4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on WT Shoot Hypoxia
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List of experiments correlated with "WT Shoot Hypoxia"  Help Download transcriptome of top 30
Score Experiment Correlation from
WT Shoot Hypoxia		 Correlation to
WT Shoot Hypoxia		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 WT Shoot Hypoxia 1.00 >More info 1.00 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
2 MPK6 ox Shoot Hypoxia 0.94 >More info 0.85 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
3 shoot hypoxia total 0.86 >More info 0.89 >More info shoot control total Original data GEO bulk
4 Col-0 2HS 0.83 >More info 0.86 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
5 Col-0 wt Hypoxic 0.87 >More info 0.81 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
6 2 hr Hypoxia Total RNA 0.82 >More info 0.82 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
7 WT Root Hypoxia 0.82 >More info 0.82 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
8 root - 01% oxygen - 2h 0.79 >More info 0.84 >More info root - 21% oxygen - 2h Original data GEO bulk
9 2 hr Hypoxia IP RNA 0.84 >More info 0.78 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
10 9 hr Hypoxia IP RNA 0.85 >More info 0.73 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
11 MPK6 ox Root Hypoxia 0.80 >More info 0.78 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
12 root - 04% oxygen - 2h 0.79 >More info 0.78 >More info root - 21% oxygen - 2h Original data GEO bulk
13 9 hr Hypoxia Total RNA 0.84 >More info 0.73 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
14 roottip hypoxia total 0.82 >More info 0.75 >More info roottip control total Original data GEO bulk
15 root hypoxia total 0.82 >More info 0.73 >More info root control total Original data GEO bulk
16 root - 08% oxygen - 2h 0.74 >More info 0.78 >More info root - 21% oxygen - 2h Original data GEO bulk
17 root - 01% oxygen - 30min 0.78 >More info 0.73 >More info root - 21% oxygen - 30min Original data GEO bulk
18 root - 04% oxygen - 30min 0.71 >More info 0.76 >More info root - 21% oxygen - 30min Original data GEO bulk
19 root - 08% oxygen - 30min 0.71 >More info 0.75 >More info root - 21% oxygen - 30min Original data GEO bulk
20 Anoxia 0.74 >More info 0.70 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
21 Aerobic e1 ate2 0.69 >More info 0.73 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
22 9 hr Hypoxia 1 hr recovery Total RNA 0.78 >More info 0.61 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
23 root - 04% oxygen - 48h 0.62 >More info 0.77 >More info root - 21% oxygen - 48h Original data GEO bulk
24 9 hr Hypoxia 1 hr recovery IP RNA 0.78 >More info 0.61 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
25 Aerobic prt6 0.64 >More info 0.72 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
26 WT seedlings MV 0.70 >More info 0.60 >More info WT seedlings control Seedlings Original data GEO bulk
27 Col-0 low oxygen 0.73 >More info 0.56 >More info Col-0 control low oxygen root Original data GEO bulk
28 Light 0.78 >More info 0.48 >More info Control Original data GEO bulk
29 root - 01% oxygen - 48h 0.67 >More info 0.59 >More info root - 21% oxygen - 48h Original data GEO bulk
30 hypoxic 0.76 >More info 0.50 >More info WT aerobic hypoxia Original data GEO bulk
31 estradiole-induced ANAC059 -0.75 >More info -0.49 >More info transgenic (empty vector inducible system) Original data GEO bulk
32 IAA/inhibitor A Treated 0.75 >More info 0.48 >More info IAA Treated Original data GEO bulk
33 pepr1-1 Pepr2-3 untreated 0.57 >More info 0.66 >More info WT untreated untreated Original data GEO bulk
34 mdh -0.67 >More info -0.55 >More info Col Original data GEO bulk
35 35S:PCO1 hypoxia -0.61 >More info -0.60 >More info WT hypoxia whole rosette Original data
36 CeO2 germinant -0.69 >More info -0.51 >More info Millipore Water germinant CeO2 seedling Original data
37 Cs root -0.65 >More info -0.54 >More info control root Original data GEO bulk
38 Col upon hypoxia 6 hrs 0.78 >More info 0.39 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
