0.37 >More info WT +Pep2 10h Pep2 Original data GEO bulk
112 WT hypoxia 0.57 >More info 0.43 >More info WT normoxia whole rosette Original data
113 petiole in FRD 0.59 >More info 0.41 >More info petiole in WL petioles Original data GEO bulk
114 Col ozone 3h 0.50 >More info 0.50 >More info Col clean-air 3h ozone Original data GEO bulk
115 seedlings-week-old RECA1-overexpressing
transgenic		 0.56 >More info 0.44 >More info seedlings-week-old Col-0 seedlings Original data
116 elf3-7-16ºC -0.57 >More info -0.43 >More info WT-16ºC Original data GEO bulk
117 Col-0 C2H4 24h 0.66 >More info 0.34 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
118 Mutant iaa5_6_19 -0.53 >More info -0.47 >More info Col Original data GEO bulk
119 ga1-3 SCL3OE -0.52 >More info -0.48 >More info ga1-3 whole root Original data
120 axr2 -0.51 >More info -0.48 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
121 detached inflorescences 24h 0.67 >More info 0.32 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
122 mutant-line1135 -0.60 >More info -0.39 >More info WT-control whole plant Original data GEO bulk
123 Octopus overexpressor 35SDYG25 0.57 >More info 0.42 >More info WS Original data GEO bulk
124 ddm1-12 -0.60 >More info -0.39 >More info wt whole seedling Original data GEO bulk
125 WT+chitooctaose 0.50 >More info 0.49 >More info WT+water chitooctaose seedlings Original data GEO bulk
126 15m light -0.54 >More info -0.44 >More info before light whole seedlings Original data GEO bulk
127 FLIGHT TAGESB plate6 SHOOTS 0.53 >More info 0.45 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
128 petiole in D 0.60 >More info 0.38 >More info petiole in WL petioles Original data GEO bulk
129 Red Light 4 h 0.48 >More info 0.50 >More info White Light 4 h Original data Light treatments
130 LTN005-2 TSA -0.57 >More info -0.40 >More info LTN012-2 Mock Original data
131 vtc2 (I) 0.54 >More info 0.43 >More info Col (I) rosette Original data GEO bulk
132 col 24h4c set4 -0.51 >More info -0.46 >More info col 0h4c cold-treated moved to a 4C chamber for 24h whole seedlings Original data
133 camta1/2/3 warm 0.65 >More info 0.32 >More info WT warm entire aerial part Original data GEO bulk
134 pepr1-1 Pepr2-3 untreated -0.60 >More info -0.37 >More info WT untreated untreated Original data GEO bulk
135 oas-a1.1 Cd 18h 0.42 >More info 0.55 >More info Cd 18h root Root Original data GEO bulk
136 ape2 high light 0.38 >More info 0.59 >More info Ws-2 high light Original data GEO bulk
137 seedlings protease IV 0.56 >More info 0.40 >More info seedlings nontreated control whole seedling Original data
138 FLIGHT TAGES 2B plate6 HYPOCOTYLS 0.56 >More info 0.40 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
139 Col leaf 100mM NaCl 0.59 >More info 0.37 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
140 Col leaf 100mM NaCl 0.59 >More info 0.37 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
141 mbd6 mutant thaliana 10-day-old seedling 0.61 >More info 0.35 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
142 Col 100mM NaCl 0.59 >More info 0.37 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
143 Whole root - S 48H -0.67 >More info -0.29 >More info Whole root - S 0H Original data GEO bulk
144 miR mutant (higher order mutant) 0.61 >More info 0.35 >More info col control (higher order mutant) Original data GEO bulk
145 WT AntimycinA 3h 0.59 >More info 0.37 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
146 Col-0 SA 0.56 >More info 0.39 >More info Col-0 Original data GEO bulk
147 Atss3 Light4 -0.54 >More info -0.41 >More info Atss3 Dark0.5 Original data GEO bulk
148 cngc4 0.57 >More info 0.38 >More info Ws-2 Seedlings Original data GEO bulk
149 npr1 sni1 brca2a SA -0.50 >More info -0.45 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
150 GST 4 h (leaf) 0.45 >More info 0.50 >More info Mock 4 h (leaf) Original data Elicitor treatments
151 Atss3 Light1 -0.45 >More info -0.50 >More info Atss3 Dark0.5 Original data GEO bulk
