4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on HARAP aerobic
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List of experiments correlated with "HARAP aerobic"  Help Download transcriptome of top 30
Score Experiment Correlation from
HARAP aerobic		 Correlation to
HARAP aerobic		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 HARAP aerobic 1.00 >More info 1.00 >More info WT aerobic aerobic Original data GEO bulk
2 amiRAP aerobic 0.76 >More info 0.84 >More info WT aerobic aerobic Original data GEO bulk
3 4C 1h -0.67 >More info -0.79 >More info 4C 0h Original data GEO bulk
4 chito-tetramer -0.80 >More info -0.57 >More info Col Mock Original data GEO bulk
5 35S:RPS4 eds1-2 2h 0.64 >More info 0.70 >More info 35S:RPS4 2h leaves Original data
6 WT drought -0.70 >More info -0.63 >More info WT control All aerial tissue Original data GEO bulk
7 chito-octamer -0.79 >More info -0.53 >More info Col Mock Original data GEO bulk
8 4C 2h(SOIL) -0.70 >More info -0.62 >More info 4C 0h(SOIL) Original data GEO bulk
9 WT+chitooctaose -0.72 >More info -0.60 >More info WT+water chitooctaose seedlings Original data GEO bulk
10 Col ozone 3h -0.60 >More info -0.71 >More info Col clean-air 3h ozone Original data GEO bulk
11 root - 08% oxygen - 48h 0.55 >More info 0.73 >More info root - 21% oxygen - 48h Original data GEO bulk
12 ex2 flu dark 8hours/30 minute light -0.64 >More info -0.63 >More info col dark 8hours/30 minute light Original data GEO bulk
13 A. thaliana-A. lyrata hybrid 0.64 >More info 0.61 >More info A. thaliana mature leaves before flowering Original data GEO bulk
14 epiF3 0.74 >More info 0.50 >More info WT Col-0 aerial part Original data
15 myb3 myb3r4d -0.59 >More info -0.65 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
16 Dex-rga(delta17) 4h GA4 0.60 >More info 0.63 >More info Vector 4h GA4 shoots Original data GEO bulk
17 Col-0 RNAi-MBS2/mbs1-1 HL 3h 0.55 >More info 0.68 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
18 WT +elf18 2h -0.73 >More info -0.50 >More info WT untreated elf18 Original data GEO bulk
19 pepr1-1 Pepr2-3 +Pep2 2h 0.67 >More info 0.56 >More info WT +Pep2 2h Pep2 Original data GEO bulk
20 Cor hrpS 10h -0.54 >More info -0.68 >More info Mock 10h Cor hrpS Original data GEO bulk
21 WT +elf18 10h -0.74 >More info -0.48 >More info WT untreated elf18 Original data GEO bulk
22 til1-1 22C -0.64 >More info -0.58 >More info Col-0 22C Original data GEO bulk
23 myb61 xylem -0.51 >More info -0.70 >More info wt xylem xylem Original data GEO bulk
24 flu dark 8hours/30 minute light -0.56 >More info -0.65 >More info col dark 8hours/30 minute light Original data GEO bulk
25 cys-c1 root 0.77 >More info 0.42 >More info Root-WT roots Original data GEO bulk
26 AtLysM RLK1 mutant chitooctaose 0.69 >More info 0.50 >More info WT chitooctaose Original data GEO bulk
27 Bur-0-3h IAA -0.75 >More info -0.44 >More info Bur-0h IAA whole plant Original data GEO bulk
28 npr1 sni1 brca2a SA 0.62 >More info 0.57 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
29 coi1-2 -0.53 >More info -0.65 >More info Col-0 mock Whole seedling Original data GEO bulk
30 seedling 6h after HZE WT -0.65 >More info -0.53 >More info seedling day 1 unirradiated WT 6h Original data
31 WT chitooctaose -0.65 >More info -0.53 >More info WT water Original data GEO bulk
32 WT-NOCO2 INFECTED -0.74 >More info -0.44 >More info WT-MOCK Original data GEO bulk
33 Cycloheximide 3 h -0.72 >More info -0.46 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
34 +1.6 mM Tween 20 1 h. -0.57 >More info -0.60 >More info +distilled water 1 h. Original data GEO bulk
35 low CO2 + light -0.51 >More info -0.65 >More info normal CO2 + light Original data GEO bulk
36 WT NAA 2h -0.50 >More info -0.66 >More info WT 0h Leaf tissue Original data GEO bulk
37 OsRLCK253 expressing 0.69 >More info 0.47 >More info WT seedlings Original data GEO bulk
38 WT-Dry -0.69 >More info -0.47 >More info WT-CK dehydration treatment 1h Original data
39 dde2-2 9 hpi A. brassicicola -0.59 >More info -0.56 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
40 AgNO3 3 h -0.67 >More info -0.48 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
41 CDB1-Knockout 0.44 >More info 0.71 >More info WT Original data GEO bulk
