4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 9 hr Hypoxia 1 hr recovery IP RNA
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List of experiments correlated with "9 hr Hypoxia 1 hr recovery IP RNA"  Help Download transcriptome of top 30
Score Experiment Correlation from
9 hr Hypoxia 1 hr recovery IP RNA		 Correlation to
9 hr Hypoxia 1 hr recovery IP RNA		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 9 hr Hypoxia 1 hr recovery IP RNA 1.00 >More info 1.00 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
2 9 hr Hypoxia 1 hr recovery Total RNA 0.91 >More info 0.86 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
3 9 hr Hypoxia IP RNA 0.86 >More info 0.87 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
4 9 hr Hypoxia Total RNA 0.84 >More info 0.85 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
5 MPK6 ox Shoot Hypoxia 0.65 >More info 0.86 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
6 Heat and anoxia 0.69 >More info 0.78 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
7 Col-0 2HS 0.71 >More info 0.74 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
8 2 hr Hypoxia Total RNA 0.71 >More info 0.72 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
9 Col-0 low oxygen 0.71 >More info 0.71 >More info Col-0 control low oxygen root Original data GEO bulk
10 Anoxia 0.66 >More info 0.76 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
11 shoot hypoxia total 0.63 >More info 0.76 >More info shoot control total Original data GEO bulk
12 WT Shoot Hypoxia 0.61 >More info 0.78 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
13 WT seedlings MV 0.65 >More info 0.73 >More info WT seedlings control Seedlings Original data GEO bulk
14 Col-0 wt Hypoxic 0.65 >More info 0.73 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
15 anac017-2 AntimycinA 3h -0.68 >More info -0.68 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
16 flu 0.60 >More info 0.76 >More info WT Col Original data GEO bulk
17 Col-0 37C 0.65 >More info 0.70 >More info Col-0 22C Original data GEO bulk
18 Ws HS 0.58 >More info 0.76 >More info Ws control heat shocked seedling Original data GEO bulk
19 Cycloheximide 3 h 0.65 >More info 0.69 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
20 plant (tga2-5-6) 4h phytoprostane A1 0.58 >More info 0.76 >More info plant (tga2-5-6) 4h control Original data GEO bulk
21 CMP 4hr 0.66 >More info 0.67 >More info Acetone 4hr root Original data GEO bulk
22 WT AntimycinA 3h 0.65 >More info 0.68 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
23 flu over-tAPX 0.57 >More info 0.76 >More info WT Col Original data GEO bulk
24 rosette Dark Wounded 0.56 >More info 0.76 >More info rosette Dark Control Original data GEO bulk
25 root hypoxia total 0.63 >More info 0.69 >More info root control total Original data GEO bulk
26 Heat 0.61 >More info 0.71 >More info Control 90 minutes at 38°C. Original data GEO bulk
27 WT+H2O2 0.61 >More info 0.70 >More info WT H2O2 Original data GEO bulk
28 Seedling-HeatStressed TOTALmRNA 0.58 >More info 0.73 >More info Seedling-control TOTALmRNA seedling Original data
29 Col-Luc WT 3h antimycin A 0.64 >More info 0.67 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
30 5-Triiodobenzoic acid3 h 0.57 >More info 0.73 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
31 inhibitor A Treated 0.52 >More info 0.76 >More info Negative Control Original data GEO bulk
32 Seedling-HeatStressed POLYSOMESmRNA 0.54 >More info 0.74 >More info Seedling-control POLYSOMESmRNA seedling Original data
33 AgNO3 3 h 0.59 >More info 0.69 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
34 oligomycin 4 h 0.61 >More info 0.66 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
35 Col-0 HS 0.47 >More info 0.80 >More info Col-0 control heat shocked seedling Original data GEO bulk
36 WT (Col-0) heat shock 0.47 >More info 0.80 >More info WT (Col-0) whole seedling Original data GEO bulk
37 Selenate (root) 0.54 >More info 0.71 >More info Ws (root) Original data GEO bulk
38 Root Selenate 0.54 >More info 0.71 >More info Root control 40 micromolar selenate Root Original data GEO bulk