39 Col-0 low oxygen 0.78 >More info 0.38 >More info Col-0 Original data GEO bulk
40 1.5 hr ammonium 0.75 >More info 0.41 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
41 TNT-seedlings 0.61 >More info 0.54 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
42 SCR-GR Time 12H Dex 0.64 >More info 0.48 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
43 ein3 eil1 JA 0.54 >More info 0.58 >More info JA Whole seedling Original data GEO bulk
44 shoot-10 μM DEX- 24hr 0.49 >More info 0.63 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
45 IRP1-OE-Fe--shoot 0.68 >More info 0.43 >More info COL-0-Fe--shoot shoot Original data
46 20m.KCl -0.59 >More info -0.52 >More info To. KCl 14 day old Roots Original data GEO bulk
47 shoot-10 μM DEX- 12 hr 0.59 >More info 0.52 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
48 siliques AtHb1 control 0.58 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
49 TA induced 0.66 >More info 0.44 >More info Methanol TA Suspension cells Original data GEO bulk
50 FHY3p dark+DEX -0.74 >More info -0.36 >More info FHY3p dark+mock Original data GEO bulk
51 Ws seedlings -0.64 >More info -0.45 >More info ged1 seedlings Original data GEO bulk
52 root callus inducing medium 24h -0.64 >More info -0.45 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
53 ged1 seedlings 0.64 >More info 0.45 >More info Ws seedlings Original data GEO bulk
54 vtc2 mature somatic embryo 0.58 >More info 0.51 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
55 RRE1 Chitin 0.69 >More info 0.39 >More info Chitin Original data GEO bulk
56 P.p 2.5hai 0.68 >More info 0.40 >More info At-Control roots Original data GEO bulk
57 empty vector IAA Treated -0.60 >More info -0.48 >More info empty vector mock Original data GEO bulk
58 Bay-0-1h IAA -0.55 >More info -0.52 >More info Bay-0-0h IAA whole plant Original data GEO bulk
59 Col-O high light 0.62 >More info 0.45 >More info Col-O bule light Original data GEO bulk
60 RRE2 Chitin 0.70 >More info 0.36 >More info Chitin Original data GEO bulk
61 root callus inducing medium 12 h -0.67 >More info -0.39 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
62 prt6-1 0.66 >More info 0.40 >More info Col-0 imbibed for 24 h Pre-germinated seeds Original data GEO bulk
63 OE-HRA1 2HS  -0.58 >More info -0.48 >More info Col-0 2HS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
64 estradiole-induced ANAC092 -0.69 >More info -0.37 >More info transgenic (empty vector inducible system) Original data GEO bulk
65 cngc1 -0.65 >More info -0.39 >More info Ws-2 Seedlings Original data GEO bulk
66 ein3 eil1 0.59 >More info 0.45 >More info Col-0 mock Whole seedling Original data GEO bulk
67 DFPM 0.60 >More info 0.44 >More info control Original data GEO bulk
68 Sha-1h IAA -0.63 >More info -0.41 >More info Sha-0h IAA whole plant Original data GEO bulk
69 amiRAP hypoxic -0.68 >More info -0.36 >More info hypoxic hypoxia Original data GEO bulk
70 root - 08% oxygen - 48h 0.44 >More info 0.60 >More info root - 21% oxygen - 48h Original data GEO bulk
71 P.p 6hai 0.63 >More info 0.40 >More info At-Control roots Original data GEO bulk
72 shoot-10 μM DEX- 6 hr 0.56 >More info 0.47 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
73 Col BTH 0.36 >More info 0.67 >More info Col rosettes Original data GEO bulk
74 BI-1-30min IAA -0.70 >More info -0.32 >More info BI-1-0h IAA whole plant Original data GEO bulk
75 oas-a1.1 Cd 18h 0.59 >More info 0.43 >More info Cd 18h root Root Original data GEO bulk
76 upf3 0.52 >More info 0.49 >More info WT whole plant Original data GEO bulk
77 cngc19 0.66 >More info 0.35 >More info Col-0 root Original data GEO bulk
78 toc1-1-65hr 0.52 >More info 0.48 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
79 oas-a1.1 root -0.64 >More info -0.36 >More info WT-Untreated Root Original data GEO bulk
80 ex2 flu dark 8hours/30 minute light 0.48 >More info 0.52 >More info col dark 8hours/30 minute light Original data GEO bulk
81 ptpks2 -0.39 >More info -0.61 >More info Col-WT leaves Original data GEO bulk
82 gun1gun5 Norflurazon 0.68 >More info 0.31 >More info Norflurazon a herbicide (Norflurazon) seedling Original data GEO bulk