152 ago4-1 0.54 >More info 0.40 >More info WT La-er whole plants Original data GEO bulk
153 sid2-1 cold -0.39 >More info -0.55 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
154 opr3 JA 0.5 h 0.40 >More info 0.54 >More info opr3 0 h Original data GEO bulk
155 Leafminer locally damaged thaliana seedlings 0.53 >More info 0.41 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
156 P.p 10.5hai 0.65 >More info 0.29 >More info At-Control roots Original data GEO bulk
157 WT H2O2 3h 0.53 >More info 0.41 >More info WT water 3h 3h_H2O2 Original data GEO bulk
158 efr-1 untreated -0.71 >More info -0.23 >More info WT untreated untreated Original data GEO bulk
159 UV Stress 24 h (shoot) 0.51 >More info 0.43 >More info Stress mock 24 h (shoot) Original data Stress treatments
160 TA induced 0.60 >More info 0.34 >More info Methanol TA Suspension cells Original data GEO bulk
161 lib -0.53 >More info -0.41 >More info WT whole seedling Original data GEO bulk
162 Atss3 Dark4 -0.52 >More info -0.42 >More info Atss3 Dark0.5 Original data GEO bulk
163 whole roots 140 mM NaCl 32 hour 0.52 >More info 0.42 >More info whole roots standard Original data GEO bulk
164 Leafminer systemically damaged thaliana seedlings 0.51 >More info 0.43 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
165 Seedling-HeatStressed TOTALmRNA 0.64 >More info 0.30 >More info Seedling-control TOTALmRNA seedling Original data
166 SCR-GR Time 12H Dex 0.54 >More info 0.39 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
167 Ibuprofen 3 h -0.40 >More info -0.53 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
168 myb61 xylem 0.37 >More info 0.56 >More info wt xylem xylem Original data GEO bulk
169 whole roots 140 mM NaCl 1 hour 0.62 >More info 0.31 >More info whole roots standard Original data GEO bulk
170 SAM SE 35S:AGL15 0.61 >More info 0.32 >More info SAM SE Col Original data GEO bulk
171 frb1 mutant 0.70 >More info 0.23 >More info WT whole seedling Original data GEO bulk
172 IAA 0.5 h 0.33 >More info 0.60 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
173 Laer pretreat GA Flg22 1h 0.22 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
174 phyABCDE 4-day dark- 2 hours Rc50 0.43 >More info 0.50 >More info phyABCDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
175 vte1-1 3d vernalization -0.65 >More info -0.27 >More info WT 3d vernalization Original data GEO bulk
176 Whole root - S 72H -0.67 >More info -0.25 >More info Whole root - S 0H Original data GEO bulk
177 Protoplast Induced 0.38 >More info 0.54 >More info Uninduced Original data GEO bulk
178 CMV-WT 0.61 >More info 0.31 >More info Mock-At Aerial tissues Original data GEO bulk
179 EBE-XVE +estradiol -0.58 >More info -0.34 >More info WT-Col-0 +estradiol shoot Original data GEO bulk
180 Col leaves 120h LT -0.61 >More info -0.31 >More info Col leaves 0h LT 12h 9-11th adult leaves Original data
181 Seedling-HeatStressed POLYSOMESmRNA 0.62 >More info 0.30 >More info Seedling-control POLYSOMESmRNA seedling Original data
182 FarRed Light 4 h -0.35 >More info -0.57 >More info White Light 4 h Original data Light treatments
183 Col-0 RNAi-MBS2/mbs1-1 HL 3h -0.54 >More info -0.37 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
184 camta1/3 warm 0.54 >More info 0.37 >More info WT warm entire aerial part Original data GEO bulk
185 Differentiation 36h -0.65 >More info -0.26 >More info Differentiation 0h leaves Original data
186 Heat 2 days recovery 0.56 >More info 0.35 >More info Mock 2 days recovery seedling Original data GEO bulk
187 oligomycin 4 h 0.61 >More info 0.30 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
188 Dark 6h wt 0.60 >More info 0.31 >More info 0h wt Original data
189 WT 30μM arsenate 8 hours. 0.56 >More info 0.34 >More info WT control (not supplemented). Original data
190 INA 0.52 >More info 0.38 >More info CK INA seedling Original data
191 essp4/sdg8-5 mutant -0.54 >More info -0.36 >More info wild type leaf Original data GEO bulk
192 gun4-1 0.62 >More info 0.28 >More info WT Col-0 seedling Original data GEO bulk