39 WT 30μM arsenate 8 hours. 0.57 >More info 0.68 >More info WT control (not supplemented). Original data
40 Cocultivation 8 hrs root 0.60 >More info 0.65 >More info Mock cocultivation 8 hrs root Root Original data
41 2 hr Hypoxia IP RNA 0.64 >More info 0.60 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
42 dark-hs 0.55 >More info 0.69 >More info dark-control seedling Original data
43 Fenclorim 4hr 0.59 >More info 0.65 >More info Acetone 4hr root Original data GEO bulk
44 roottip hypoxia total 0.54 >More info 0.68 >More info roottip control total Original data GEO bulk
45 Col upon hypoxia 6 hrs 0.61 >More info 0.61 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
46 rosette Light Wounded 0.50 >More info 0.72 >More info rosette Light Control Original data GEO bulk
47 WT flg22 2h 0.62 >More info 0.60 >More info WT 0h Leaf tissue Original data GEO bulk
48 oas-a1.1 Cd 24h 0.45 >More info 0.77 >More info Cd 24h root Shoot Original data GEO bulk
49 Light 0.44 >More info 0.78 >More info Control Original data GEO bulk
50 NJ15 0.47 >More info 0.75 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
51 csn5 (csn5a-2 csn5b) light 0.64 >More info 0.57 >More info WT light Original data GEO bulk
52 Cor 10h 0.57 >More info 0.64 >More info Mock 10h Cor Original data GEO bulk
53 inhibitor B Treated 0.49 >More info 0.72 >More info Negative Control Original data GEO bulk
54 Phytoprostane A1 4 h 0.53 >More info 0.67 >More info Col-0 Original data GEO bulk
55 TNT-seedlings 0.53 >More info 0.67 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
56 dicamba 0.64 >More info 0.56 >More info WT mock whole seedling Original data GEO bulk
57 atmyc2 cop1 Seedling BL 0.56 >More info 0.64 >More info WT Seedling BL Original data GEO bulk
58 npr1-1 SA -0.62 >More info -0.58 >More info Col-0 SA complete seedling Original data
59 WT 2-4h Xanthomonas 0.58 >More info 0.62 >More info WT T0 Original data GEO bulk
60 SA 0.61 >More info 0.59 >More info WT mock Whole seedling Original data GEO bulk
61 CMP 24hr 0.61 >More info 0.59 >More info Acetone 24hr root Original data GEO bulk
62 Leaf wounded 0.44 >More info 0.76 >More info Leaf control vegetative leaf Original data GEO bulk
63 Seedling KUA1-IOX est 0.62 >More info 0.57 >More info Seedling KUA1-IOX mock Original data
64 root protoplasts 40 mM NaCl 0.55 >More info 0.64 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
65 bak1-3 +Pep2 10h 0.58 >More info 0.61 >More info WT +Pep2 10h Pep2 Original data GEO bulk
66 cop1 Seedling BL 0.57 >More info 0.62 >More info WT Seedling BL Original data GEO bulk
67 DFPM 0.60 >More info 0.59 >More info control Original data GEO bulk
68 Col0-PsmES4326-24hpi 0.58 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
69 IMI 4mM 0.63 >More info 0.56 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
70 Rose Bengal 0.5 uM 0.43 >More info 0.76 >More info Control RB and PER Rose Bengal Original data
71 coi1-2 0.51 >More info 0.67 >More info Col-0 mock Whole seedling Original data GEO bulk
72 R. solani AG8 0.56 >More info 0.62 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
73 gai Control 0.61 >More info 0.57 >More info Laer Control leaf discs Original data GEO bulk
74 Protoplast Induced 0.46 >More info 0.72 >More info Uninduced Original data GEO bulk
75 seedlings protease IV 0.52 >More info 0.65 >More info seedlings nontreated control whole seedling Original data
76 WT chitooctaose 0.54 >More info 0.63 >More info WT water Original data GEO bulk
77 seedlings-week-old RECA1-overexpressing
transgenic		 0.54 >More info 0.63 >More info seedlings-week-old Col-0 seedlings Original data
78 pho1 0.49 >More info 0.68 >More info Col2WT Original data GEO bulk
79 Sulfometuron EC50 0.60 >More info 0.56 >More info Carrier Original data GEO bulk
80 WT 3h -P 0.43 >More info 0.73 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
81 safener treated 0.55 >More info 0.60 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
82 GA 0.48 >More info 0.67 >More info none GA Rosette Original data GEO bulk
83 (Col-0)+200 uM As 0.47 >More info 0.68 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
84 Col-0 under 4 days salt 0.62 >More info 0.52 >More info Col-0 under control 4 days salt treatment rosette Original data