83 PNO8 3 h 0.54 >More info 0.45 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
84 Col in Pi deficiency medium 0.49 >More info 0.50 >More info Col in control medium root Original data GEO bulk
85 Mutant cry1 -0.69 >More info -0.29 >More info Col-0 Original data GEO bulk
86 inhibitor B Treated 0.52 >More info 0.46 >More info Negative Control Original data GEO bulk
87 root callus inducing medium 48 h -0.57 >More info -0.41 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
88 cry1 low light -0.69 >More info -0.29 >More info Col-O low light Original data GEO bulk
89 npr1-1 SA -0.66 >More info -0.31 >More info Col-0 SA complete seedling Original data
90 tumour 0.79 >More info 0.18 >More info non-tumor tumour Original data GEO bulk
91 Col0-PsmES4326-24hpi 0.35 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
92 Seedling KUA1-IOX est 0.56 >More info 0.39 >More info Seedling KUA1-IOX mock Original data
93 JA 0.55 >More info 0.40 >More info Col-0 mock Whole seedling Original data GEO bulk
94 BI-1-1h IAA -0.59 >More info -0.36 >More info BI-1-0h IAA whole plant Original data GEO bulk
95 P.p 10.5hai 0.60 >More info 0.35 >More info At-Control roots Original data GEO bulk
96 Col0 roots 2hr KNO3 nitrogen -0.63 >More info -0.32 >More info Col0 roots 2hr KCl control root Original data GEO bulk
97 Heat shock optimum 0.30 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
98 FOX line K16331 0.59 >More info 0.35 >More info empty vector control (T3) FOX lines Original data GEO bulk
99 tt4 UV 0.73 >More info 0.21 >More info UV aerial region Original data GEO bulk
100 gun5 control 0.62 >More info 0.32 >More info Col-0 control Original data GEO bulk
101 Tsu -Fe 48h Shoots 0.51 >More info 0.43 >More info Tsu +Fe 24h Shoots Original data GEO bulk
102 35S::MBF1c 0.53 >More info 0.40 >More info control Original data GEO bulk
103 0h ivd -0.36 >More info -0.57 >More info 0h wt Original data
104 gun1gun5 far-red pretreated -0.54 >More info -0.38 >More info WT far-red pretreated Original data GEO bulk
105 8 hr ammonium 0.68 >More info 0.24 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
106 Heat and anoxia 0.39 >More info 0.53 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
107 1 h Light Total RNA -0.50 >More info -0.42 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
108 Mutant iaa5_6_19 0.59 >More info 0.33 >More info Col Original data GEO bulk
109 Bay-0-3h IAA -0.56 >More info -0.35 >More info Bay-0-0h IAA whole plant Original data GEO bulk
110 0.2µM SMX -0.68 >More info -0.23 >More info control Whole seedling Original data GEO bulk
111 flu over-tAPX 0.37 >More info 0.54 >More info WT Col Original data GEO bulk
112 whole roots 140 mM NaCl 30 minutes 0.40 >More info 0.51 >More info whole roots standard Original data GEO bulk
113 flu 0.34 >More info 0.56 >More info WT Col Original data GEO bulk
114 bHLH122 ox -0.40 >More info -0.50 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
115 seed germinating in countinuous light 24h SL 0.22 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
116 opr3 JA 0.5 h 0.27 >More info 0.62 >More info opr3 0 h Original data GEO bulk
117 ALC Toc1 light-light Mock -0.60 >More info -0.29 >More info Col light-light Mock no ethanol Original data GEO bulk
118 Col-0 (t-zeatin 3 h) -0.57 >More info -0.32 >More info Col-0 Original data Cytokinin treatment of seedlings
119 Sha-3h IAA -0.68 >More info -0.20 >More info Sha-0h IAA whole plant Original data GEO bulk
120 mbd11 mutant thaliana 10-day-old seedling 0.61 >More info 0.27 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
121 Genotoxic Stress 3 h (root) -0.63 >More info -0.25 >More info Stress mock 3 h (root) Original data Stress treatments
122 Red/FR Light45min 0.12 >More info 0.76 >More info FarRed Light 45min Original data Light treatments
123 ein2 1% sucrose 14-day-old 0.35 >More info 0.53 >More info Col-0 1% sucrose 14-day-old Original data GEO bulk
124 bri1-116 0.15 >More info 0.73 >More info Col seedling Original data GEO bulk
125 24h +Pi -0.70 >More info -0.18 >More info 24h -Pi root Original data GEO bulk
126 ga1-3/brm-1 0.71 >More info 0.16 >More info wt shoots Original data GEO bulk