193 triplod male excess -0.50 >More info -0.40 >More info tetraploid Original data GEO bulk
194 CBF3 0mM NaCl 0.60 >More info 0.30 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
195 camta2/3 warm 0.55 >More info 0.34 >More info WT warm entire aerial part Original data GEO bulk
196 cs26 long day 0.55 >More info 0.34 >More info Leaves-WT-LD leaf Original data GEO bulk
197 ebs Pool 0.68 >More info 0.21 >More info Ler Pool seedling Original data GEO bulk
198 1h +Pi -0.52 >More info -0.37 >More info 1h -Pi root Original data GEO bulk
199 C24 24h cold -0.65 >More info -0.24 >More info Col 24h cold leaf Original data GEO bulk
200 Differentiation 48h -0.65 >More info -0.24 >More info Differentiation 0h leaves Original data
201 mkk1/mkk2 control rep 0.54 >More info 0.35 >More info Col-0 Time 0 rep Original data GEO bulk
202 COL-0-Fe--shoot -0.50 >More info -0.39 >More info COL-0-Ctrl--shoot shoot Original data
203 Col-0 DCA 6d 0.36 >More info 0.53 >More info Col-0 MOCK 6d Original data GEO bulk
204 agb1 -ABA LF 0.32 >More info 0.57 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
205 edr1 18 h powdery mildew 0.55 >More info 0.33 >More info Col-0 18 h powdery mildew Original data GEO bulk
206 Rose Bengal 0.5 uM 0.33 >More info 0.55 >More info Control RB and PER Rose Bengal Original data
207 A2hsfa1-ox in quadruple mutant -0.65 >More info -0.23 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
208 2hr continuous KNO3 PrR cell 0.62 >More info 0.26 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
209 2 hr Hypoxia Total RNA 0.60 >More info 0.28 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
210 Col-0 DEX Shade 0.50 >More info 0.38 >More info Col-0 DEX WL seedlings Original data
211 arp6-10 12 ºC -0.51 >More info -0.37 >More info Col-0 12 ºC whole seedlings Original data GEO bulk
212 rosette leaves fdh 0.69 >More info 0.19 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
213 IMI 4mM 0.50 >More info 0.37 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
214 Differentiation 12h -0.53 >More info -0.33 >More info Differentiation 0h leaves Original data
215 BLM+INA 0.55 >More info 0.31 >More info CK BLM and INA seedling Original data
216 Mutant coi1(leaf) -0.59 >More info -0.27 >More info Col-0 (leaf) Original data GEO bulk
217 npr1 sni1 ssn2 -0.52 >More info -0.33 >More info npr1 sni1 water water seedling Original data GEO bulk
218 atmospheric CO2 low Mg shoot 0.56 >More info 0.29 >More info atmospheric CO2 normal Mg shoot Shoot Original data
219 whole roots 140 mM NaCl 4 hour 0.30 >More info 0.55 >More info whole roots standard Original data GEO bulk
220 04h Col-0 -0.57 >More info -0.28 >More info 00h Col-0 Original data GEO bulk
221 WT+H2O2 0.57 >More info 0.28 >More info WT H2O2 Original data GEO bulk
222 gai Control 0.62 >More info 0.23 >More info Laer Control leaf discs Original data GEO bulk
223 2 hr Hypoxia IP RNA 0.56 >More info 0.28 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
224 roots bhlh100/101 0uM Fe 0.51 >More info 0.33 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
225 ein2-1 9 hpi A. brassicicola 0.51 >More info 0.33 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
226 Light 4h steady-state -0.54 >More info -0.30 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
227 Dark 3day ivd 0.55 >More info 0.29 >More info 0h ivd Original data
228 root Dosed gold 0.56 >More info 0.28 >More info root No gold .125 mM gold 24 h roots Original data
229 gpa1-4/agb1-2 clean-air 3h 0.56 >More info 0.28 >More info Col clean-air 3h clean-air Original data GEO bulk
230 10mM sucrose -0.51 >More info -0.33 >More info control Whole seedling Original data GEO bulk
231 0.125 mM gold 24 h 0.56 >More info 0.28 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
232 csn3-1 dark -0.50 >More info -0.34 >More info WT dark Original data GEO bulk
233 abi1 hypocotyl 0.30 >More info 0.54 >More info Ler hypocotyl hypocotyl Original data GEO bulk