85 pepr1-1 Pepr2-3 +Pep2 2h -0.51 >More info -0.63 >More info WT +Pep2 2h Pep2 Original data GEO bulk
86 35S:RPS4 eds1-2 8h -0.58 >More info -0.56 >More info 35S:RPS4 8h leaves Original data
87 (Col-0)+100 uM As 0.47 >More info 0.67 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
88 seedling 12h after HZE WT 0.50 >More info 0.63 >More info seedling day 1 unirradiated WT 12h Original data
89 ataf1-1 mutant Col-0 Bgh inoculated 0.58 >More info 0.55 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
90 PNO8 3 h 0.47 >More info 0.66 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
91 35S::PI ap3-3 35S::AP-GR +DEX 0.41 >More info 0.72 >More info 0hr DEX Original data GEO bulk
92 WT H2O2 3h 0.51 >More info 0.61 >More info WT water 3h 3h_H2O2 Original data GEO bulk
93 root Dosed gold 0.58 >More info 0.54 >More info root No gold .125 mM gold 24 h roots Original data
94 0.125 mM gold 24 h 0.58 >More info 0.54 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
95 Hydrogen Peroxide 500 uM 0.43 >More info 0.69 >More info Control RB and PER Hydrogen Peroxide Original data
96 seedling 6h after HZE WT 0.54 >More info 0.57 >More info seedling day 1 unirradiated WT 6h Original data
97 GST NPP1 4 h (leaf) 0.54 >More info 0.57 >More info Mock 4 h (leaf) Original data Elicitor treatments
98 hira-root -0.52 >More info -0.59 >More info WT-root root Original data
99 cop1 Seedling BL+ABA 0.53 >More info 0.58 >More info WT Seedling BL+ABA Original data GEO bulk
100 oligomycin 1 h 0.42 >More info 0.69 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
101 CMV-WT 0.55 >More info 0.55 >More info Mock-At Aerial tissues Original data GEO bulk
102 9m.KCl 0.53 >More info 0.57 >More info To. KCl 14 day old Roots Original data GEO bulk
103 WT 24H Cold 0.51 >More info 0.59 >More info WT control Original data GEO bulk
104 HopZ1a treated 0.52 >More info 0.58 >More info col Original data GEO bulk
105 WT Root Hypoxia 0.42 >More info 0.68 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
106 MPK6 ox Root Hypoxia 0.42 >More info 0.68 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
107 gun1gun5 far-red pretreated -0.46 >More info -0.64 >More info WT far-red pretreated Original data GEO bulk
108 35S:RPS4 eds1-2 2h -0.42 >More info -0.68 >More info 35S:RPS4 2h leaves Original data
109 WT 6H Cold 0.53 >More info 0.56 >More info WT control Original data GEO bulk
110 chito-octamer 0.45 >More info 0.64 >More info Col Mock Original data GEO bulk
111 WT-Dry 0.44 >More info 0.65 >More info WT-CK dehydration treatment 1h Original data
112 AvrRpt2 Col-0 6hpi 0.57 >More info 0.52 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
113 WT+chitooctaose 0.39 >More info 0.70 >More info WT+water chitooctaose seedlings Original data GEO bulk
114 csn3-1 light 0.55 >More info 0.53 >More info WT light Original data GEO bulk
115 max4 hypocotyl 0.51 >More info 0.57 >More info wt hypocotyl hypocotyl Original data GEO bulk
116 ein2-1 9 hpi A. brassicicola 0.54 >More info 0.53 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
117 GST 4 h (leaf) 0.55 >More info 0.52 >More info Mock 4 h (leaf) Original data Elicitor treatments
118 WT Col-0 Bgh inoculated 0.52 >More info 0.55 >More info WT Col-0 Un-inoculated Original data GEO bulk
119 1h +Pi -0.42 >More info -0.65 >More info 1h -Pi root Original data GEO bulk
120 Laer pretreat GA+JA Flg22 0h 0.58 >More info 0.49 >More info Laer pretreat water control leaf discs Original data GEO bulk
121 WT NAA/flg 1h 0.57 >More info 0.50 >More info WT 0h Leaf tissue Original data GEO bulk
122 ice1 control 0.53 >More info 0.53 >More info WT control Original data GEO bulk
123 +1.6 mM Tween 20 1 h. 0.50 >More info 0.56 >More info +distilled water 1 h. Original data GEO bulk
124 Col whole leaf 5dpi 0.51 >More info 0.55 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
125 chito-tetramer 0.45 >More info 0.61 >More info Col Mock Original data GEO bulk
126 R. solani AG2-1 0.46 >More info 0.60 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
127 (Ws-2)+100 uM As 0.48 >More info 0.58 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