42 Rose Bengal 0.5 uM -0.58 >More info -0.55 >More info Control RB and PER Rose Bengal Original data
43 protoplasts T1 [flg22] -0.54 >More info -0.59 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
44 root - 04% oxygen - 48h 0.50 >More info 0.63 >More info root - 21% oxygen - 48h Original data GEO bulk
45 aba2 1% sucrose 12-day-old -0.63 >More info -0.50 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
46 AFB1 0h -0.44 >More info -0.69 >More info Col 0h Leaf Original data GEO bulk
47 3x(m) -0.55 >More info -0.57 >More info 2x two week old seedlings Original data
48 abi1 hypocotyl -0.66 >More info -0.46 >More info Ler hypocotyl hypocotyl Original data GEO bulk
49 GST 4 h (leaf) -0.51 >More info -0.61 >More info Mock 4 h (leaf) Original data Elicitor treatments
50 4h decapitation 0.42 >More info 0.69 >More info axillary-buds-before-decapitation axillary shoots Original data GEO bulk
51 IAA 0.5 h -0.51 >More info -0.59 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
52 WT AntimycinA 3h -0.62 >More info -0.48 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
53 46T-Dry -0.55 >More info -0.54 >More info WT-Dry dehydration treatment 1h Original data
54 Leaf wounded -0.56 >More info -0.53 >More info Leaf control vegetative leaf Original data GEO bulk
55 3x(p) -0.61 >More info -0.48 >More info 2x two week old seedlings Original data
56 phr1 Root-Pi -0.69 >More info -0.39 >More info WT Root+Pi roots Original data GEO bulk
57 mkk1 control rep 0.52 >More info 0.56 >More info Col-0 Time 0 rep Original data GEO bulk
58 Infected pft1 leaf -0.60 >More info -0.48 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
59 seedlings protease IV -0.62 >More info -0.45 >More info seedlings nontreated control whole seedling Original data
60 camta2/3 warm -0.50 >More info -0.57 >More info WT warm entire aerial part Original data GEO bulk
61 GST NPP1 4 h (leaf) -0.58 >More info -0.48 >More info Mock 4 h (leaf) Original data Elicitor treatments
62 BLM+INA -0.60 >More info -0.46 >More info CK BLM and INA seedling Original data
63 oas-a1.1 shoot 0.57 >More info 0.49 >More info WT-Untreated Shoot Original data GEO bulk
64 Mutant ga1-5 0.52 >More info 0.54 >More info Ler-1 Original data Comparison of plant hormone related mutant
65 WT 3h -P -0.43 >More info -0.63 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
66 oligomycin 4 h -0.66 >More info -0.39 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
67 WT 3H Cold -0.52 >More info -0.53 >More info WT control Original data GEO bulk
68 bak1-3 +Pep2 2h -0.55 >More info -0.50 >More info WT +Pep2 2h Pep2 Original data GEO bulk
69 FLIGHT TAGESB plate6 ROOTS -0.66 >More info -0.39 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
70 WT +Pep2 10h -0.64 >More info -0.41 >More info WT untreated Pep2 Original data GEO bulk
71 Chitin -0.69 >More info -0.36 >More info Col C Original data GEO bulk
72 vtc2 (I) -0.58 >More info -0.47 >More info Col (I) rosette Original data GEO bulk
73 estradiole-induced ANAC059 -0.48 >More info -0.57 >More info transgenic (empty vector inducible system) Original data GEO bulk
74 A. lyrata 0.57 >More info 0.47 >More info A. thaliana mature leaves before flowering Original data GEO bulk
75 Mutant iaa5_6_19 0.54 >More info 0.50 >More info Col Original data GEO bulk
76 root - 04% oxygen - 2h 0.41 >More info 0.63 >More info root - 21% oxygen - 2h Original data GEO bulk
77 WT+H2O2 -0.61 >More info -0.42 >More info WT H2O2 Original data GEO bulk
78 Col-0-3h IAA -0.73 >More info -0.30 >More info Col-0-0h IAA whole plant Original data GEO bulk
79 Protoplast Induced -0.53 >More info -0.50 >More info Uninduced Original data GEO bulk
80 Bur-0-1h IAA -0.69 >More info -0.34 >More info Bur-0h IAA whole plant Original data GEO bulk
81 Col-0 DCA 48h -0.48 >More info -0.55 >More info Col-0 MOCK 48h Original data GEO bulk
82 TNT-seedlings -0.32 >More info -0.71 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
83 WT NAA/flg 2h -0.70 >More info -0.32 >More info WT 0h Leaf tissue Original data GEO bulk
84 Roots Cd 0.69 >More info 0.33 >More info Roots control Cd Root Original data GEO bulk
85 seedling 6h after HZE atm-1 -0.51 >More info -0.51 >More info seedling day 1 unirradiated atm-1 6h Original data