234 Col-0 under 4 days salt 0.57 >More info 0.27 >More info Col-0 under control 4 days salt treatment rosette Original data
235 Root dark control 24h 0.56 >More info 0.27 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
236 Root submergence 7h 0.51 >More info 0.32 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
237 CMP 4hr 0.57 >More info 0.26 >More info Acetone 4hr root Original data GEO bulk
238 tfl1-1-23ºC 0.66 >More info 0.16 >More info WT-23ºC Original data GEO bulk
239 root stele 40 mM NaCls 0.51 >More info 0.31 >More info root stele Original data GEO bulk
240 camta1-2 0.31 >More info 0.51 >More info Col-0-WT Original data GEO bulk
241 Col BTH 0.15 >More info 0.67 >More info Col rosettes Original data GEO bulk
242 Apex BLS>>TCP4 14DAS -0.69 >More info -0.13 >More info Apex Col 14DAS Original data GEO bulk
243 MYB29 OE -0.57 >More info -0.25 >More info WT for MYB29/76 Original data GEO bulk
244 seedling h S Exp -0.21 >More info -0.61 >More info seedling -S Exp seedling Original data
245 AtMinD1 Temporal-induction 0.53 >More info 0.28 >More info Control whole plant Original data GEO bulk
246 camta1/2/3 24h cold 0.54 >More info 0.27 >More info WT 24h cold 24h cold entire aerial part Original data GEO bulk
247 Heat no recovery -0.55 >More info -0.26 >More info Mock no recovery seedling Original data GEO bulk
248 35S::CYC 0.50 >More info 0.31 >More info thaliana control secondary inflorescence Original data
249 CAX1/CAX3 mutant 0.67 >More info 0.14 >More info Col whole plant Original data GEO bulk
250 efr-1 +elf18 10h -0.50 >More info -0.31 >More info WT +elf18 10h elf18 Original data GEO bulk
251 eds16 whole leaf 0h UI -0.29 >More info -0.52 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
252 Kas-1 -Fe 24h -0.25 >More info -0.56 >More info Kas-1 +Fe 24h roots Original data GEO bulk
253 Kas -Fe 24h Roots -0.25 >More info -0.56 >More info Kas +Fe 24h Roots Original data GEO bulk
254 Light 4h polysome-bound -0.56 >More info -0.24 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
255 Dark 6h hml 0.53 >More info 0.27 >More info 0h hml Original data
256 rdo3 siliques 0.58 >More info 0.22 >More info WT Ler siliques Original data GEO bulk
257 Dark 1day wt 0.58 >More info 0.22 >More info 0h wt Original data
258 hni9 low nitrogen -0.52 >More info -0.27 >More info WT low nitrogen roots Original data GEO bulk
259 P.p 30hai 0.55 >More info 0.24 >More info At-Control roots Original data GEO bulk
260 tZ -0.60 >More info -0.19 >More info DMSO--WT trans-zeatin roots Original data GEO bulk
261 Got7 UV 0.20 >More info 0.59 >More info Got7 mock UV seedling Original data
262 agb1 gpa1 -ABA LF 0.28 >More info 0.51 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
263 chito-tetramer 0.50 >More info 0.28 >More info Col Mock Original data GEO bulk
264 tor mutant glucose 0.55 >More info 0.23 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
265 mkk1/mkk2 24h BTH rep 0.53 >More info 0.25 >More info Col-0 24h BTH rep Original data GEO bulk
266 ahg2-1sid2-2 -0.28 >More info -0.50 >More info WT (Col) control Original data GEO bulk
267 WT 30μM phosphate 8 hours. -0.22 >More info -0.56 >More info WT control (not supplemented). Original data
268 Col-0 low oxygen 0.55 >More info 0.22 >More info Col-0 control low oxygen root Original data GEO bulk
269 Col-7 Sucrose -0.51 >More info -0.26 >More info col-7 Original data GEO bulk
270 aba2 1% sucrose 12-day-old 0.51 >More info 0.26 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
271 OE WRKY63.3 high light 0.50 >More info 0.27 >More info OE WRKY40.4 high light high light for 1h at 1000 μE m-2s-1 leaf Original data GEO bulk
272 nhx5-1/nhx6 0.26 >More info 0.51 >More info WT Rosette leaf Original data GEO bulk
273 rcf1-1 cold 24h 0.54 >More info 0.22 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
274 S58-2 0.50 >More info 0.26 >More info wt Original data GEO bulk
275 gh3.5-1D 48 hpi 0.51 >More info 0.25 >More info Col-0 uninoculated Original data GEO bulk
