4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on root protoplasts 40 mM NaCl
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List of experiments correlated with "root protoplasts 40 mM NaCl"  Help Download transcriptome of top 30
Score Experiment Correlation from
root protoplasts 40 mM NaCl		 Correlation to
root protoplasts 40 mM NaCl		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 root protoplasts 40 mM NaCl 1.00 >More info 1.00 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
2 root cells columella root cap -Fe 0.86 >More info 0.78 >More info whole roots standard Original data GEO bulk
3 root cells -Fe 0.83 >More info 0.78 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
4 protoplasted roots pH4.6 0.83 >More info 0.77 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
5 root cells stele -Fe 0.83 >More info 0.75 >More info whole roots standard Original data GEO bulk
6 root cells endodermis and quiescent center -Fe 0.78 >More info 0.71 >More info whole roots standard Original data GEO bulk
7 Selenate (root) 0.69 >More info 0.73 >More info Ws (root) Original data GEO bulk
8 Root Selenate 0.69 >More info 0.73 >More info Root control 40 micromolar selenate Root Original data GEO bulk
9 Cycloheximide 3 h 0.75 >More info 0.63 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
10 Protoplast Induced 0.65 >More info 0.72 >More info Uninduced Original data GEO bulk
11 aba1 hypocotyl 0.69 >More info 0.66 >More info Ler hypocotyl hypocotyl Original data GEO bulk
12 root stele 40 mM NaCls 0.73 >More info 0.62 >More info root stele Original data GEO bulk
13 FLIGHT TAGESB plate6 ROOTS 0.61 >More info 0.74 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
14 rosette Dark Wounded 0.65 >More info 0.67 >More info rosette Dark Control Original data GEO bulk
15 AgNO3 3 h 0.64 >More info 0.67 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
16 WT seedlings MV 0.65 >More info 0.65 >More info WT seedlings control Seedlings Original data GEO bulk
17 rosette Light Wounded 0.63 >More info 0.67 >More info rosette Light Control Original data GEO bulk
18 inhibitor A Treated 0.68 >More info 0.60 >More info Negative Control Original data GEO bulk
19 root cells epidermis and lateral root cap -Fe 0.68 >More info 0.60 >More info whole roots standard Original data GEO bulk
20 flu 0.66 >More info 0.61 >More info WT Col Original data GEO bulk
21 abi1 hypocotyl 0.56 >More info 0.71 >More info Ler hypocotyl hypocotyl Original data GEO bulk
22 inhibitor B Treated 0.61 >More info 0.66 >More info Negative Control Original data GEO bulk
23 9 hr Hypoxia 1 hr recovery Total RNA 0.63 >More info 0.61 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
24 WT+H2O2 0.55 >More info 0.68 >More info WT H2O2 Original data GEO bulk
25 IAA/inhibitor A Treated 0.67 >More info 0.55 >More info IAA Treated Original data GEO bulk
26 Roots Cd -0.62 >More info -0.60 >More info Roots control Cd Root Original data GEO bulk
27 IAA/inhibitor B Treated 0.60 >More info 0.62 >More info IAA Treated Original data GEO bulk
28 flu over-tAPX 0.62 >More info 0.59 >More info WT Col Original data GEO bulk
29 chito-tetramer 0.52 >More info 0.68 >More info Col Mock Original data GEO bulk
30 chito-octamer 0.52 >More info 0.68 >More info Col Mock Original data GEO bulk
31 Col-0 low oxygen 0.62 >More info 0.58 >More info Col-0 control low oxygen root Original data GEO bulk
32 9 hr Hypoxia 1 hr recovery IP RNA 0.64 >More info 0.55 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
33 WT 30μM arsenate 8 hours. 0.68 >More info 0.50 >More info WT control (not supplemented). Original data
34 2hr transitory KNO3 PrR cell 0.71 >More info 0.46 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
35 P.p 30hai 0.65 >More info 0.52 >More info At-Control roots Original data GEO bulk
36 TNT-seedlings 0.39 >More info 0.78 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
37 P.p 6hai 0.62 >More info 0.54 >More info At-Control roots Original data GEO bulk
38 Methyl Jasmonate 0.5 h 0.53 >More info 0.63 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
39 P.p 2.5hai 0.58 >More info 0.58 >More info At-Control roots Original data GEO bulk