86 miR393 flg22 2h -0.68 >More info -0.34 >More info WT 0h Leaf tissue Original data GEO bulk
87 OsSAP11 expressing 0.60 >More info 0.42 >More info WT seedlings Original data GEO bulk
88 atr zebularine -0.68 >More info -0.34 >More info WT zebularine shoot apical meristem Original data
89 Lipopolysaccaride4 h (leaf) -0.49 >More info -0.53 >More info Mock 4 h (leaf) Original data Elicitor treatments
90 WT 2-4h Xanthomonas -0.56 >More info -0.45 >More info WT T0 Original data GEO bulk
91 P.syringae vir 4 h (leaf) -0.29 >More info -0.72 >More info Mock 4 h (leaf) Original data Elicitor treatments
92 bri1-116 0.28 >More info 0.73 >More info Col seedling Original data GEO bulk
93 Dex-rga(delta17) 2h GA4 0.45 >More info 0.56 >More info Vector 4h GA4 shoots Original data GEO bulk
94 INA -0.61 >More info -0.39 >More info CK INA seedling Original data
95 seedling 12h after HZE WT -0.58 >More info -0.42 >More info seedling day 1 unirradiated WT 12h Original data
96 pepr1-1 Pepr2-3 +Pep2 10h 0.55 >More info 0.45 >More info WT +Pep2 10h Pep2 Original data GEO bulk
97 AFB1 flg22 2h -0.67 >More info -0.33 >More info WT 0h Leaf tissue Original data GEO bulk
98 Mutant siz1-3 (Drought) -0.59 >More info -0.41 >More info Col-0 (Drought) Original data GEO bulk
99 efr-1 +elf18 10h 0.61 >More info 0.39 >More info WT +elf18 10h elf18 Original data GEO bulk
100 siz1-3 drought -0.59 >More info -0.41 >More info Col-0 drought Original data GEO bulk
101 seedlings-week-old RECA1-overexpressing
transgenic		 -0.53 >More info -0.47 >More info seedlings-week-old Col-0 seedlings Original data
102 GO5; 8h switch to ambient CO2 concentrations; -0.57 >More info -0.43 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
103 toc1-1-53hr -0.57 >More info -0.43 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
104 root - 08% oxygen - 2h 0.30 >More info 0.70 >More info root - 21% oxygen - 2h Original data GEO bulk
105 tfl1-1-16ºC -0.39 >More info -0.61 >More info WT-16ºC Original data GEO bulk
106 WT NAA 1h -0.43 >More info -0.57 >More info WT 0h Leaf tissue Original data GEO bulk
107 coi1-2 JA -0.49 >More info -0.51 >More info JA Whole seedling Original data GEO bulk
108 mil4 0.56 >More info 0.43 >More info Col rosettes Original data GEO bulk
109 vtc1 (II) -0.55 >More info -0.44 >More info Col (II) rosette Original data GEO bulk
110 ataf1-1 mutant Col-0 Bgh inoculated -0.61 >More info -0.38 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
111 Salt Stress 24 h (root) -0.68 >More info -0.31 >More info Stress mock 24 h (root) Original data Stress treatments
112 Bur-0-30min IAA -0.62 >More info -0.37 >More info Bur-0h IAA whole plant Original data GEO bulk
113 root - 08% oxygen - 30min 0.44 >More info 0.55 >More info root - 21% oxygen - 30min Original data GEO bulk
114 Col-0 INA 48h -0.53 >More info -0.45 >More info Col-0 MOCK 48h Original data GEO bulk
115 sfr6 drought 0.62 >More info 0.36 >More info WT drought All aerial tissue Original data GEO bulk
116 pad4-PsmES4326-24hpi 0.56 >More info 0.42 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
117 ein2-1 9 hpi A. brassicicola -0.63 >More info -0.35 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
118 bak1-3 +Pep2 10h -0.55 >More info -0.43 >More info WT +Pep2 10h Pep2 Original data GEO bulk
119 Leafminer systemically damaged thaliana seedlings -0.66 >More info -0.32 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
120 seed germinating in countinuous light 24h SL 0.31 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
121 C24-1h IAA -0.61 >More info -0.36 >More info C24-0h IAA whole plant Original data GEO bulk
122 CMP 4hr -0.59 >More info -0.38 >More info Acetone 4hr root Original data GEO bulk
123 aba1 hypocotyl -0.61 >More info -0.36 >More info Ler hypocotyl hypocotyl Original data GEO bulk
124 bHLH122 ox 0.52 >More info 0.45 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
125 35S::ERF104 Flg22 4h -0.56 >More info -0.41 >More info 35S::ERF104 H2O 4h Original data GEO bulk
126 toc1-1-57hr -0.63 >More info -0.34 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
127 flu over-tAPX -0.62 >More info -0.35 >More info WT Col Original data GEO bulk
128 eds16 whole leaf 6hpi 0.41 >More info 0.56 >More info Col whole leaf 6hpi whole leaf Original data GEO bulk