127 250uM K-nitrate 20min roots -0.59 >More info -0.28 >More info 250uM KCl 20min roots Roots Original data GEO bulk
128 10min Reillumination Total RNA -0.30 >More info -0.57 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
129 gai Control 0.53 >More info 0.33 >More info Laer Control leaf discs Original data GEO bulk
130 RRE1 0.60 >More info 0.26 >More info Col C Original data GEO bulk
131 rsl4 -0.69 >More info -0.17 >More info Col-0 Control root Original data GEO bulk
132 gid1a gid1b-1 gid1c-2 mock 1 hr -0.58 >More info -0.28 >More info ga-1 mock 1 hr Original data GEO bulk
133 inhibitor A Treated 0.36 >More info 0.50 >More info Negative Control Original data GEO bulk
134 ckh1 CK25 0.57 >More info 0.29 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
135 Octopus mutant DYG25 -0.66 >More info -0.19 >More info WS Original data GEO bulk
136 6m.KNO3 -0.68 >More info -0.17 >More info To. KNO3 14 day old Roots Original data GEO bulk
137 IMI 4mM 0.31 >More info 0.54 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
138 35S::HRE1 Hypoxic 0.59 >More info 0.26 >More info Col-0 wt Hypoxic hypoxic treatment Original data GEO bulk
139 1.5 hr nitrate 0.71 >More info 0.14 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
140 Mutant axr3-1 0.61 >More info 0.24 >More info Col Original data GEO bulk
141 35S::ZAT12 -0.68 >More info -0.16 >More info gl1 Original data GEO bulk
142 BI-1-3h IAA -0.66 >More info -0.18 >More info BI-1-0h IAA whole plant Original data GEO bulk
143 whole roots -Fe 72 hour 0.57 >More info 0.27 >More info whole roots standard Original data GEO bulk
144 cngc1-3 0.62 >More info 0.22 >More info Col-0 root Original data GEO bulk
145 Fe starvation 72 h 0.57 >More info 0.27 >More info Control Original data GEO bulk
146 Col-0 HS 0.21 >More info 0.63 >More info Col-0 control heat shocked seedling Original data GEO bulk
147 WT H2O2 3h 0.25 >More info 0.59 >More info WT water 3h 3h_H2O2 Original data GEO bulk
148 WT (Col-0) heat shock 0.21 >More info 0.63 >More info WT (Col-0) whole seedling Original data GEO bulk
149 Stem tissue 5 days NAA 0.67 >More info 0.16 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
150 auxin and brassinazole seedlings 0.50 >More info 0.33 >More info auxin seedlings Original data GEO bulk
151 whole roots -Fe 48 hour 0.56 >More info 0.27 >More info whole roots standard Original data GEO bulk
152 scl3 0.67 >More info 0.16 >More info Col-0 whole root Original data GEO bulk
153 upf1 0.32 >More info 0.51 >More info WT whole plant Original data GEO bulk
154 Fenclorim 4hr 0.32 >More info 0.51 >More info Acetone 4hr root Original data GEO bulk
155 Leafminer damaged seedlings 0.27 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
156 Rose Bengal 0.5 uM 0.20 >More info 0.63 >More info Control RB and PER Rose Bengal Original data
157 mbd4 mutant thaliana 10-day-old seedling 0.57 >More info 0.26 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
158 siliques WT hypoxia 0.82 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
159 rli 0.59 >More info 0.24 >More info WT whole plant Original data GEO bulk
160 IRP1-OE-Ctrl--shoot 0.73 >More info 0.10 >More info COL-0-Ctrl--shoot shoot Original data
161 Pseudomonas 0.62 >More info 0.20 >More info Control pseudomonas treated whole seedling Original data GEO bulk
162 Tsu -Fe 24h Roots 0.52 >More info 0.30 >More info Tsu +Fe 24h Roots Original data GEO bulk
163 ABA DFPM 0.52 >More info 0.30 >More info control Original data GEO bulk
164 Tsu-1 -Fe 24h 0.52 >More info 0.30 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
165 gun1-9 control 0.63 >More info 0.19 >More info Col-0 control Original data GEO bulk
166 shoot hypoxia pKAT1 0.53 >More info 0.29 >More info shoot hypoxia total Original data GEO bulk
167 low CO2 + light 0.27 >More info 0.55 >More info normal CO2 + light Original data GEO bulk
168 FLIGHT TAGESB plate6 SHOOTS 0.31 >More info 0.51 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
169 root hypoxia pWOL 0.60 >More info 0.22 >More info root hypoxia total hypoxia root Original data GEO bulk
170 myb50 xylem 0.71 >More info 0.11 >More info wt xylem xylem Original data GEO bulk
171 root cells epidermis 140mM NaCl 20 hours 0.61 >More info 0.21 >More info root cells epidermis standard 1 hour root cells epidermis Original data
172 albino Ds13-2198-1 -0.56 >More info -0.25 >More info control Original data GEO bulk
173 WT 1wk -P 0.53 >More info 0.28 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
174 etr1 1% sucrose 12-day-old 0.56 >More info 0.25 >More info Col-0 1% sucrose 12-day-old Original data GEO bulk
175 root cells epidermis 140mM NaCl 48 hours 0.56 >More info 0.25 >More info root cells epidermis standard 1 hour root cells epidermis Original data
176 C58 35dpi 0.79 >More info 0.02 >More info Reference 35dpi wounded inflorescence stalk segments Original data GEO bulk
177 mbd6 mutant thaliana 10-day-old seedling 0.63 >More info 0.17 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
178 shoot hypoxia pCER5 0.55 >More info 0.25 >More info shoot hypoxia total Original data GEO bulk
179 max4 hypocotyl 0.51 >More info 0.29 >More info wt hypocotyl hypocotyl Original data GEO bulk
180 Laer pretreat GA+JA Flg22 0h 0.57 >More info 0.23 >More info Laer pretreat water control leaf discs Original data GEO bulk
181 AgNO3 3 h 0.22 >More info 0.58 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
182 elevated CO2 high Mg root -0.64 >More info -0.15 >More info atmospheric CO2 high Mg root Root Original data
183 Mutant ap1-15(shoot apex) 0.62 >More info 0.17 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
184 Seedling-HeatStressed POLYSOMESmRNA 0.27 >More info 0.52 >More info Seedling-control POLYSOMESmRNA seedling Original data
185 hy5 low light -0.59 >More info -0.19 >More info Col-O low light Original data GEO bulk
186 Mutant hy5 -0.59 >More info -0.19 >More info Col-0 Original data GEO bulk
187 det2 light-dark -0.58 >More info -0.20 >More info det2 light light-dark Original data GEO bulk
188 Tsu-1 -Fe 48h 0.68 >More info 0.10 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
189 ani1 T16 -0.62 >More info -0.16 >More info WT T16 root tissue Original data GEO bulk
190 R. amphibia submerged 0.51 >More info 0.27 >More info R. amphibia air Original data GEO bulk
191 IPT8 induced 24h 0.50 >More info 0.28 >More info Control 24h 24 hours primary root tip (5 mm) Original data GEO bulk
192 GV3101 6dpi 0.60 >More info 0.18 >More info Reference 6dpi wounded inflorescence stalk segments Original data GEO bulk
193 Tsu -Fe 48h Roots 0.68 >More info 0.10 >More info Tsu +Fe 24h Roots Original data GEO bulk
194 ubc13A-es -0.59 >More info -0.19 >More info Col-es root Original data GEO bulk
195 Shoot apex inflorescence (after bolting) 0.13 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
196 Mutant sav3-2 (SH) 0.18 >More info 0.60 >More info Col-0 (SH) Original data GEO bulk
197 WT+H2O2 0.23 >More info 0.55 >More info WT H2O2 Original data GEO bulk
198 sav3-2 shade 0.18 >More info 0.60 >More info Col-0 shade seedlings Original data GEO bulk
199 root cells stele 140mM NaCl 20 hours 0.57 >More info 0.20 >More info root cells stele standard 1 hour root cells stele Original data
200 PRR5-VP 12h light on -0.61 >More info -0.16 >More info WT 12h light on whole plant Original data GEO bulk
201 Hypoxic prt6 0.51 >More info 0.26 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
202 JMJ24 knockout 0.62 >More info 0.15 >More info WT Original data GEO bulk
203 WT NAA 2h -0.10 >More info -0.67 >More info WT 0h Leaf tissue Original data GEO bulk
204 hira-protoplast -0.62 >More info -0.14 >More info WT-protoplast protoplast Original data
205 Col-O low light 0.55 >More info 0.21 >More info Col-O bule light Original data GEO bulk
206 root hypoxia pSCR 0.54 >More info 0.22 >More info root hypoxia total hypoxia root Original data GEO bulk
207 ARR22-ox (t-zeatin 3 h) 0.58 >More info 0.18 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
208 IAA7mII over-expressor IAA Treated 0.07 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
209 WT AntimycinA 3h 0.21 >More info 0.55 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
210 root hypoxia pPEP 0.50 >More info 0.25 >More info root hypoxia total hypoxia root Original data GEO bulk