40 2hr transitory KNO3 SR cell 0.65 >More info 0.50 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
41 WT 3H Cold 0.44 >More info 0.71 >More info WT control Original data GEO bulk
42 anac017-2 AntimycinA 3h -0.63 >More info -0.50 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
43 R. solani AG8 0.58 >More info 0.55 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
44 5-Triiodobenzoic acid3 h 0.49 >More info 0.64 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
45 WT-Dry 0.51 >More info 0.61 >More info WT-CK dehydration treatment 1h Original data
46 roottip hypoxia total 0.56 >More info 0.56 >More info roottip control total Original data GEO bulk
47 WT flg22 2h 0.56 >More info 0.56 >More info WT 0h Leaf tissue Original data GEO bulk
48 Salt Stress 24 h (root) 0.63 >More info 0.49 >More info Stress mock 24 h (root) Original data Stress treatments
49 SCR-GR Time 12H Dex 0.49 >More info 0.63 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
50 9 hr Hypoxia Total RNA 0.56 >More info 0.55 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
51 Heat shock optimum 0.46 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
52 P.p 10.5hai 0.58 >More info 0.53 >More info At-Control roots Original data GEO bulk
53 2hr continuous KNO3 SR cell 0.63 >More info 0.48 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
54 Bur-0-30min IAA 0.54 >More info 0.57 >More info Bur-0h IAA whole plant Original data GEO bulk
55 toc1-1-53hr 0.59 >More info 0.52 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
56 Leaf wounded 0.39 >More info 0.70 >More info Leaf control vegetative leaf Original data GEO bulk
57 Col-Luc WT 3h antimycin A 0.55 >More info 0.53 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
58 SHR-GR Time 1H Dex 0.44 >More info 0.64 >More info SHR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
59 root Dosed gold 0.56 >More info 0.51 >More info root No gold .125 mM gold 24 h roots Original data
60 WT chitooctaose 0.52 >More info 0.55 >More info WT water Original data GEO bulk
61 0.125 mM gold 24 h 0.56 >More info 0.51 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
62 ARR22-ox (t-zeatin 3 h) 0.62 >More info 0.45 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
63 Rose Bengal 0.5 uM 0.46 >More info 0.61 >More info Control RB and PER Rose Bengal Original data
64 pepr1-1 Pepr2-3 +Pep2 2h -0.59 >More info -0.48 >More info WT +Pep2 2h Pep2 Original data GEO bulk
65 Anoxia 0.48 >More info 0.59 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
66 seedling 6h after HZE WT 0.57 >More info 0.49 >More info seedling day 1 unirradiated WT 6h Original data
67 Col upon hypoxia 6 hrs 0.58 >More info 0.48 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
68 12m.KCl 0.44 >More info 0.62 >More info To. KCl 14 day old Roots Original data GEO bulk
69 SA 4mM 0.42 >More info 0.64 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
70 Rsch 8h 0.44 >More info 0.62 >More info Rsch CA Leaves Original data
71 Bur-0-1h IAA 0.52 >More info 0.53 >More info Bur-0h IAA whole plant Original data GEO bulk
72 Col0-PsmES4326-24hpi 0.44 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
73 1h +Pi -0.40 >More info -0.65 >More info 1h -Pi root Original data GEO bulk
74 (Col-0)+200 uM As 0.48 >More info 0.57 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
75 WT AntimycinA 3h 0.56 >More info 0.48 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
76 Wounding Stress3 h (shoot) 0.49 >More info 0.55 >More info Stress mock 3 h (shoot) Original data Stress treatments
77 Laer pretreat GA Flg22 1h 0.33 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
78 WT+chitooctaose 0.36 >More info 0.68 >More info WT+water chitooctaose seedlings Original data GEO bulk
79 9 hr Hypoxia IP RNA 0.54 >More info 0.49 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
80 ein5-1 ski2-3 0.55 >More info 0.48 >More info Col-0 aerial tissue Original data
81 bak1-3 +Pep2 10h 0.55 >More info 0.48 >More info WT +Pep2 10h Pep2 Original data GEO bulk
82 root control pSHR 0.58 >More info 0.45 >More info root control total control root Original data GEO bulk
83 plant (tga2-5-6) 4h OPDA 0.60 >More info 0.42 >More info plant (tga2-5-6) 4h control Original data GEO bulk