129 oas-a1.1 Cd 18h -0.39 >More info -0.58 >More info Cd 18h root Root Original data GEO bulk
130 Col-0 9 hpi A. brassicicola -0.56 >More info -0.40 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
131 sid2 0.64 >More info 0.32 >More info Col rosettes Original data GEO bulk
132 cpr5scv1 -0.55 >More info -0.41 >More info WT(COL) Original data GEO bulk
133 Dex-rga(delta17) 4h GA4+DEX 0.65 >More info 0.31 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
134 WT H2O2 3h -0.57 >More info -0.39 >More info WT water 3h 3h_H2O2 Original data GEO bulk
135 sid2-1 cold 0.58 >More info 0.38 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
136 C24-3h IAA -0.62 >More info -0.34 >More info C24-0h IAA whole plant Original data GEO bulk
137 Shoot apex inflorescence (after bolting) 0.31 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
138 20m.KCl -0.41 >More info -0.55 >More info To. KCl 14 day old Roots Original data GEO bulk
139 Cold Stress 24 h (root) -0.67 >More info -0.28 >More info Stress mock 24 h (root) Original data Stress treatments
140 camta3-2 -0.59 >More info -0.36 >More info WT Original data GEO bulk
141 rsa3-1 Na 24h -0.54 >More info -0.41 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
142 pmr5 pmr6 -0.57 >More info -0.38 >More info Col-0 Original data GEO bulk
143 anti-sense for AtAOX1a -0.62 >More info -0.33 >More info WT Original data GEO bulk
144 SCR-GR Time 1H Dex -0.43 >More info -0.52 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
145 ANOXIA 0.41 >More info 0.54 >More info ANOXIA+SUCROSE Original data GEO bulk
146 OE WRKY63.3 high light -0.41 >More info -0.54 >More info OE WRKY40.4 high light high light for 1h at 1000 μE m-2s-1 leaf Original data GEO bulk
147 OE WRKY40.4 0.38 >More info 0.56 >More info OE WRKY40.4 none leaf Original data GEO bulk
148 wrky72-2-MOCK -0.59 >More info -0.35 >More info WT-MOCK Original data GEO bulk
149 ani1 T0.5 0.57 >More info 0.37 >More info WT T0.5 root tissue Original data GEO bulk
150 R. solani AG2-1 -0.63 >More info -0.31 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
151 2hr transitory KNO3 PrR cell -0.52 >More info -0.42 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
152 C24-30min IAA -0.60 >More info -0.34 >More info C24-0h IAA whole plant Original data GEO bulk
153 flu -0.61 >More info -0.32 >More info WT Col Original data GEO bulk
154 toc1-1-49hr -0.57 >More info -0.36 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
155 Cor 24h -0.61 >More info -0.32 >More info Mock 24h Cor Original data GEO bulk
156 WT no Pi -0.70 >More info -0.23 >More info WT complete seedlings Original data
157 2hr continuous KCl and MSX control PeR cell -0.52 >More info -0.41 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
158 toc1-1-77hr -0.52 >More info -0.40 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
159 oligomycin 1 h -0.53 >More info -0.39 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
160 miR393 flg22 1h -0.62 >More info -0.30 >More info WT 0h Leaf tissue Original data GEO bulk
161 WT-SA -0.51 >More info -0.41 >More info WT-mock spray 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
162 15m light 0.57 >More info 0.35 >More info before light whole seedlings Original data GEO bulk
163 Flagellin 4 h (leaf) -0.50 >More info -0.42 >More info Mock 4 h (leaf) Original data Elicitor treatments
164 myb61 cork -0.58 >More info -0.34 >More info wt cork cork Original data GEO bulk
165 Leaf systemic -0.53 >More info -0.38 >More info Leaf control vegetative leaf Original data GEO bulk
166 wrky72-1-MOCK -0.56 >More info -0.35 >More info WT-MOCK Original data GEO bulk
167 AFB1 flg22 1h -0.63 >More info -0.28 >More info WT 0h Leaf tissue Original data GEO bulk
168 root Dosed gold -0.58 >More info -0.33 >More info root No gold .125 mM gold 24 h roots Original data
169 0.125 mM gold 24 h -0.58 >More info -0.33 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
170 ga1-3 SCL3OE 0.58 >More info 0.33 >More info ga1-3 whole root Original data
171 mtf1-1 0.56 >More info 0.34 >More info Col0 root Original data
172 rosette leaves fdh -0.53 >More info -0.37 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
173 Fei-0-30min IAA -0.53 >More info -0.37 >More info Fei-0-0h IAA whole plant Original data GEO bulk