128 P.p 6hai 0.55 >More info 0.50 >More info At-Control roots Original data GEO bulk
129 IAA/inhibitor A Treated 0.50 >More info 0.55 >More info IAA Treated Original data GEO bulk
130 Mutant cry1 (High Light) -0.51 >More info -0.54 >More info Col-0 (High Light) Original data GEO bulk
131 Col-0 9 hpi A. brassicicola 0.53 >More info 0.52 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
132 A. thaliana-A. lyrata hybrid -0.51 >More info -0.54 >More info A. thaliana mature leaves before flowering Original data GEO bulk
133 P.p 30hai 0.53 >More info 0.52 >More info At-Control roots Original data GEO bulk
134 cry1 high light -0.51 >More info -0.54 >More info Col-O high light Original data GEO bulk
135 root - 01% oxygen - 48h 0.41 >More info 0.64 >More info root - 21% oxygen - 48h Original data GEO bulk
136 WT 1wk -P 0.45 >More info 0.60 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
137 toc1-1-77hr 0.45 >More info 0.60 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
138 seedling -S Exp 0.39 >More info 0.66 >More info seedling FN Exp seedling Original data
139 HopZ1a treated ulp1c ulp1d 0.48 >More info 0.57 >More info col Original data GEO bulk
140 Fenclorim 24hr 0.55 >More info 0.49 >More info Acetone 24hr root Original data GEO bulk
141 LTN008-2 aza-dc 0.53 >More info 0.51 >More info LTN012-2 Mock Original data
142 Phaseolicola 2 h (leaf) 0.42 >More info 0.62 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
143 Col in Pi deficiency medium 0.34 >More info 0.70 >More info Col in control medium root Original data GEO bulk
144 TA induced 0.45 >More info 0.59 >More info Methanol TA Suspension cells Original data GEO bulk
145 Col ozone 3h 0.38 >More info 0.66 >More info Col clean-air 3h ozone Original data GEO bulk
146 WT 90-105 min Xanthomonas 0.48 >More info 0.56 >More info WT T0 Original data GEO bulk
147 WT no Pi 0.44 >More info 0.60 >More info WT complete seedlings Original data
148 dorn1-1 Root 100 mM ATP 30 min -0.34 >More info -0.70 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
149 shoots bhlh100/101 0uM Fe 0.54 >More info 0.49 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
150 Botrytis cinerea 48h 0.52 >More info 0.51 >More info control 48h Original data GEO bulk
151 Salt Stress 24 h (root) 0.53 >More info 0.50 >More info Stress mock 24 h (root) Original data Stress treatments
152 K starvation (shoot) 0.46 >More info 0.57 >More info Ws (shoot) Original data GEO bulk
153 Shoot -K 0.46 >More info 0.57 >More info Control-shoot Original data GEO bulk
154 smg7b-1 0.51 >More info 0.51 >More info WT whole plant Original data GEO bulk
155 WT-SA 0.50 >More info 0.52 >More info WT-mock spray 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
156 WT powdery mildew 0.50 >More info 0.52 >More info WT control inoculation with the powdery mildew pathogen Original data GEO bulk
157 ARR22-ox (t-zeatin 3 h) 0.55 >More info 0.47 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
158 root - 01% oxygen - 2h 0.28 >More info 0.74 >More info root - 21% oxygen - 2h Original data GEO bulk
159 oas-a1.1 Cd 18h 0.40 >More info 0.62 >More info Cd 18h root Root Original data GEO bulk
160 Aerobic e1 ate2 0.35 >More info 0.67 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
161 CMV-A2b mutant 0.43 >More info 0.59 >More info Mock-At Aerial tissues Original data GEO bulk
162 DC3000 24h 0.47 >More info 0.55 >More info Mock 24h DC3000 Original data GEO bulk
163 col-5 DC3000 12h 0.46 >More info 0.56 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
164 Mutant siz1-3 (Drought) 0.51 >More info 0.50 >More info Col-0 (Drought) Original data GEO bulk
165 35S:RPS4 eds1-2 24h -0.53 >More info -0.48 >More info 35S:RPS4 24h leaves Original data
166 siz1-3 drought 0.51 >More info 0.50 >More info Col-0 drought Original data GEO bulk
167 Laer treat paclobutrazol (PAC) 0.56 >More info 0.45 >More info Laer Control leaf discs Original data GEO bulk
168 Dark 40min pls UV-AB 5min 0.48 >More info 0.53 >More info Dark 45 min Original data Light treatments
169 Wounding Stress3 h (shoot) 0.48 >More info 0.53 >More info Stress mock 3 h (shoot) Original data Stress treatments
170 21h-DC3000 hrpA -0.34 >More info -0.67 >More info 21h-DC3000 leaves Original data GEO bulk