276 CMP 24hr 0.54 >More info 0.22 >More info Acetone 24hr root Original data GEO bulk
277 6h +Pi -0.51 >More info -0.25 >More info 6h -Pi root Original data GEO bulk
278 AsAKiin11 T2 0.19 >More info 0.57 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
279 bak1-3 untreated -0.50 >More info -0.25 >More info WT untreated untreated Original data GEO bulk
280 Apex octa 18DAS -0.57 >More info -0.18 >More info Apex Col 14DAS Original data GEO bulk
281 proline -0.51 >More info -0.24 >More info noneHS Original data GEO bulk
282 Inflorescence ngaquad -0.52 >More info -0.22 >More info Inflorescence wt Original data GEO bulk
283 bak1-3 +Pep2 10h 0.60 >More info 0.14 >More info WT +Pep2 10h Pep2 Original data GEO bulk
284 AtMinD1 Prolonged-induction 0.54 >More info 0.20 >More info Control whole plant Original data GEO bulk
285 Root submergence 24h 0.50 >More info 0.24 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
286 bri1-116 0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
287 WT-16ºC -0.52 >More info -0.21 >More info WT-23ºC Original data GEO bulk
288 SPT4-R3 seedlings0 DAS -0.52 >More info -0.21 >More info Col-0 seedlings0 DAS seedlings Original data
289 Nicotinamide-69hr 0.55 >More info 0.18 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
290 amiR-tor induced 3d -0.57 >More info -0.16 >More info amiR-tor 3d C 3 days estradiol-treated seedlings Original data GEO bulk
291 Uniconazole 12 h 0.67 >More info 0.05 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
292 ms35 silique stage 5 -0.59 >More info -0.13 >More info Ler .5 anther and filament Original data GEO bulk
293 24h volatiles Sp. HRO-C48 0.54 >More info 0.18 >More info 24h untreated whole seedling Original data GEO bulk
294 anac017-2 AntimycinA 3h -0.52 >More info -0.20 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
295 rosette leaves lcr 0.59 >More info 0.13 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
296 piffq FR 1h -0.52 >More info -0.19 >More info WT FR 1h whole seedling Original data GEO bulk
297 del1-1 5dpi 0.50 >More info 0.21 >More info Col-0 5dpi mature fully expanded leaves Original data GEO bulk
298 Shoot apex inflorescence (after bolting) 0.06 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
299 seedling 3h after HZE WT 0.68 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
300 WT Red light 18h -0.50 >More info -0.20 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
301 opr3 OPDA 2 h 0.52 >More info 0.18 >More info opr3 0 h Original data GEO bulk
302 Leaf 0.55 >More info 0.14 >More info Control for tissue data leaf Original data GEO bulk
303 M6PR transgenic 100mM NaCl 0.52 >More info 0.17 >More info Ws 100mM NaCl 100mM NaCl leaf Original data GEO bulk
304 Mutant ap3-6(shoot apex) -0.51 >More info -0.18 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
305 shoot hypoxia pCER5 0.51 >More info 0.18 >More info shoot hypoxia total Original data GEO bulk
306 gul2-1 bri1-5 mutant 0.50 >More info 0.19 >More info WT 7 day-old whole seedlings Original data
307 Col-0 5dpi -0.54 >More info -0.14 >More info Col-0 5d uininfected mature fully expanded leaves Original data GEO bulk
308 Nicotinamide-73hr 0.58 >More info 0.10 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
309 cdpk6-yfp -0.10 >More info -0.58 >More info Kan seedlings Original data GEO bulk
310 siliques WT hypoxia 0.66 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
311 FLIGHT TAGESB plate 0.54 >More info 0.13 >More info GROUND CONTROL TAGESB plate Original data
312 Col-Luc WT 3h antimycin A 0.51 >More info 0.16 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
313 Cd 18h root -0.55 >More info -0.10 >More info WT-Untreated Root Original data GEO bulk
314 ORS1 induced 0.50 >More info 0.15 >More info mock-induced rosette leaves Original data GEO bulk
315 pip3 At2g19270 TDNA 6h-5 0.53 >More info 0.11 >More info Col-0 whole plant Original data GEO bulk
316 WT (Col-0) inflorescence well-watered day 10 0.50 >More info 0.14 >More info WT (Col-0) inflorescence well-watered day 0 Unopen flower buds Original data GEO bulk