211 Root submergence 24h 0.54 >More info 0.21 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
212 JMJ24-IBM1 double knockout -0.51 >More info -0.24 >More info WT Original data GEO bulk
213 DC3000 24h 0.16 >More info 0.59 >More info Mock 24h DC3000 Original data GEO bulk
214 Shoot -Cs 0.23 >More info 0.52 >More info Control-shoot Original data GEO bulk
215 3.5h KNO3 Whole root -0.23 >More info -0.52 >More info 3.5h KCl control Whole root Whole root Original data GEO bulk
216 Seedling-HeatStressed TOTALmRNA 0.24 >More info 0.51 >More info Seedling-control TOTALmRNA seedling Original data
217 mtf1-1 0.62 >More info 0.12 >More info Col0 root Original data
218 Var2-1 roots 2hr KCl control -0.58 >More info -0.16 >More info Col0 roots 2hr KCl control root Original data GEO bulk
219 6m.KCl -0.62 >More info -0.12 >More info To. KCl 14 day old Roots Original data GEO bulk
220 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.57 >More info -0.17 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
221 C58 3hpi 0.55 >More info 0.19 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
222 Light 0.5h steady-state 0.18 >More info 0.56 >More info Dark steady-state white light seedlings (aerial parts) Original data GEO bulk
223 Col-0 SA 0.57 >More info 0.16 >More info Col-0 water complete seedling Original data
224 Brz220 12 h -0.52 >More info -0.21 >More info Mock 12 h Original data Effect of brassinosteroid inhibitors on seedlings
225 Dark 0.64 >More info 0.09 >More info Control Original data GEO bulk
226 Nuclear GSH1 -0.67 >More info -0.06 >More info Cytoplasmic GSH1 Control Original data GEO bulk
227 ckh2 CK25 0.64 >More info 0.08 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
228 root cells stele 140mM NaCl 32 hours 0.50 >More info 0.22 >More info root cells stele standard 1 hour root cells stele Original data
229 Col-0 V. longisporum-inoculated 48 hpi 0.54 >More info 0.18 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
230 TAMM27 roots 2hr KCl control -0.62 >More info -0.10 >More info Col0 roots 2hr KCl control root Original data GEO bulk
231 Col-0 flu HL 0h -0.51 >More info -0.21 >More info Col-0 WT HL 0h without high light treatment whole seedlings without root Original data
232 Fei-0-3h IAA -0.54 >More info -0.18 >More info Fei-0-0h IAA whole plant Original data GEO bulk
233 Osmotic Stress 24 h (root) 0.51 >More info 0.21 >More info Stress mock 24 h (root) Original data Stress treatments
234 AtMYB30-ox T0 -0.17 >More info -0.54 >More info WT T0 Original data GEO bulk
235 Root submergence 7h 0.53 >More info 0.18 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
236 FarRed Light 45min -0.14 >More info -0.57 >More info White Light 45min Original data Light treatments
237 Col-0 37C 0.18 >More info 0.53 >More info Col-0 22C Original data GEO bulk
238 cat2-2; 8h switch to ambient CO2 concentrations; 0.09 >More info 0.62 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
239 SAM SE 35S:AGL15 0.54 >More info 0.16 >More info SAM SE Col Original data GEO bulk
240 Truncated AC2 T1 -0.62 >More info -0.08 >More info AC2 and AC2del control T1 one day post infusion with Agrobacterium containing a truncated version of CaLCuV AC2 Arabidopsis rosette leaves Original data
241 9m.KCl 0.51 >More info 0.19 >More info To. KCl 14 day old Roots Original data GEO bulk
242 Ws HS 0.18 >More info 0.52 >More info Ws control heat shocked seedling Original data GEO bulk
243 WT (Ler) CK200 0.67 >More info 0.02 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
244 mp-B4149 mutant IAA 0.53 >More info 0.16 >More info GR-bdl IAA Original data GEO bulk
245 Col ozone 3h 0.17 >More info 0.52 >More info Col clean-air 3h ozone Original data GEO bulk
246 spx1 spx2 complete -0.61 >More info -0.08 >More info WT complete seedlings Original data
247 GO5; 0h switch to ambient CO2 concentrations; -0.57 >More info -0.12 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
248 WT cold 24h -0.51 >More info -0.17 >More info WT cold 0h cold at 4°C seedlings Original data GEO bulk
249 root cells stele 140mM NaCl 1 hour 0.55 >More info 0.13 >More info root cells stele standard 1 hour root cells stele Original data
250 Kas2 roots 2hr KCl control -0.53 >More info -0.15 >More info Col0 roots 2hr KCl control root Original data GEO bulk
251 elevated CO2 normal Mg root -0.59 >More info -0.09 >More info atmospheric CO2 normal Mg root Root Original data
252 GA3 1 h (ga1) 0.55 >More info 0.12 >More info Mock 1 h (ga1) Original data Basic hormone treatment of seedlings
253 root cells epidermis 140mM NaCl 8 hours 0.53 >More info 0.13 >More info root cells epidermis standard 1 hour root cells epidermis Original data
254 Drought Stress 24 h (root) -0.50 >More info -0.16 >More info Stress mock 24 h (root) Original data Stress treatments
255 mutant-line409 0.66 >More info -0.00 >More info WT-control whole plant Original data GEO bulk
256 ddm1 mutant seedlings -0.61 >More info -0.05 >More info control seedlings 10-day old whole seedling Original data GEO bulk
257 Methyl Jasmonate 0.5 h 0.04 >More info 0.62 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
258 ckh2 CK0 0.57 >More info 0.09 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
259 ein2 mutant roots mock -0.57 >More info -0.09 >More info roots mock Original data GEO bulk
260 elevated CO2 low Mg root -0.51 >More info -0.14 >More info atmospheric CO2 low Mg root Root Original data
261 ago4-1 0.62 >More info 0.03 >More info WT La-er whole plants Original data GEO bulk
262 ft-1 10C long-day -0.54 >More info -0.11 >More info Ler 10C long-day seeds Original data GEO bulk
263 Cambium 5 days NAA 0.60 >More info 0.05 >More info Stem tissue T0 Interfascicular cambium induced after 5 days NAA in vitro treatment laser capture microdissection Original data GEO bulk
264 P35S:rGRF3 0.52 >More info 0.13 >More info WS Original data GEO bulk
265 B.cinerea 18 h infection 0.14 >More info 0.51 >More info Mock 18 h Original data Botrytis cinerea infection
266 Botrytis cinerea 18h 0.14 >More info 0.51 >More info control 18h Original data GEO bulk
267 afb3-1 2h KCl -0.67 >More info 0.03 >More info Ws 2h KCl 2 hours of 5 mM KCl Arabidopsis root Original data GEO bulk
268 seedling mSPL13 0.57 >More info 0.07 >More info seedling Col-0 Original data GEO bulk
269 3x(m) -0.05 >More info 0.69 >More info 2x two week old seedlings Original data
270 bak1-3 untreated 0.63 >More info 0.00 >More info WT untreated untreated Original data GEO bulk
271 Col-0 35S:MBS1 HL 3h -0.53 >More info -0.10 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
272 Leaf wounded 0.11 >More info 0.52 >More info Leaf control vegetative leaf Original data GEO bulk
273 iron minus 6 h -0.73 >More info 0.11 >More info iron +6 h root Original data GEO bulk
274 msg2-BR 0.54 >More info 0.07 >More info BR BR dark-grown seedlings Original data GEO bulk
275 Callus 0.60 >More info 0.01 >More info Control for tissue data callus Original data GEO bulk
276 cop1 Seedling BL+ABA 0.52 >More info 0.09 >More info WT Seedling BL+ABA Original data GEO bulk
277 Protoplast Induced -0.01 >More info 0.62 >More info Uninduced Original data GEO bulk
278 ckh1 CK0 0.53 >More info 0.07 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
279 root longitudinal zone-1 -Fe 0.08 >More info 0.52 >More info root longitudinal zone-1 standard Original data GEO bulk
280 Laer pretreat GA Flg22 1h -0.11 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
281 myb50 cork 0.61 >More info -0.02 >More info wt cork cork Original data GEO bulk
282 CCA1-ox 6am non-polysomal 0.07 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
283 Light 0.5h polysome-bound 0.08 >More info 0.50 >More info Dark polysome-bound white light seedlings (aerial parts) Original data GEO bulk
284 DMTU 0.51 >More info 0.06 >More info control Original data GEO bulk
285 Cs shoot -0.54 >More info -0.03 >More info control shoot Original data GEO bulk
286 hni9 low nitrogen -0.53 >More info -0.04 >More info WT low nitrogen roots Original data GEO bulk
287 Shoot submergence 7h 0.56 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
288 KCl germinant -0.50 >More info -0.06 >More info Millipore Water germinant KCl seedling Original data
289 shoots bhlh100/101 100uM Fe 0.52 >More info 0.04 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