171 toc1-1-53hr 0.39 >More info 0.62 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
172 6h +Pi -0.49 >More info -0.52 >More info 6h -Pi root Original data GEO bulk
173 low CO2 + light 0.43 >More info 0.58 >More info normal CO2 + light Original data GEO bulk
174 vte2 leaves 48h LT 0.49 >More info 0.52 >More info Col leaves 48h LT 48h 9-11th adult leaves Original data
175 CLO 4mM 0.57 >More info 0.43 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
176 Roots Cd -0.53 >More info -0.47 >More info Roots control Cd Root Original data GEO bulk
177 WT flg22 1h 0.51 >More info 0.49 >More info WT 0h Leaf tissue Original data GEO bulk
178 upf3 0.49 >More info 0.51 >More info WT whole plant Original data GEO bulk
179 Nicotinamide-53hr 0.47 >More info 0.53 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
180 15m.KCl 0.48 >More info 0.52 >More info To. KCl 14 day old Roots Original data GEO bulk
181 ckh1 CK200 0.43 >More info 0.57 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
182 cpr5 0.45 >More info 0.55 >More info WT(COL) Original data GEO bulk
183 BLM+INA 0.44 >More info 0.56 >More info CK BLM and INA seedling Original data
184 WT 30μM phosphate 8 hours. -0.40 >More info -0.60 >More info WT control (not supplemented). Original data
185 seedling h S Exp -0.39 >More info -0.61 >More info seedling -S Exp seedling Original data
186 root stele 40 mM NaCls 0.56 >More info 0.43 >More info root stele Original data GEO bulk
187 WT Shoot-Pi 0.44 >More info 0.55 >More info WT Shoot+Pi shoots Original data GEO bulk
188 Laer pretreat GA Flg22 1h 0.28 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
189 Col-0-avrB-6h 0.43 >More info 0.56 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
190 Heat shock optimum 0.34 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
191 Light 0.5h polysome-bound 0.48 >More info 0.51 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
192 WT 3H Cold 0.33 >More info 0.66 >More info WT control Original data GEO bulk
193 bHLH122 ox -0.36 >More info -0.63 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
194 sicy-192 gun1-101 cotyledons 0.47 >More info 0.52 >More info WT cotyledons cotyledons Original data
195 Osmotic Stress 24 h (shoot) 0.56 >More info 0.42 >More info Stress mock 24 h (shoot) Original data Stress treatments
196 Primisulfuron EC50 0.51 >More info 0.47 >More info Carrier (primisulfuron) Original data GEO bulk
197 Cor hrpS 10h 0.51 >More info 0.47 >More info Mock 10h Cor hrpS Original data GEO bulk
198 HSP90 Reduced RNAi-A2 0.51 >More info 0.47 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
199 Cold Stress 24 h (shoot) 0.46 >More info 0.52 >More info Stress mock 24 h (shoot) Original data Stress treatments
200 ein5-1 ski2-3 0.46 >More info 0.52 >More info Col-0 aerial tissue Original data
201 plant (Col-0) 4h phytoprostane A1 0.43 >More info 0.55 >More info plant (tga2-5-6) 4h control Original data GEO bulk
202 4C 1h 0.27 >More info 0.71 >More info 4C 0h Original data GEO bulk
203 abi1 hypocotyl 0.25 >More info 0.73 >More info Ler hypocotyl hypocotyl Original data GEO bulk
204 Pst-DC3000(avrRpm1)-4hpi 0.45 >More info 0.53 >More info Pst-DC3000-4hpi Original data GEO bulk
205 Col BTH 0.31 >More info 0.67 >More info Col rosettes Original data GEO bulk
206 rcf1-1 cold 24h 0.50 >More info 0.47 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
207 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.56 >More info 0.41 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
208 ABA DFPM 0.53 >More info 0.44 >More info control Original data GEO bulk
209 B.cinerea 18 h infection 0.53 >More info 0.44 >More info Mock 18 h Original data Botrytis cinerea infection
210 Botrytis cinerea 18h 0.53 >More info 0.44 >More info control 18h Original data GEO bulk
211 IAA/inhibitor B Treated 0.30 >More info 0.67 >More info IAA Treated Original data GEO bulk
212 P.p 2.5hai 0.41 >More info 0.56 >More info At-Control roots Original data GEO bulk
213 Cor 24h 0.47 >More info 0.50 >More info Mock 24h Cor Original data GEO bulk
214 col-5 hrpA 12h 0.44 >More info 0.53 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