84 Col-0 flu HL 3h 0.60 >More info 0.42 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
85 ataf1-1 mutant Col-0 Bgh inoculated 0.56 >More info 0.46 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
86 ex2 flu dark 8hours/30 minute light 0.33 >More info 0.69 >More info col dark 8hours/30 minute light Original data GEO bulk
87 15m.KCl 0.47 >More info 0.55 >More info To. KCl 14 day old Roots Original data GEO bulk
88 (Col-0)+100 uM As 0.46 >More info 0.56 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
89 max4 hypocotyl 0.49 >More info 0.53 >More info wt hypocotyl hypocotyl Original data GEO bulk
90 myb61 cork 0.49 >More info 0.53 >More info wt cork cork Original data GEO bulk
91 aox1a:rpoTmp MLD stressed -0.54 >More info -0.47 >More info WT(Col0) MLD stressed (control aox1a:rpoTmp) leaf Original data
92 root protophloem 40 mM NaCl 0.56 >More info 0.45 >More info root protophloem Original data GEO bulk
93 root hypoxia total 0.59 >More info 0.42 >More info root control total Original data GEO bulk
94 WT Col-0 Bgh inoculated 0.54 >More info 0.47 >More info WT Col-0 Un-inoculated Original data GEO bulk
95 Col-0 2HS 0.53 >More info 0.47 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
96 Bur-0-3h IAA 0.50 >More info 0.50 >More info Bur-0h IAA whole plant Original data GEO bulk
97 root callus inducing medium 24h -0.62 >More info -0.38 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
98 QC pSCR 0h BL -0.41 >More info -0.59 >More info WR 35S 0h BL brassinosteroid root Original data
99 Ws HS 0.43 >More info 0.57 >More info Ws control heat shocked seedling Original data GEO bulk
100 opr3 JA 0.5 h 0.34 >More info 0.66 >More info opr3 0 h Original data GEO bulk
101 4C 1h 0.42 >More info 0.58 >More info 4C 0h Original data GEO bulk
102 Leafminer damaged seedlings 0.44 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
103 ani1 T0.5 -0.54 >More info -0.45 >More info WT T0.5 root tissue Original data GEO bulk
104 WT NAA/flg 1h 0.51 >More info 0.48 >More info WT 0h Leaf tissue Original data GEO bulk
105 gpa1 -ABA GC -0.38 >More info -0.61 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
106 Chemically 0.37 >More info 0.62 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
107 NJ15 0.40 >More info 0.59 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
108 plant (Col-0) 4h OPDA 0.57 >More info 0.41 >More info plant (Col-0) 4h control Original data GEO bulk
109 OPDA 4 h 0.57 >More info 0.41 >More info Col-0 Original data GEO bulk
110 myb61 xylem 0.42 >More info 0.56 >More info wt xylem xylem Original data GEO bulk
111 21h-DC3000 avrRpm1 -0.53 >More info -0.44 >More info 21h-DC3000 leaves Original data GEO bulk
112 SHR-GR Time 12H Dex -0.43 >More info -0.54 >More info SHR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
113 WT flg22 1h 0.47 >More info 0.50 >More info WT 0h Leaf tissue Original data GEO bulk
114 sfr6 drought -0.47 >More info -0.50 >More info WT drought All aerial tissue Original data GEO bulk
115 cpctry 0.26 >More info 0.71 >More info Col Original data GEO bulk
116 Seedling-HeatStressed TOTALmRNA 0.43 >More info 0.54 >More info Seedling-control TOTALmRNA seedling Original data
117 seedlings protease IV 0.45 >More info 0.52 >More info seedlings nontreated control whole seedling Original data
118 2hr KCl control SR cell 0.56 >More info 0.40 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
119 Col-0 37C 0.55 >More info 0.41 >More info Col-0 22C Original data GEO bulk
120 R. solani AG2-1 0.53 >More info 0.43 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
121 WT Root Hypoxia 0.58 >More info 0.38 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
122 toc1-1-57hr 0.57 >More info 0.39 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
123 Col-0 ozone 0.59 >More info 0.36 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
124 DFPM 0.53 >More info 0.42 >More info control Original data GEO bulk
125 plant (tga2-5-6) 4h phytoprostane A1 0.42 >More info 0.53 >More info plant (tga2-5-6) 4h control Original data GEO bulk
126 3.5h KNO3 Whole root 0.37 >More info 0.58 >More info 3.5h KCl control Whole root Whole root Original data GEO bulk