317 2hr transitory KNO3 SR cell 0.50 >More info 0.14 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
318 root callus inducing medium 96 h -0.56 >More info -0.07 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
319 Control KNO3 roots - 8hours 0.51 >More info 0.12 >More info Control KCl roots - 8hours 5mM KNO3 on both sides for 8 hours roots Original data GEO bulk
320 Shoot submergence 7h 0.62 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
321 root callus inducing medium 48 h -0.53 >More info -0.09 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
322 Nicotinamide-65hr 0.56 >More info 0.05 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
323 root hypoxia total 0.58 >More info 0.03 >More info root control total Original data GEO bulk
324 amiR-tor induced 6d -0.51 >More info -0.10 >More info amiR-tor 6d C 6 days estradiol-treated seedlings Original data GEO bulk
325 NahG -0.01 >More info -0.60 >More info Col-0 Leaves Original data GEO bulk
326 Infected Col-0 leaf -0.59 >More info -0.01 >More info Mock Col-0 leaf F. oxysporum leaf Original data GEO bulk
327 seedling 12h after Gamma WT -0.50 >More info -0.10 >More info seedling day 1 unirradiated WT 12h Original data
328 toc1-1-77hr 0.51 >More info 0.09 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
329 toc1-1-73hr 0.50 >More info 0.10 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
330 IAA7mII over-expressor IAA Treated -0.09 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
331 atsf1-2 mutant seedling -0.53 >More info -0.06 >More info Col-0 seedling seedlings Original data
332 epiF3 -0.50 >More info -0.09 >More info WT Col-0 aerial part Original data
333 myb3 myb3r4d 0.63 >More info -0.04 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
334 dde2-2 9 hpi A. brassicicola 0.50 >More info 0.07 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
335 rdr6-11 0.54 >More info 0.03 >More info Col-0 aerial tissue Original data
336 seed germinating in countinuous light 24h SL -0.10 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
337 AgNO3 3 h 0.58 >More info -0.02 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
338 CCA1-ox 6am non-polysomal 0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
339 Mutant arf2-6 -0.53 >More info -0.00 >More info Col Original data GEO bulk
340 SCR-GR Time 1H Dex 0.52 >More info 0.01 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
341 sfr6 control -0.60 >More info 0.08 >More info WT control All aerial tissue Original data GEO bulk
342 4d red light grown hmr-22 seedlings 0.71 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
343 Mutant arf19-1 (IAA) -0.53 >More info 0.05 >More info Col (IAA) Original data GEO bulk
344 glk1 glk2 GLK1-GR +DEX 4h 0.53 >More info -0.05 >More info glk1 glk2 GLK1-GR mock 4h dexamethasone whole seedlings Original data GEO bulk
345 Root P recovery 0.51 >More info -0.04 >More info Root -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
346 roottip hypoxia total 0.56 >More info -0.11 >More info roottip control total Original data GEO bulk
347 Indigo Carmine 0.5 uM -0.08 >More info 0.52 >More info Control MV and IC Indigo Carmine Original data
348 AFB1 0h 0.54 >More info -0.15 >More info Col 0h Leaf Original data GEO bulk
349 12h-DC3000 avrRpm1 0.50 >More info -0.11 >More info 12h-DC3000 leaves Original data GEO bulk
350 WT Shoot Hypoxia 0.52 >More info -0.14 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
351 phyB mutant 16C 4hrs 0.61 >More info -0.25 >More info 16C 4hs whole plant excluding roots Original data GEO bulk
352 Mutant axr3-1 (IAA) 0.57 >More info -0.26 >More info Col (IAA) Original data GEO bulk
353 control leaf (cmt 5d) -0.57 >More info 0.36 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
354 WT roots - Fe 0.62 >More info -0.52 >More info WT roots + Fe Roots Original data GEO bulk
355 ARR22-ox -0.53 >More info 0.48 >More info Col-0 Original data Cytokinin treatment of seedlings