174 Col-0 INA 6d -0.36 >More info -0.54 >More info Col-0 MOCK 6d Original data GEO bulk
175 AAF-OX -0.40 >More info -0.50 >More info Col-0 Rosette leaf Original data GEO bulk
176 8hr-pH4.5 -0.58 >More info -0.32 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
177 hst5 -0.54 >More info -0.35 >More info Col-0 Original data GEO bulk
178 stn7-1 0.51 >More info 0.38 >More info Col-0 rosette leaves Original data GEO bulk
179 Dex-rga(delta17) 2h GA4+DEX 0.62 >More info 0.27 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
180 Differentiation 36h 0.51 >More info 0.38 >More info Differentiation 0h leaves Original data
181 WT NAA/flg 1h -0.61 >More info -0.28 >More info WT 0h Leaf tissue Original data GEO bulk
182 A1-1 -0.51 >More info -0.38 >More info WT Original data GEO bulk
183 Full AC2 T1 0.58 >More info 0.31 >More info AC2 and AC2del control T1 one day post infusion with Agrobacterium containing full-length CaLCuV AC2 Arabidopsis rosette leaves Original data
184 Col-0 RNAi-MBS2/mbs1-1 HL 0h -0.59 >More info -0.30 >More info Col-0 WT HL 0h without high light treatment whole seedlings without root Original data
185 TaFLS overexpression line (OE2) 0.62 >More info 0.26 >More info Col-0 Rosette leaves Original data
186 low CO2 + dark -0.36 >More info -0.52 >More info normal CO2 + light Original data GEO bulk
187 CLO 4mM -0.59 >More info -0.28 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
188 piffq FR 1h 0.51 >More info 0.36 >More info WT FR 1h whole seedling Original data GEO bulk
189 vtc2-1 0.66 >More info 0.21 >More info Col-0 whole plant Original data GEO bulk
190 Col whole leaf 7dpi -0.52 >More info -0.35 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
191 vte2-1 3d vernalization -0.59 >More info -0.28 >More info WT 3d vernalization Original data GEO bulk
192 IRP1-OE-Ctrl--root -0.59 >More info -0.28 >More info COL-0-Ctrl--root root Original data
193 mkk2 control rep 0.58 >More info 0.29 >More info Col-0 Time 0 rep Original data GEO bulk
194 IAA/inhibitor B Treated -0.53 >More info -0.33 >More info IAA Treated Original data GEO bulk
195 Col BTH 0.19 >More info 0.67 >More info Col rosettes Original data GEO bulk
196 bio4-1 mutant watered00µM biotin leaves 0.51 >More info 0.35 >More info bio4-1 mutant leaves leaves Original data GEO bulk
197 D2O -0.51 >More info -0.35 >More info H2O seedling Original data GEO bulk
198 abi4 vtc2 (I) -0.50 >More info -0.36 >More info Col (I) rosette Original data GEO bulk
199 WT 6H Cold -0.53 >More info -0.32 >More info WT control Original data GEO bulk
200 Differentiation 48h 0.52 >More info 0.33 >More info Differentiation 0h leaves Original data
201 opr3 OPDA 0.5 h -0.17 >More info -0.68 >More info opr3 0 h Original data GEO bulk
202 Col-0-30min IAA -0.62 >More info -0.23 >More info Col-0-0h IAA whole plant Original data GEO bulk
203 5-Triiodobenzoic acid3 h -0.61 >More info -0.24 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
204 Primisulfuron EC50 -0.51 >More info -0.33 >More info Carrier (primisulfuron) Original data GEO bulk
205 axr1 hypocotyl -0.50 >More info -0.34 >More info wt hypocotyl hypocotyl Original data GEO bulk
206 WT resupplied Pi 4h -0.64 >More info -0.20 >More info WT complete seedlings Original data
207 P.p 30hai -0.54 >More info -0.30 >More info At-Control roots Original data GEO bulk
208 atr mock -0.56 >More info -0.28 >More info WT mock shoot apical meristem Original data
209 npr1 sni1 brca2a 0.31 >More info 0.53 >More info npr1 sni1 water water seedling Original data GEO bulk
210 (Col-0)+100 uM As -0.58 >More info -0.26 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
211 sid2-2 9 hpi A. brassicicola -0.59 >More info -0.25 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
212 Phaseolicola 2 h (leaf) -0.50 >More info -0.33 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
213 E.coli TUV86 2 fliC 7h -0.52 >More info -0.31 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
214 E.coli 0157 H7 7h -0.56 >More info -0.27 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
215 cpr5npr1svi1 -0.55 >More info -0.28 >More info WT(COL) Original data GEO bulk
216 Col-0 root drought 0.62 >More info 0.20 >More info Col-0 root water root Original data GEO bulk