215 leaf13 0.39 >More info 0.58 >More info unwounded leaves none Original data GEO bulk
216 Leafminer damaged seedlings 0.40 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
217 FLIGHT TAGESB plate6 ROOTS 0.40 >More info 0.56 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
218 Laer Flg22 1h 0.55 >More info 0.41 >More info Laer Control leaf discs Original data GEO bulk
219 RRE2 Chitin 0.50 >More info 0.46 >More info Chitin Original data GEO bulk
220 stn7-1 -0.50 >More info -0.46 >More info Col-0 rosette leaves Original data GEO bulk
221 Laer Flg22+GA 1h 0.53 >More info 0.43 >More info Laer Control leaf discs Original data GEO bulk
222 Heat shock 20%Inhibition 0.46 >More info 0.50 >More info Heat shock baseline Photosynthesis at 20% inhibition from optimum leaf first fully expanded Original data GEO bulk
223 pepr1-1 Pepr2-3 +Pep2 10h -0.44 >More info -0.52 >More info WT +Pep2 10h Pep2 Original data GEO bulk
224 P.syringae AvrRpt2 4 h (leaf) 0.40 >More info 0.55 >More info Mock 4 h (leaf) Original data Elicitor treatments
225 ceh1 mutant 0.50 >More info 0.45 >More info Parent line Original data
226 Triazolopyrimidine EC50 0.51 >More info 0.44 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
227 sid2-2 9 hpi A. brassicicola 0.50 >More info 0.45 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
228 Lipopolysaccaride4 h (leaf) 0.52 >More info 0.43 >More info Mock 4 h (leaf) Original data Elicitor treatments
229 Col-0 DCA 48h 0.37 >More info 0.58 >More info Col-0 MOCK 48h Original data GEO bulk
230 Aerobic prt6 0.26 >More info 0.68 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
231 AFB1 flg22 2h 0.51 >More info 0.43 >More info WT 0h Leaf tissue Original data GEO bulk
232 seedling 1.5h after Gamma WT 0.51 >More info 0.43 >More info seedling day 1 unirradiated WT 1.5h Original data
233 edr1 18 h powdery mildew 0.51 >More info 0.43 >More info Col-0 18 h powdery mildew Original data GEO bulk
234 root - 04% oxygen - 2h 0.10 >More info 0.84 >More info root - 21% oxygen - 2h Original data GEO bulk
235 HS 0.37 >More info 0.57 >More info noneHS Original data GEO bulk
236 npr1 sni1 brca2a SA -0.36 >More info -0.58 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
237 AtLysM RLK1 mutant chitooctaose -0.41 >More info -0.53 >More info WT chitooctaose Original data GEO bulk
238 Laer Flg22+GA 2h 0.56 >More info 0.37 >More info Laer Control leaf discs Original data GEO bulk
239 CeO2 germinant -0.38 >More info -0.55 >More info Millipore Water germinant CeO2 seedling Original data
240 Te ozone 0.51 >More info 0.42 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
241 aba1 hypocotyl 0.33 >More info 0.60 >More info Ler hypocotyl hypocotyl Original data GEO bulk
242 WT cold 12 h 0.39 >More info 0.53 >More info WT cold 0h GSM955987 seedlings Original data GEO bulk
243 Transgenic LEC2GR Seedling 1h Dex 0.39 >More info 0.53 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
244 ANOXIA -0.34 >More info -0.58 >More info ANOXIA+SUCROSE Original data GEO bulk
245 npr1 sni1 SA 0.35 >More info 0.57 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
246 del1-1 mutant 5d uninfected 0.42 >More info 0.50 >More info Col-0 5d uininfected mature fully expanded leaves Original data GEO bulk
247 cell culture 4 h phytoprostane A1 0.38 >More info 0.53 >More info cell culture 4 h control Original data GEO bulk
248 Light 0.5h steady-state 0.40 >More info 0.51 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
249 Leaf systemic 0.28 >More info 0.63 >More info Leaf control vegetative leaf Original data GEO bulk
250 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.50 >More info 0.41 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
251 SCR-GR Time 12H Dex 0.57 >More info 0.34 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
252 cat2-short-day 2d 0.32 >More info 0.59 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
253 Shoot -Cs 0.32 >More info 0.59 >More info Control-shoot Original data GEO bulk
254 mbd11 mutant thaliana 10-day-old seedling 0.50 >More info 0.40 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
255 rdr6-15 -0.52 >More info -0.38 >More info Col-0 Original data GEO bulk
256 short 8-degree- 0.36 >More info 0.54 >More info control short Original data GEO bulk
257 IXB induced 0.36 >More info 0.54 >More info Methanol IXB Suspension cells Original data GEO bulk
258 Whole root - low pH 12H 0.36 >More info 0.54 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
259 WT cold 24h 0.40 >More info 0.50 >More info WT cold 0h cold at 4°C seedlings Original data GEO bulk
260 -Sulfate 24 h 0.19 >More info 0.71 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
261 WT heat shock 0.29 >More info 0.61 >More info WT untreated above-ground parts Original data GEO bulk
262 Whole root - S 3H 0.31 >More info 0.59 >More info Whole root - S 0H Original data GEO bulk
263 gh3.5-1D 48 hpi 0.51 >More info 0.38 >More info Col-0 uninoculated Original data GEO bulk
264 Col-0 ozone 0.50 >More info 0.39 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
265 coi1-16 ein2 sid2 ozone 0.51 >More info 0.38 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
266 SA 4mM 0.54 >More info 0.35 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
267 miR393 flg22 1h 0.38 >More info 0.51 >More info WT 0h Leaf tissue Original data GEO bulk
268 4C 2h(SOIL) 0.27 >More info 0.62 >More info 4C 0h(SOIL) Original data GEO bulk
269 WT 1mM phosphate 8 hours. -0.27 >More info -0.62 >More info WT control (not supplemented). Original data
270 cat2-2; 8h switch to ambient CO2 concentrations; 0.34 >More info 0.54 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
271 Salt Stress 24 h (shoot) 0.51 >More info 0.37 >More info Stress mock 24 h (shoot) Original data Stress treatments
272 Osmotic Stress 24 h (root) 0.53 >More info 0.35 >More info Stress mock 24 h (root) Original data Stress treatments
273 Laer Flg22 2h 0.55 >More info 0.32 >More info Laer Control leaf discs Original data GEO bulk
274 16h Col-0 0.32 >More info 0.55 >More info 00h Col-0 Original data GEO bulk
275 ein3 eil1 0.52 >More info 0.35 >More info Col-0 mock Whole seedling Original data GEO bulk
276 SLWF infested 0.61 >More info 0.26 >More info SLWF uninfested rosette tissue Original data GEO bulk
277 CT101 ozone 0.52 >More info 0.34 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
278 FHY3p dark+DEX -0.56 >More info -0.30 >More info FHY3p dark+mock Original data GEO bulk
279 20h Col-0 0.27 >More info 0.59 >More info 00h Col-0 Original data GEO bulk
280 siliques AtHb1 control 0.33 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
281 GO5; 8h switch to ambient CO2 concentrations; 0.29 >More info 0.56 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
282 Col-0 INA 48h 0.35 >More info 0.50 >More info Col-0 MOCK 48h Original data GEO bulk
283 WT-16ºC -0.35 >More info -0.50 >More info WT-23ºC Original data GEO bulk
284 Imbibed 1 h (seed) 0.30 >More info 0.54 >More info Dry seed Original data Time course of early seed germination
285 wnk8-1 untreated -0.32 >More info -0.52 >More info Col-0 untreated seedlings Original data GEO bulk
286 whole roots 140 mM NaCl 1 hour 0.50 >More info 0.33 >More info whole roots standard Original data GEO bulk
287 root callus inducing medium 24h -0.51 >More info -0.32 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
288 cat2-short-day 4d 0.20 >More info 0.63 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
289 ISOXABEN -0.31 >More info -0.52 >More info CON 0.1 mM ISOXABEN Original data GEO bulk
290 ex2 flu dark 8hours/30 minute light 0.22 >More info 0.61 >More info col dark 8hours/30 minute light Original data GEO bulk
291 wrky33 Bc inoculation 14h 0.51 >More info 0.31 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
292 Red/FR Light45min 0.02 >More info 0.80 >More info FarRed Light 45min Original data Light treatments
293 12m.KCl 0.27 >More info 0.55 >More info To. KCl 14 day old Roots Original data GEO bulk
294 bak1-3 +Pep2 2h 0.28 >More info 0.54 >More info WT +Pep2 2h Pep2 Original data GEO bulk
295 sfr6 drought -0.31 >More info -0.51 >More info WT drought All aerial tissue Original data GEO bulk
296 gpa1 -ABA GC -0.24 >More info -0.58 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
297 root callus inducing medium 48 h -0.50 >More info -0.31 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
298 sav1-1 light 0.31 >More info 0.50 >More info Col-0 light seedlings Original data GEO bulk
299 short 12-degree- 0.27 >More info 0.53 >More info control short Original data GEO bulk
300 Col whole leaf 3dpi 0.29 >More info 0.51 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
301 root - 08% oxygen - 30min 0.07 >More info 0.72 >More info root - 21% oxygen - 30min Original data GEO bulk
302 dense canopy 0.24 >More info 0.55 >More info single (control) petiole Original data GEO bulk
303 light-hs 0.23 >More info 0.56 >More info light-control seedling Original data
304 root - 01% oxygen - 30min 0.18 >More info 0.60 >More info root - 21% oxygen - 30min Original data GEO bulk
305 til1-1 22C 0.26 >More info 0.52 >More info Col-0 22C Original data GEO bulk
306 protoplasts T1 [flg22] 0.26 >More info 0.52 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
307 amiRAP aerobic -0.17 >More info -0.61 >More info WT aerobic aerobic Original data GEO bulk
308 toc1-1-85hr 0.27 >More info 0.50 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
309 root - 04% oxygen - 48h 0.01 >More info 0.75 >More info root - 21% oxygen - 48h Original data GEO bulk
310 root - 04% oxygen - 30min 0.05 >More info 0.70 >More info root - 21% oxygen - 30min Original data GEO bulk
311 IAA7mII over-expressor IAA Treated 0.06 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
312 Mutant sav3-2 (WL) 0.16 >More info 0.58 >More info Col-0 (WL) Original data GEO bulk
313 opr3 JA 0.5 h 0.13 >More info 0.61 >More info opr3 0 h Original data GEO bulk
314 sav3-2 light 0.16 >More info 0.58 >More info Col-0 light seedlings Original data GEO bulk
315 root - 08% oxygen - 2h 0.04 >More info 0.69 >More info root - 21% oxygen - 2h Original data GEO bulk
316 bak1-3 untreated 0.15 >More info 0.57 >More info WT untreated untreated Original data GEO bulk
317 anac017-2 water 3h 0.15 >More info 0.57 >More info WT water 3h 3h_water Original data GEO bulk
318 opr3 OPDA 2 h 0.15 >More info 0.57 >More info opr3 0 h Original data GEO bulk
319 Kas-1 -Fe 24h -0.17 >More info -0.54 >More info Kas-1 +Fe 24h roots Original data GEO bulk
320 Kas -Fe 24h Roots -0.17 >More info -0.54 >More info Kas +Fe 24h Roots Original data GEO bulk
321 desiccated mature pollen grains -0.16 >More info -0.55 >More info hydrated pollen grains Original data GEO bulk
322 6h volatiles Sp. HRO-C48 0.12 >More info 0.59 >More info 6h untreated whole seedling Original data GEO bulk
323 35S:PCO1 hypoxia -0.18 >More info -0.52 >More info WT hypoxia whole rosette Original data
324 FarRed Light 45min -0.12 >More info -0.56 >More info White Light 45min Original data Light treatments
325 35S:ATR1 like miR -0.17 >More info -0.51 >More info WT for miR Original data GEO bulk
326 bri1-116 -0.05 >More info 0.73 >More info Col seedling Original data GEO bulk
327 phyB mutant 22C 4hrs -0.13 >More info -0.52 >More info L22-4hrs whole plant excluding roots Original data GEO bulk
328 vte2-1 1d vernalization 0.08 >More info 0.56 >More info WT 1d vernalization Original data GEO bulk
329 AsAKiin11 T2 0.13 >More info 0.51 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
330 Shoot -P 0.04 >More info 0.59 >More info Shoot Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
331 Infected pft1 leaf 0.10 >More info 0.51 >More info Infected Col-0 leaf F. oxysporum leaf Original data GEO bulk
332 Col-0 24hpi A. brassicicola 0.55 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
333 35SAvr -0.02 >More info 0.59 >More info Ecotype Col Original data GEO bulk
334 seed germinating in countinuous light 24h SL -0.11 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
335 HairpinZ 4 h (leaf) 0.56 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
336 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
337 Shoot apex inflorescence (after bolting) -0.16 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
338 NahG 0.10 >More info -0.56 >More info Col-0 Leaves Original data GEO bulk
339 Col PSTDC3000 24h 0.58 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
340 root - 08% oxygen - 48h -0.06 >More info 0.50 >More info root - 21% oxygen - 48h Original data GEO bulk