127 AtLysM RLK1 mutant chitooctaose -0.42 >More info -0.53 >More info WT chitooctaose Original data GEO bulk
128 gai Control 0.56 >More info 0.38 >More info Laer Control leaf discs Original data GEO bulk
129 col-5 DC3000-avrRpm 4h 0.55 >More info 0.39 >More info col-5 MgCl2 4h Whole leaf Original data GEO bulk
130 9m.KCl 0.42 >More info 0.52 >More info To. KCl 14 day old Roots Original data GEO bulk
131 opr3 OPDA 0.5 h 0.35 >More info 0.59 >More info opr3 0 h Original data GEO bulk
132 arr-dmso-sample 0.55 >More info 0.38 >More info Wt-dmso-sample seedling Original data
133 root cells cortex -Fe 0.67 >More info 0.26 >More info whole roots standard Original data GEO bulk
134 35S:VND7-VP16-GR+DEX +CHX 0.28 >More info 0.65 >More info 35S:VND7-VP16-GR+CHX 10mM cycloheximide (CHX) 2hrs followed by 10mM dexamethazone (DEX) 4hrs whole seedlings Original data GEO bulk
135 GST NPP1 4 h (leaf) 0.52 >More info 0.41 >More info Mock 4 h (leaf) Original data Elicitor treatments
136 hira-root -0.52 >More info -0.41 >More info WT-root root Original data
137 Methyl Jasmonate 1 h 0.41 >More info 0.52 >More info Mock 1 h Original data Basic hormone treatment of seedlings
138 Col-0 wt Hypoxic 0.43 >More info 0.50 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
139 35S::MBF1c 0.41 >More info 0.52 >More info control Original data GEO bulk
140 Te 8h 0.35 >More info 0.58 >More info Te CA Leaves Original data
141 Col 8h 0.42 >More info 0.51 >More info Col CA Leaves Original data
142 Col ozone 3h 0.37 >More info 0.55 >More info Col clean-air 3h ozone Original data GEO bulk
143 Laer pretreat GA+JA Flg22 0h 0.57 >More info 0.35 >More info Laer pretreat water control leaf discs Original data GEO bulk
144 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.59 >More info 0.33 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
145 ein2-1 9 hpi A. brassicicola 0.51 >More info 0.41 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
146 WT 6H Cold 0.50 >More info 0.42 >More info WT control Original data GEO bulk
147 toc1-1-81hr 0.50 >More info 0.42 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
148 Cold Stress 24 h (root) 0.56 >More info 0.35 >More info Stress mock 24 h (root) Original data Stress treatments
149 ANOXIA -0.38 >More info -0.53 >More info ANOXIA+SUCROSE Original data GEO bulk
150 Light 0.35 >More info 0.56 >More info Control Original data GEO bulk
151 Col-0 HS 0.28 >More info 0.63 >More info Col-0 control heat shocked seedling Original data GEO bulk
152 WT (Col-0) heat shock 0.28 >More info 0.63 >More info WT (Col-0) whole seedling Original data GEO bulk
153 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.58 >More info 0.33 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
154 root callus inducing medium 48 h -0.59 >More info -0.32 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
155 bHLH122 ox -0.41 >More info -0.50 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
156 TA induced 0.34 >More info 0.56 >More info Methanol TA Suspension cells Original data GEO bulk
157 coi1-16 ein2 sid2 ctrl -0.55 >More info -0.35 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
158 Seedling-HeatStressed POLYSOMESmRNA 0.40 >More info 0.50 >More info Seedling-control POLYSOMESmRNA seedling Original data
159 root callus inducing medium 12 h -0.55 >More info -0.34 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
160 SCL3 OE -0.55 >More info -0.34 >More info Col-0 whole root Original data GEO bulk
161 Phaseolicola 2 h (leaf) 0.51 >More info 0.38 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
162 CT101 ozone 0.54 >More info 0.35 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
163 2 hr Hypoxia Total RNA 0.50 >More info 0.39 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
164 Root GLU1-KO -0.50 >More info -0.39 >More info Root Col(0) roots Original data GEO bulk
165 root control pSUC2 0.54 >More info 0.35 >More info root control total control root Original data GEO bulk
166 miR393 flg22 1h 0.38 >More info 0.51 >More info WT 0h Leaf tissue Original data GEO bulk
167 flu dark 8hours/30 minute light 0.19 >More info 0.69 >More info col dark 8hours/30 minute light Original data GEO bulk