217 Col-0-1h IAA -0.61 >More info -0.21 >More info Col-0-0h IAA whole plant Original data GEO bulk
218 Heat 6h 0.60 >More info 0.22 >More info At mock rosettes - 5 leaves stage Original data
219 spx1 spx2 resupplied Pi 4h 0.58 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
220 coi1-16 ein2 sid2 ozone -0.60 >More info -0.22 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
221 WT flg22 2h -0.57 >More info -0.25 >More info WT 0h Leaf tissue Original data GEO bulk
222 Selenate (root) -0.52 >More info -0.29 >More info Ws (root) Original data GEO bulk
223 Root Selenate -0.52 >More info -0.29 >More info Root control 40 micromolar selenate Root Original data GEO bulk
224 WT flg22 1h -0.55 >More info -0.26 >More info WT 0h Leaf tissue Original data GEO bulk
225 Differentiation 24h 0.51 >More info 0.30 >More info Differentiation 0h leaves Original data
226 9m.KNO3 -0.58 >More info -0.23 >More info To. KNO3 14 day old Roots Original data GEO bulk
227 hrpA 7h -0.57 >More info -0.24 >More info Mock 7h hrpA Original data GEO bulk
228 Col-0 35S:MBS1 HL 3h 0.52 >More info 0.28 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
229 Col-0 V. longisporum-inoculated 48 hpi -0.53 >More info -0.27 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
230 abi4-102 (II) -0.50 >More info -0.30 >More info Col (II) rosette Original data GEO bulk
231 WT Col-0 Bgh inoculated -0.56 >More info -0.24 >More info WT Col-0 Un-inoculated Original data GEO bulk
232 16C 10h 0.18 >More info 0.62 >More info L22-10hrs whole plant excluding roots Original data GEO bulk
233 35S:CDO1 normoxia -0.18 >More info -0.62 >More info WT normoxia normoxia whole rosette Original data
234 Leafminer locally damaged thaliana seedlings -0.57 >More info -0.23 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
235 Laer Flg22+GA 2h -0.58 >More info -0.22 >More info Laer Control leaf discs Original data GEO bulk
236 C24 ozone -0.58 >More info -0.22 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
237 1h +Pi 0.57 >More info 0.23 >More info 1h -Pi root Original data GEO bulk
238 T8 leaf-drought 0.60 >More info 0.19 >More info T8 leaf-well watered Original data GEO bulk
239 anac017-2 AntimycinA 3h 0.50 >More info 0.29 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
240 LTN008-2 aza-dc -0.59 >More info -0.20 >More info LTN012-2 Mock Original data
241 rdr6-15 0.51 >More info 0.28 >More info Col-0 Original data GEO bulk
242 Chitosan 3h Treatment -0.56 >More info -0.23 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
243 root - 01% oxygen - 30min 0.27 >More info 0.52 >More info root - 21% oxygen - 30min Original data GEO bulk
244 Elevated CO2 AMPLE N NIGHT -0.53 >More info -0.25 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
245 irradiated leaf (WT 1d) -0.58 >More info -0.20 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
246 Laer Flg22+GA 1h -0.58 >More info -0.20 >More info Laer Control leaf discs Original data GEO bulk
247 Ts5 roots 2hr KCl control -0.68 >More info -0.10 >More info Col0 roots 2hr KCl control root Original data GEO bulk
248 Laer Flg22 2h -0.56 >More info -0.22 >More info Laer Control leaf discs Original data GEO bulk
249 Mutant NahG(leaf) 0.50 >More info 0.28 >More info Col-0 (leaf) Original data GEO bulk
250 Ws seedlings -0.61 >More info -0.17 >More info ged1 seedlings Original data GEO bulk
251 FLIGHT TAGES 2B plate6 HYPOCOTYLS -0.51 >More info -0.27 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
252 ged1 seedlings 0.61 >More info 0.17 >More info Ws seedlings Original data GEO bulk
253 Te ozone -0.57 >More info -0.21 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
254 WT Atum 2h -0.51 >More info -0.26 >More info WT 0h Leaf tissue Original data GEO bulk
255 CMV-A2b mutant -0.55 >More info -0.22 >More info Mock-At Aerial tissues Original data GEO bulk
256 light-hs 0.63 >More info 0.14 >More info light-control seedling Original data
257 SA 4mM -0.62 >More info -0.15 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
258 Kas2 roots 2hr KNO3 nitrogen -0.60 >More info -0.16 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
259 seedling 24h after HZE atm-1 -0.54 >More info -0.22 >More info seedling day 2 unirradiated atm-1 24h Original data