290 pnp1-1 1wk -P 0.53 >More info 0.02 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
291 FarRed Light 4 h 0.03 >More info 0.52 >More info White Light 4 h Original data Light treatments
292 amiRAP aerobic -0.01 >More info -0.54 >More info WT aerobic aerobic Original data GEO bulk
293 WT +Pep2 10h -0.52 >More info -0.02 >More info WT untreated Pep2 Original data GEO bulk
294 plant (tga2-5-6) 4h phytoprostane A1 -0.01 >More info 0.54 >More info plant (tga2-5-6) 4h control Original data GEO bulk
295 4C 2h(SOIL) -0.02 >More info 0.55 >More info 4C 0h(SOIL) Original data GEO bulk
296 Te 3d 0.54 >More info -0.02 >More info Te CA Leaves Original data
297 2hr transitory KNO3 PrR cell 0.02 >More info 0.50 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
298 Imbibed 3 h (seed) 0.53 >More info -0.02 >More info Dry seed Original data Time course of early seed germination
299 dsr1 -0.61 >More info 0.10 >More info WT mock Whole seedling Original data GEO bulk
300 HARAP aerobic 0.54 >More info -0.04 >More info WT aerobic aerobic Original data GEO bulk
301 roots IAA -0.51 >More info 0.01 >More info roots mock Original data GEO bulk
302 Mutant ga1-5 0.59 >More info -0.09 >More info Ler-1 Original data Comparison of plant hormone related mutant
303 root hypoxia pSHR 0.53 >More info -0.04 >More info root hypoxia total hypoxia root Original data GEO bulk
304 WT hypoxia 0.51 >More info -0.02 >More info WT normoxia whole rosette Original data
305 9m.KNO3 -0.60 >More info 0.11 >More info To. KNO3 14 day old Roots Original data GEO bulk
306 pepr1-1 Pepr2-3 +Pep2 2h 0.01 >More info -0.50 >More info WT +Pep2 2h Pep2 Original data GEO bulk
307 NJ15 -0.02 >More info 0.50 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
308 WT-Dry -0.04 >More info 0.51 >More info WT-CK dehydration treatment 1h Original data
309 phr1 Shoot-Pi -0.58 >More info 0.11 >More info WT Root-Pi shoots Original data GEO bulk
310 Mutant iaa5_6_19(IAA) 0.52 >More info -0.06 >More info Col (IAA) Original data GEO bulk
311 iron minus 24h -0.65 >More info 0.19 >More info iron +24h root Original data GEO bulk
312 sfr6 drought 0.15 >More info -0.61 >More info WT drought All aerial tissue Original data GEO bulk
313 ACN1-2 Sucrose -0.66 >More info 0.22 >More info Col-7 Sucrose Original data GEO bulk
314 mutant-line348 0.56 >More info -0.12 >More info WT-control whole plant Original data GEO bulk
315 hog1-7 0.59 >More info -0.17 >More info wt whole seedling Original data GEO bulk
316 mutant-line774 0.59 >More info -0.17 >More info WT-control whole plant Original data GEO bulk
317 WT drought -0.11 >More info 0.52 >More info WT control All aerial tissue Original data GEO bulk
318 myb3 myb3r4d -0.61 >More info 0.21 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
319 IRP1-OE-Fe--root -0.52 >More info 0.13 >More info COL-0-Fe--root root Original data
320 Heat Recovery 24 h (root) -0.63 >More info 0.24 >More info Stress mock 24 h (root) Original data Stress treatments
321 Paclobutrazol 3 h 0.56 >More info -0.18 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
322 3x(p) -0.14 >More info 0.52 >More info 2x two week old seedlings Original data
323 Prohexadione 3 h -0.52 >More info 0.15 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
324 WT 3H Cold -0.24 >More info 0.61 >More info WT control Original data GEO bulk
325 WT NAA 1h 0.21 >More info -0.57 >More info WT 0h Leaf tissue Original data GEO bulk
326 aerial organ callus inducing medium 96 h 0.53 >More info -0.18 >More info aerial organ callus inducing medium 0 h 96 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
327 Brassinolide 0.5 h (det2) 0.52 >More info -0.17 >More info Mock 0.5 h (det2) Original data Basic hormone treatment of seedlings
328 phr1 Root-Pi -0.51 >More info 0.18 >More info WT Root+Pi roots Original data GEO bulk
329 INA -0.50 >More info 0.17 >More info CK INA seedling Original data
330 4d red light grown hmr-22 seedlings 0.52 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
331 PNO8 12 h -0.51 >More info 0.21 >More info Mock 12 h Original data Effect of other inhibitors on seedlings
332 Full C2 T3 0.38 >More info -0.58 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data