168 2hr continuous KNO3 PrR cell 0.67 >More info 0.20 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
169 17 2h total -0.54 >More info -0.33 >More info 27 1h total 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
170 WT-NOCO2 INFECTED 0.52 >More info 0.35 >More info WT-MOCK Original data GEO bulk
171 hrpA 7h 0.52 >More info 0.35 >More info Mock 7h hrpA Original data GEO bulk
172 HopZ1a treated 0.52 >More info 0.35 >More info col Original data GEO bulk
173 roottip control p35S 0.32 >More info 0.54 >More info roottip control total control roottip Original data GEO bulk
174 Whole root - low pH 48H -0.17 >More info -0.69 >More info Whole root - Std pH 48H pH 4.6 for 48 hr Original data GEO bulk
175 del1-1 5dpi 0.25 >More info 0.61 >More info Col-0 5dpi mature fully expanded leaves Original data GEO bulk
176 npr1 sni1 brca2a SA -0.30 >More info -0.55 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
177 FLIGHT TAGESB plate 0.60 >More info 0.25 >More info GROUND CONTROL TAGESB plate Original data
178 AvrRpt2 Col-0 6hpi 0.54 >More info 0.30 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
179 shoots bhlh100/101 0uM Fe 0.53 >More info 0.31 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
180 toc1-1-77hr 0.54 >More info 0.30 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
181 HopZ1a treated ulp1c ulp1d 0.53 >More info 0.31 >More info col Original data GEO bulk
182 Te ozone 0.50 >More info 0.34 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
183 npr1-1 SA -0.51 >More info -0.32 >More info Col-0 SA complete seedling Original data
184 Laer pretreat GA Flg22 0h 0.52 >More info 0.31 >More info Laer pretreat water control leaf discs Original data GEO bulk
185 17 0h total -0.52 >More info -0.31 >More info 27 0h total whole seedlings floating on MS medium Original data
186 myb50 xylem 0.51 >More info 0.32 >More info wt xylem xylem Original data GEO bulk
187 entire vegetative rosette 0.55 >More info 0.28 >More info Col-0 Mock WL entire vegetative rosette Original data
188 root cap pGL2(QC pSCRBRI1) 0h BL -0.32 >More info -0.51 >More info WR 35S 0h BL brassinosteroid root Original data
189 1hr-pH4.5 0.31 >More info 0.52 >More info 1hr-pH6 1hr pH 4.5 roots Original data GEO bulk
190 Col in Pi deficiency medium 0.21 >More info 0.62 >More info Col in control medium root Original data GEO bulk
191 root callus inducing medium 96 h -0.54 >More info -0.28 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
192 ga1-3 SCL3OE -0.55 >More info -0.27 >More info ga1-3 whole root Original data
193 35S::RSL4 -0.31 >More info -0.51 >More info Col-0 Control root Original data GEO bulk
194 CeO2 germinant -0.28 >More info -0.54 >More info Millipore Water germinant CeO2 seedling Original data
195 17 2h unlabelled -0.50 >More info -0.31 >More info 27 1h unlabelled 1.5mM 4SU added at h whole seedlings floating on MS medium Original data
196 AtGATA2ox 0.58 >More info 0.23 >More info Col seedling Original data GEO bulk
197 atmospheric CO2 high Mg shoot 0.52 >More info 0.28 >More info atmospheric CO2 normal Mg shoot Shoot Original data
198 root longitudinal zone-3 pH 4.6 -0.50 >More info -0.30 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
199 35S:RPS4 eds1-2 2h -0.20 >More info -0.60 >More info 35S:RPS4 2h leaves Original data
200 Laer pretreat GA+JA Flg22 1h 0.53 >More info 0.25 >More info Laer pretreat water control leaf discs Original data GEO bulk
201 ahg2-1sid2-2 0.25 >More info 0.53 >More info WT (Col) control Original data GEO bulk
202 Whole root - S 3H 0.26 >More info 0.52 >More info Whole root - S 0H Original data GEO bulk
203 1 h Light IP RNA -0.28 >More info -0.50 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
204 WT seedlings IAA 0.19 >More info 0.59 >More info WT seedlings control Seedlings Original data GEO bulk
205 seedlings +5AC 0.53 >More info 0.24 >More info control seedlings 10-day old whole seedling Original data GEO bulk
206 IAA 24h 0.50 >More info 0.27 >More info control 24h root Original data GEO bulk
207 Mutant axr3-1 (IAA) 0.19 >More info 0.58 >More info Col (IAA) Original data GEO bulk
208 35S:VND7-VP16-GR+CHX 0.10 >More info 0.67 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
209 OsSAP11 expressing -0.27 >More info -0.50 >More info WT seedlings Original data GEO bulk
210 Kas-1 -Fe 24h -0.23 >More info -0.54 >More info Kas-1 +Fe 24h roots Original data GEO bulk
211 Kas -Fe 24h Roots -0.23 >More info -0.54 >More info Kas +Fe 24h Roots Original data GEO bulk
212 Botrytis cinerea 48h 0.52 >More info 0.24 >More info control 48h Original data GEO bulk
213 HARAP aerobic -0.23 >More info -0.53 >More info WT aerobic aerobic Original data GEO bulk
214 gun1gun5 far-red pretreated -0.22 >More info -0.54 >More info WT far-red pretreated Original data GEO bulk
215 toc1-1-49hr 0.50 >More info 0.25 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
216 cngc1-3 -0.61 >More info -0.14 >More info Col-0 root Original data GEO bulk
217 +1.6 mM Tween 20 1 h. 0.55 >More info 0.20 >More info +distilled water 1 h. Original data GEO bulk
218 root longitudinal zone-2 low sulfur -0.22 >More info -0.53 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
219 Stigma 0.52 >More info 0.22 >More info Seedling Original data GEO bulk
220 bri1-116 0.01 >More info 0.73 >More info Col seedling Original data GEO bulk
221 vte2-1 1d vernalization 0.20 >More info 0.54 >More info WT 1d vernalization Original data GEO bulk
222 Red/FR Light45min -0.09 >More info 0.82 >More info FarRed Light 45min Original data Light treatments
223 WT Nitrate 0.5h 0.60 >More info 0.12 >More info WT untreated Original data GEO bulk
224 GA 120min 0.19 >More info 0.52 >More info CON120 GA 120 min. root tips Original data GEO bulk
225 atmyc2 Seedling BL -0.09 >More info -0.61 >More info WT Seedling BL Original data GEO bulk
226 IAA7mII over-expressor IAA Treated -0.01 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
227 dorn1-1 Root 100 mM ATP 30 min -0.08 >More info -0.59 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
228 20m.KCl 0.50 >More info 0.16 >More info To. KCl 14 day old Roots Original data GEO bulk
229 camta1-2 0.50 >More info 0.15 >More info Col-0-WT Original data GEO bulk
230 downy mildew cotyledons late stage 0.58 >More info 0.07 >More info mock inoculated Cotyledons Original data GEO bulk
231 columella auxin 0.13 >More info 0.50 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
232 clf-28 -0.58 >More info -0.04 >More info Col whole plant Original data GEO bulk
233 NaCl cpctry 0.09 >More info 0.52 >More info NaCl Col Original data GEO bulk
234 xyl-grown cell culture- 1h 1mM Suc 0.04 >More info -0.65 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
235 swn-7 -0.55 >More info -0.05 >More info Col whole plant Original data GEO bulk
236 ex1 flu dark 8hours/30 minute light 0.02 >More info 0.58 >More info col dark 8hours/30 minute light Original data GEO bulk
237 Col BTH -0.09 >More info 0.67 >More info Col rosettes Original data GEO bulk
238 WT zebularine 5d -0.50 >More info -0.07 >More info WT mock 5d shoot apical meristem Original data
239 cngc19 -0.55 >More info -0.02 >More info Col-0 root Original data GEO bulk
240 siliques AtHb1 control 0.03 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
241 Col-0 (t-zeatin 3 h) -0.03 >More info -0.51 >More info Col-0 Original data Cytokinin treatment of seedlings
242 Fe starvation 72 h 0.03 >More info 0.51 >More info Control Original data GEO bulk
243 whole roots -Fe 72 hour 0.03 >More info 0.51 >More info whole roots standard Original data GEO bulk
244 HairpinZ 4 h (leaf) 0.53 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
245 FAMA induced 4h 0.53 >More info -0.04 >More info control 4h Whole seedling Original data GEO bulk
246 CCA1-ox 6am non-polysomal -0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
247 seed germinating in countinuous light 24h SL -0.22 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
248 shoot hypoxia p35S 0.20 >More info -0.65 >More info shoot hypoxia total Original data GEO bulk
249 Shoot apex inflorescence (after bolting) -0.21 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
250 shoot control p35S 0.19 >More info -0.62 >More info shoot control total Original data GEO bulk
251 Ba1 UV 0.11 >More info -0.51 >More info Ba1 mock UV seedling Original data
252 35S:ATR1 like miR -0.20 >More info 0.52 >More info WT for miR Original data GEO bulk