260 root protoplasts 40 mM NaCl -0.53 >More info -0.23 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
261 C2 leaf-drought 0.55 >More info 0.21 >More info C2 leaf-well watered Original data GEO bulk
262 (Col-0)+200 uM As -0.55 >More info -0.21 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
263 Col whole leaf 3dpi -0.18 >More info -0.58 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
264 A. halleri highZn-leaf 0.21 >More info 0.55 >More info A. petraea highZn-leaf Original data GEO bulk
265 CT101 ozone -0.52 >More info -0.23 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
266 spx1 spx2 complete -0.54 >More info -0.21 >More info WT complete seedlings Original data
267 OE-HRA1 2HS  -0.51 >More info -0.24 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
268 del1-1 5dpi -0.56 >More info -0.19 >More info Col-0 5dpi mature fully expanded leaves Original data GEO bulk
269 Col-0 ozone -0.56 >More info -0.19 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
270 npr1 sni1 SA -0.51 >More info -0.24 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
271 GiantCell Root 0.53 >More info 0.22 >More info Control Root laser captured giant cells Original data GEO bulk
272 GV3101 3hpi -0.14 >More info -0.61 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
273 camta1-2 -0.24 >More info -0.51 >More info Col-0-WT Original data GEO bulk
274 Laer pretreat GA Flg22 0h -0.50 >More info -0.24 >More info Laer pretreat water control leaf discs Original data GEO bulk
275 Col-0 ozone- (control genotype coi1-16 ein2 sid2) -0.56 >More info -0.18 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
276 atr mitomycin C -0.57 >More info -0.17 >More info WT mitomycin C shoot apical meristem Original data
277 Elevated CO2 AMPLE N DAY -0.53 >More info -0.21 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
278 cs26 long day -0.52 >More info -0.22 >More info Leaves-WT-LD leaf Original data GEO bulk
279 axr2-BR 0.53 >More info 0.21 >More info BR BR dark-grown seedlings Original data GEO bulk
280 WT Bc inoculation 14h -0.56 >More info -0.17 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
281 P. infestans 6 h (leaf) -0.58 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
282 cys-c1 leaf -0.50 >More info -0.23 >More info Leaf-WT leaves Original data GEO bulk
283 WT 30μM arsenate 8 hours. -0.51 >More info -0.22 >More info WT control (not supplemented). Original data
284 pmr5 -0.57 >More info -0.15 >More info Col-0 rosette Original data GEO bulk
285 root - 01% oxygen - 2h 0.21 >More info 0.51 >More info root - 21% oxygen - 2h Original data GEO bulk
286 Laer Flg22 1h -0.56 >More info -0.15 >More info Laer Control leaf discs Original data GEO bulk
287 T6 leaf-drought 0.57 >More info 0.14 >More info T6 leaf-well watered Original data GEO bulk
288 msg2-BR 0.52 >More info 0.19 >More info BR BR dark-grown seedlings Original data GEO bulk
289 Rsch 3d 0.51 >More info 0.20 >More info Rsch CA Leaves Original data
290 inhibitor A Treated -0.53 >More info -0.18 >More info Negative Control Original data GEO bulk
291 Te 3d 0.58 >More info 0.13 >More info Te CA Leaves Original data
292 coi1-16 ein2 sid2 ctrl 0.54 >More info 0.16 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
293 wrky33 Bc inoculation 14h -0.57 >More info -0.13 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
294 cat2-hCO2 0.52 >More info 0.18 >More info Col0-hCO2 grown for five weeks at high CO2 concentration (3000 ppm) in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
295 arf2 brz 0.51 >More info 0.17 >More info arf2 mock Original data GEO bulk
296 Aerobic prt6 0.14 >More info 0.54 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
297 rosette Light Wounded -0.56 >More info -0.11 >More info rosette Light Control Original data GEO bulk
298 pmr5 -0.50 >More info -0.17 >More info Col-0 Original data GEO bulk
299 Var2-1 roots 2hr KNO3 nitrogen -0.50 >More info -0.17 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
300 NFA8 roots 2hr KCl control -0.56 >More info -0.11 >More info Col0 roots 2hr KCl control root Original data GEO bulk
301 WT Root-Pi -0.57 >More info -0.10 >More info WT Root+Pi roots Original data GEO bulk
302 WT Atum 1h -0.10 >More info -0.57 >More info WT 0h Leaf tissue Original data GEO bulk
303 Col-0 ozone- (control genotype tga2 tag5 tga6) -0.51 >More info -0.15 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
304 SQ8 roots 2hr KCl control -0.57 >More info -0.09 >More info Col0 roots 2hr KCl control root Original data GEO bulk
305 ataf1-1 mutant Col-0 Un-inoculated 0.51 >More info 0.14 >More info WT Col-0 Un-inoculated Original data GEO bulk
306 ptpks2 0.10 >More info 0.55 >More info Col-WT leaves Original data GEO bulk
307 seedling 24h after HZE WT -0.55 >More info -0.09 >More info seedling day 2 unirradiated WT 24h Original data
308 IRP1-OE-Fe--root -0.53 >More info -0.11 >More info COL-0-Fe--root root Original data
309 hypoxic 0.53 >More info 0.11 >More info WT aerobic hypoxia Original data GEO bulk
310 Heat 6h-recover 48h -0.56 >More info -0.08 >More info Heat 6h rosettes - 5 leaves stage Original data
311 Laer pretreat JA Flg22 2h -0.51 >More info -0.11 >More info Laer pretreat water control leaf discs Original data GEO bulk
312 hrpA fliC 7h -0.53 >More info -0.08 >More info Mock 7h hrpA fliC Original data GEO bulk
313 C24 UV1 0.50 >More info 0.11 >More info C24 mock UV seedling Original data
314 IAA7mII over-expressor IAA Treated -0.08 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
315 Transgenic LEC2GR Seedling 1h Dex -0.50 >More info -0.10 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
316 HairpinZ 4 h (leaf) -0.57 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
317 Dark 0.54 >More info 0.05 >More info Control Original data GEO bulk
318 FLIGHT TAGESB plate -0.52 >More info -0.06 >More info GROUND CONTROL TAGESB plate Original data
319 46T-CK -0.06 >More info -0.52 >More info WT-CK none Original data
320 Infected Col-0 leaf 0.53 >More info 0.04 >More info Mock Col-0 leaf F. oxysporum leaf Original data GEO bulk
321 Heat shock optimum -0.10 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
322 TaFLS overexpression line (OE1) 0.64 >More info -0.12 >More info Col-0 Rosette leaves Original data
323 rts1-5 -0.55 >More info 0.03 >More info null-mutant whole plant Original data GEO bulk
324 cat2-2; 0h switch to ambient CO2 concentrations; -0.56 >More info 0.05 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
325 WT Shoot Hypoxia -0.04 >More info 0.54 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
326 AvrRpt2 Col-0 6hpi -0.51 >More info 0.03 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
327 CCA1-ox 6am non-polysomal -0.03 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
328 Col-0 WT HL 3h -0.54 >More info 0.10 >More info Col-0 WT HL 0h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
329 penta MeJA 1h -0.54 >More info 0.10 >More info Laer MeJA 1h leaf discs Original data GEO bulk
330 WT Red light 1h -0.53 >More info 0.10 >More info WT Dark 1h deetiolated seedling Original data GEO bulk
331 0h hml -0.51 >More info 0.08 >More info 0h wt Original data
332 WT +Pep2 2h -0.76 >More info 0.35 >More info WT untreated Pep2 Original data GEO bulk
333 cca1-lhy 60m light 0.09 >More info -0.50 >More info 60m light whole seedlings Original data GEO bulk
334 F1 whole seedlings root -0.55 >More info 0.15 >More info Col whole seedlings root Seedlings Original data GEO bulk
335 WT roots - Fe -0.57 >More info 0.17 >More info WT roots + Fe Roots Original data GEO bulk
336 siliques AtHb1 control -0.13 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
337 Laer pretreat GA Flg22 1h -0.33 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
338 Laer pretreat JA Flg22 1h -0.52 >More info 0.16 >More info Laer pretreat water control leaf discs Original data GEO bulk
339 Cor hrpS 24h -0.55 >More info 0.20 >More info Mock 24h Cor hrpS Original data GEO bulk
340 tmm1-inflorescence-tips -0.24 >More info 0.53 >More info Col gl1-inflorescence-tips inflorescence tip Original data GEO bulk
341 Cs shoot -0.26 >More info 0.54 >More info control shoot Original data GEO bulk
342 irradiated leaf (WT 5d) -0.29 >More info 0.51 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
343 amiRAP hypoxic -0.52 >More info 0.33 >More info hypoxic hypoxia Original data GEO bulk
344 Col0-PsmES4326-24hpi -0.42 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
345 Leafminer damaged seedlings -0.57 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk