4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on WT seedlings MV
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List of experiments correlated with "WT seedlings MV"  Help Download transcriptome of top 30
Score Experiment Correlation from
WT seedlings MV		 Correlation to
WT seedlings MV		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 WT seedlings MV 1.00 >More info 1.00 >More info WT seedlings control Seedlings Original data GEO bulk
2 rosette Dark Wounded 0.76 >More info 0.82 >More info rosette Dark Control Original data GEO bulk
3 WT+H2O2 0.74 >More info 0.79 >More info WT H2O2 Original data GEO bulk
4 GRX-overexpression seedlings MV -0.72 >More info -0.79 >More info WT seedlings MV Seedlings Original data GEO bulk
5 IAA/inhibitor A Treated 0.70 >More info 0.77 >More info IAA Treated Original data GEO bulk
6 inhibitor A Treated 0.70 >More info 0.77 >More info Negative Control Original data GEO bulk
7 inhibitor B Treated 0.72 >More info 0.75 >More info Negative Control Original data GEO bulk
8 WT flg22 2h 0.69 >More info 0.78 >More info WT 0h Leaf tissue Original data GEO bulk
9 Col-Luc WT 3h antimycin A 0.72 >More info 0.73 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
10 rosette Light Wounded 0.69 >More info 0.75 >More info rosette Light Control Original data GEO bulk
11 flu over-tAPX 0.70 >More info 0.74 >More info WT Col Original data GEO bulk
12 flu 0.69 >More info 0.74 >More info WT Col Original data GEO bulk
13 anac017-2 AntimycinA 3h -0.72 >More info -0.70 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
14 Anoxia 0.68 >More info 0.74 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
15 gai Control 0.78 >More info 0.63 >More info Laer Control leaf discs Original data GEO bulk
16 Hydrogen Peroxide 500 uM 0.66 >More info 0.75 >More info Control RB and PER Hydrogen Peroxide Original data
17 Heat and anoxia 0.69 >More info 0.72 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
18 Col-0 low oxygen 0.73 >More info 0.66 >More info Col-0 control low oxygen root Original data GEO bulk
19 TNT-seedlings 0.62 >More info 0.77 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
20 WT NAA/flg 1h 0.66 >More info 0.72 >More info WT 0h Leaf tissue Original data GEO bulk
21 WT flg22 1h 0.65 >More info 0.73 >More info WT 0h Leaf tissue Original data GEO bulk
22 9 hr Hypoxia 1 hr recovery IP RNA 0.73 >More info 0.65 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
23 Col-0 2HS 0.66 >More info 0.71 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
24 9 hr Hypoxia 1 hr recovery Total RNA 0.73 >More info 0.64 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
25 5-Triiodobenzoic acid3 h 0.65 >More info 0.72 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
26 Cycloheximide 3 h 0.66 >More info 0.70 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
27 WT 30μM arsenate 8 hours. 0.70 >More info 0.66 >More info WT control (not supplemented). Original data
28 IAA/inhibitor B Treated 0.60 >More info 0.75 >More info IAA Treated Original data GEO bulk
29 Col-0 HS 0.57 >More info 0.76 >More info Col-0 control heat shocked seedling Original data GEO bulk
30 WT (Col-0) heat shock 0.57 >More info 0.76 >More info WT (Col-0) whole seedling Original data GEO bulk
31 oligomycin 4 h 0.66 >More info 0.66 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
32 plant (tga2-5-6) 4h phytoprostane A1 0.61 >More info 0.71 >More info plant (tga2-5-6) 4h control Original data GEO bulk
33 Col-0 37C 0.61 >More info 0.70 >More info Col-0 22C Original data GEO bulk
34 miR393 flg22 1h 0.58 >More info 0.73 >More info WT 0h Leaf tissue Original data GEO bulk
35 root protoplasts 40 mM NaCl 0.65 >More info 0.65 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
36 DFPM 0.64 >More info 0.66 >More info control Original data GEO bulk
37 WT Shoot Hypoxia 0.60 >More info 0.70 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
38 root Dosed gold 0.66 >More info 0.63 >More info root No gold .125 mM gold 24 h roots Original data
39 Fenclorim 4hr 0.66 >More info 0.63 >More info Acetone 4hr root Original data GEO bulk
40 col-5 DC3000-avrRpm 4h 0.65 >More info 0.64 >More info col-5 MgCl2 4h Whole leaf Original data GEO bulk
41 0.125 mM gold 24 h 0.66 >More info 0.63 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
42 WT AntimycinA 3h 0.67 >More info 0.62 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
43 9 hr Hypoxia IP RNA 0.72 >More info 0.56 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
44 WT-Dry 0.55 >More info 0.73 >More info WT-CK dehydration treatment 1h Original data
45 AgNO3 3 h 0.61 >More info 0.67 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
46 Selenate (root) 0.60 >More info 0.67 >More info Ws (root) Original data GEO bulk
47 Root Selenate 0.60 >More info 0.67 >More info Root control 40 micromolar selenate Root Original data GEO bulk
48 NJ15 0.59 >More info 0.68 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
49 gun1gun5 far-red pretreated -0.62 >More info -0.65 >More info WT far-red pretreated Original data GEO bulk
50 Phytoprostane A1 4 h 0.61 >More info 0.65 >More info Col-0 Original data GEO bulk
51 Light 0.54 >More info 0.72 >More info Control Original data GEO bulk
52 2 hr Hypoxia Total RNA 0.66 >More info 0.60 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
53 AFB1 flg22 1h 0.55 >More info 0.71 >More info WT 0h Leaf tissue Original data GEO bulk
54 CMP 4hr 0.69 >More info 0.57 >More info Acetone 4hr root Original data GEO bulk
55 Seedling KUA1-IOX est 0.64 >More info 0.61 >More info Seedling KUA1-IOX mock Original data
56 ex2 flu dark 8hours/30 minute light 0.52 >More info 0.73 >More info col dark 8hours/30 minute light Original data GEO bulk
57 (Col-0)+200 uM As 0.59 >More info 0.66 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
58 P.p 6hai 0.60 >More info 0.64 >More info At-Control roots Original data GEO bulk
59 Ws HS 0.58 >More info 0.66 >More info Ws control heat shocked seedling Original data GEO bulk
60 9 hr Hypoxia Total RNA 0.69 >More info 0.55 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
61 Col-0 flu HL 3h 0.65 >More info 0.58 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
62 1h +Pi -0.61 >More info -0.62 >More info 1h -Pi root Original data GEO bulk
63 Laer Flg22 1h 0.58 >More info 0.64 >More info Laer Control leaf discs Original data GEO bulk
64 Rose Bengal 0.5 uM 0.51 >More info 0.71 >More info Control RB and PER Rose Bengal Original data
65 chito-tetramer 0.53 >More info 0.69 >More info Col Mock Original data GEO bulk
66 (Col-0)+100 uM As 0.58 >More info 0.64 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
67 bak1-3 +Pep2 10h 0.60 >More info 0.61 >More info WT +Pep2 10h Pep2 Original data GEO bulk
68 anac017-2 water 3h 0.56 >More info 0.65 >More info WT water 3h 3h_water Original data GEO bulk
69 P.p 30hai 0.55 >More info 0.66 >More info At-Control roots Original data GEO bulk
70 Laer Flg22+GA 1h 0.52 >More info 0.68 >More info Laer Control leaf discs Original data GEO bulk
71 root hypoxia total 0.69 >More info 0.51 >More info root control total Original data GEO bulk
72 atgsnor1-3-avrB-6h 0.61 >More info 0.59 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
73 Col-0 wt Hypoxic 0.52 >More info 0.67 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
74 Heat 0.55 >More info 0.64 >More info Control 90 minutes at 38°C. Original data GEO bulk
75 ABA DFPM 0.59 >More info 0.60 >More info control Original data GEO bulk
76 Protoplast Induced 0.47 >More info 0.72 >More info Uninduced Original data GEO bulk
77 chito-octamer 0.47 >More info 0.72 >More info Col Mock Original data GEO bulk
78 35S::PI ap3-3 35S::AP-GR +DEX 0.55 >More info 0.63 >More info 0hr DEX Original data GEO bulk
79 dicamba 0.65 >More info 0.53 >More info WT mock whole seedling Original data GEO bulk
80 roottip hypoxia total 0.59 >More info 0.59 >More info roottip control total Original data GEO bulk
81 flu dark 8hours/30 minute light 0.43 >More info 0.75 >More info col dark 8hours/30 minute light Original data GEO bulk
82 WT+chitooctaose 0.44 >More info 0.74 >More info WT+water chitooctaose seedlings Original data GEO bulk
83 Col-0 under 4 days salt 0.63 >More info 0.54 >More info Col-0 under control 4 days salt treatment rosette Original data
84 WT H2O2 3h 0.64 >More info 0.53 >More info WT water 3h 3h_H2O2 Original data GEO bulk
85 safener treated 0.66 >More info 0.51 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
86 CMP 24hr 0.64 >More info 0.53 >More info Acetone 24hr root Original data GEO bulk
87 wnk8-2 untreated -0.54 >More info -0.63 >More info Col-0 untreated seedlings Original data GEO bulk
88 ein3 eil1 0.64 >More info 0.52 >More info Col-0 mock Whole seedling Original data GEO bulk
89 root stele 40 mM NaCls 0.67 >More info 0.49 >More info root stele Original data GEO bulk
90 IMI 4mM 0.63 >More info 0.53 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
91 shoots bhlh100/101 0uM Fe 0.71 >More info 0.45 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
92 Laer pretreat GA+JA Flg22 0h 0.71 >More info 0.44 >More info Laer pretreat water control leaf discs Original data GEO bulk
93 pXVE:HA-EDM2-a untreated -0.50 >More info -0.65 >More info Col-0 untreated seedlings Original data GEO bulk
94 35S:RPS4 eds1-2 8h -0.54 >More info -0.61 >More info 35S:RPS4 8h leaves Original data
95 seedlings protease IV 0.48 >More info 0.67 >More info seedlings nontreated control whole seedling Original data
96 SA 0.66 >More info 0.48 >More info WT mock Whole seedling Original data GEO bulk
97 rao2 H2O2 3h -0.67 >More info -0.47 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
98 csn5 (csn5a-2 csn5b) light 0.64 >More info 0.50 >More info WT light Original data GEO bulk
99 Methyl Jasmonate 1 h 0.52 >More info 0.62 >More info Mock 1 h Original data Basic hormone treatment of seedlings
100 ataf1-1 mutant Col-0 Bgh inoculated 0.52 >More info 0.62 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
101 Salt Stress 24 h (root) 0.61 >More info 0.53 >More info Stress mock 24 h (root) Original data Stress treatments
102 wnk8-1 untreated -0.48 >More info -0.66 >More info Col-0 untreated seedlings Original data GEO bulk
103 Laer pretreat JA Flg22 1h 0.57 >More info 0.57 >More info Laer pretreat water control leaf discs Original data GEO bulk
104 rcf1-1 cold 24h 0.57 >More info 0.57 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
105 oligomycin 1 h 0.43 >More info 0.71 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
106 P.p 2.5hai 0.48 >More info 0.65 >More info At-Control roots Original data GEO bulk
107 Heat shock optimum 0.48 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
108 WT Root Hypoxia 0.48 >More info 0.65 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
109 2 hr Hypoxia IP RNA 0.68 >More info 0.44 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
110 Dex-rga(delta17) 2h GA4+DEX -0.52 >More info -0.60 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
111 cell culture 4 h phytoprostane A1 0.54 >More info 0.58 >More info cell culture 4 h control Original data GEO bulk
112 R. solani AG8 0.56 >More info 0.55 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
113 whole roots 140 mM NaCl 30 minutes 0.53 >More info 0.58 >More info whole roots standard Original data GEO bulk
114 Seedling-HeatStressed POLYSOMESmRNA 0.50 >More info 0.61 >More info Seedling-control POLYSOMESmRNA seedling Original data
115 Laer treat paclobutrazol (PAC) 0.60 >More info 0.51 >More info Laer Control leaf discs Original data GEO bulk
116 Col0-PsmES4326-24hpi 0.50 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
117 FHY3p dark+DEX -0.62 >More info -0.49 >More info FHY3p dark+mock Original data GEO bulk
118 Seedling-HeatStressed TOTALmRNA 0.51 >More info 0.60 >More info Seedling-control TOTALmRNA seedling Original data
119 whole roots 140 mM NaCl 1 hour 0.56 >More info 0.54 >More info whole roots standard Original data GEO bulk
120 ein2-1 9 hpi A. brassicicola 0.50 >More info 0.60 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
121 plant (Col-0) 4h phytoprostane A1 0.51 >More info 0.59 >More info plant (tga2-5-6) 4h control Original data GEO bulk
122 WT Col-0 Bgh inoculated 0.49 >More info 0.61 >More info WT Col-0 Un-inoculated Original data GEO bulk
123 Laer pretreat GA Flg22 1h 0.39 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
124 pepr1-1 Pepr2-3 +Pep2 2h -0.48 >More info -0.62 >More info WT +Pep2 2h Pep2 Original data GEO bulk
125 Pst-DC3000(avrRpm1)-4hpi 0.45 >More info 0.65 >More info Pst-DC3000-4hpi Original data GEO bulk
126 root protophloem 40 mM NaCl 0.64 >More info 0.45 >More info root protophloem Original data GEO bulk
127 LTN008-2 aza-dc 0.56 >More info 0.53 >More info LTN012-2 Mock Original data
128 Cocultivation 8 hrs root 0.45 >More info 0.64 >More info Mock cocultivation 8 hrs root Root Original data
129 AvrRpt2 Col-0 6hpi 0.58 >More info 0.51 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
130 GST NPP1 4 h (leaf) 0.59 >More info 0.50 >More info Mock 4 h (leaf) Original data Elicitor treatments
131 wnk8-3 untreated -0.52 >More info -0.57 >More info Col-0 untreated seedlings Original data GEO bulk
132 Col-0 9 hpi A. brassicicola 0.51 >More info 0.58 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
133 WT 3h -P 0.58 >More info 0.51 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
134 leaf13 0.51 >More info 0.58 >More info unwounded leaves none Original data GEO bulk
135 P.p 10.5hai 0.48 >More info 0.61 >More info At-Control roots Original data GEO bulk
136 AFB1 flg22 2h 0.54 >More info 0.54 >More info WT 0h Leaf tissue Original data GEO bulk
137 Laer Flg22+GA 2h 0.57 >More info 0.51 >More info Laer Control leaf discs Original data GEO bulk
138 MPK6 ox Shoot Hypoxia 0.55 >More info 0.53 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
139 Col-0 DCA 48h 0.54 >More info 0.54 >More info Col-0 MOCK 48h Original data GEO bulk
140 hira-root -0.53 >More info -0.54 >More info WT-root root Original data
141 (Ws-2)+100 uM As 0.52 >More info 0.55 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
142 root cells columella root cap -Fe 0.61 >More info 0.46 >More info whole roots standard Original data GEO bulk
143 Sulfometuron EC50 0.51 >More info 0.56 >More info Carrier Original data GEO bulk
144 WT 3H Cold 0.39 >More info 0.68 >More info WT control Original data GEO bulk
145 35S:RPS4 eds1-2 2h -0.39 >More info -0.68 >More info 35S:RPS4 2h leaves Original data
146 6-trichlorophenoxyacetic acid 3 h 0.50 >More info 0.57 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
147 cat2-short-day 2d 0.57 >More info 0.50 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
148 Dex-rga(delta17) 4h GA4+DEX -0.48 >More info -0.59 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
149 coi1-2 0.52 >More info 0.54 >More info Col-0 mock Whole seedling Original data GEO bulk
150 WT 2-4h Xanthomonas 0.57 >More info 0.49 >More info WT T0 Original data GEO bulk
151 Laer pretreat JA Flg22 0h 0.55 >More info 0.51 >More info Laer pretreat water control leaf discs Original data GEO bulk
152 QK HS 0.47 >More info 0.59 >More info QK control heat shocked seedling Original data GEO bulk
153 sid2-2 9 hpi A. brassicicola 0.55 >More info 0.50 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
154 abi1 hypocotyl 0.39 >More info 0.66 >More info Ler hypocotyl hypocotyl Original data GEO bulk
155 aba1 hypocotyl 0.45 >More info 0.60 >More info Ler hypocotyl hypocotyl Original data GEO bulk
156 sicy-192 gun1-101 cotyledons 0.49 >More info 0.56 >More info WT cotyledons cotyledons Original data
157 npr1-1 SA -0.60 >More info -0.44 >More info Col-0 SA complete seedling Original data
158 PNO8 3 h 0.58 >More info 0.46 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
159 root cells stele -Fe 0.58 >More info 0.46 >More info whole roots standard Original data GEO bulk
160 root cells epidermis and lateral root cap -Fe 0.57 >More info 0.47 >More info whole roots standard Original data GEO bulk
161 root cells endodermis and quiescent center -Fe 0.53 >More info 0.50 >More info whole roots standard Original data GEO bulk
162 B.cinerea 18 h infection 0.60 >More info 0.43 >More info Mock 18 h Original data Botrytis cinerea infection
163 Botrytis cinerea 18h 0.60 >More info 0.43 >More info control 18h Original data GEO bulk
164 Shoot -Cs 0.33 >More info 0.70 >More info Control-shoot Original data GEO bulk
165 ein3 eil1 JA 0.54 >More info 0.48 >More info JA Whole seedling Original data GEO bulk
166 Botrytis cinerea 48h 0.60 >More info 0.42 >More info control 48h Original data GEO bulk
167 Col-0 low oxygen 0.55 >More info 0.47 >More info Col-0 Original data GEO bulk
168 shoot hypoxia total 0.42 >More info 0.60 >More info shoot control total Original data GEO bulk
169 col-5 DC3000 12h 0.43 >More info 0.59 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
170 WT seedlings IAA 0.39 >More info 0.63 >More info WT seedlings control Seedlings Original data GEO bulk
171 aox1a:rpoTmp untreated 0.49 >More info 0.53 >More info WT(Col0) untreated (control aox1a:rpoTmp) leaf Original data
172 Fenclorim 24hr 0.56 >More info 0.45 >More info Acetone 24hr root Original data GEO bulk
173 Laer pretreat GA+JA Flg22 1h 0.62 >More info 0.39 >More info Laer pretreat water control leaf discs Original data GEO bulk
174 clf-28 swn-7 0.52 >More info 0.49 >More info Col whole plant Original data GEO bulk
175 Red/FR Light45min 0.16 >More info 0.85 >More info FarRed Light 45min Original data Light treatments
176 sim smr1 -0.44 >More info -0.57 >More info WT seedling Original data GEO bulk
177 GO5; 8h switch to ambient CO2 concentrations; 0.34 >More info 0.67 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
178 CeO2 germinant -0.46 >More info -0.55 >More info Millipore Water germinant CeO2 seedling Original data
179 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.57 >More info 0.43 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
180 plant (Col-0) 4h OPDA 0.56 >More info 0.44 >More info plant (Col-0) 4h control Original data GEO bulk
181 Col-0 ozone 0.57 >More info 0.43 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
182 hrpA fliC 7h 0.53 >More info 0.47 >More info Mock 7h hrpA fliC Original data GEO bulk
183 Col light-dark EtOH 0.59 >More info 0.41 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
184 OPDA 4 h 0.56 >More info 0.44 >More info Col-0 Original data GEO bulk
185 Wounding Stress3 h (shoot) 0.41 >More info 0.59 >More info Stress mock 3 h (shoot) Original data Stress treatments
186 JA 0.46 >More info 0.54 >More info Col-0 mock Whole seedling Original data GEO bulk
187 Cor 10h 0.48 >More info 0.52 >More info Mock 10h Cor Original data GEO bulk
188 WT Seedling BL+ABA 0.48 >More info 0.52 >More info WT Seedling BL Original data GEO bulk
189 Leafminer damaged seedlings 0.44 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
190 GRX-overexpression seedlings control 0.47 >More info 0.53 >More info WT seedlings control Seedlings Original data GEO bulk
191 seedling 1.5h after Gamma WT 0.44 >More info 0.56 >More info seedling day 1 unirradiated WT 1.5h Original data
192 Phaseolicola 2 h (leaf) 0.47 >More info 0.52 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
193 1 h Light Total RNA -0.48 >More info -0.51 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
194 cat2-2; 8h switch to ambient CO2 concentrations; 0.39 >More info 0.60 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
195 seedling 24h after HZE atm-1 0.32 >More info 0.67 >More info seedling day 2 unirradiated atm-1 24h Original data
196 csn3-1 light 0.51 >More info 0.47 >More info WT light Original data GEO bulk
197 SCR-GR Time 12H Dex 0.59 >More info 0.39 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
198 downy mildew cotyledons late stage 0.60 >More info 0.38 >More info mock inoculated Cotyledons Original data GEO bulk
199 Methyl Jasmonate 0.5 h 0.41 >More info 0.57 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
200 GR:KAN1 DEX Shade 0.48 >More info 0.50 >More info GR:KAN1 Mock Shade seedlings Original data
201 Tsu-1 -Fe 24h 0.39 >More info 0.59 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
202 Tsu -Fe 24h Roots 0.39 >More info 0.59 >More info Tsu +Fe 24h Roots Original data GEO bulk
203 DC3000 7h 0.41 >More info 0.57 >More info Mock 7h DC3000 Original data GEO bulk
204 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.60 >More info 0.37 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
205 GST-overexpression seedlings control 0.63 >More info 0.34 >More info WT seedlings control Seedlings Original data
206 UV 0.47 >More info 0.50 >More info WT aerial region Original data GEO bulk
207 cat2-short-day 4d 0.45 >More info 0.52 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
208 1 h Light IP RNA -0.43 >More info -0.54 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
209 WT chitooctaose 0.38 >More info 0.59 >More info WT water Original data GEO bulk
210 dark-hs 0.41 >More info 0.56 >More info dark-control seedling Original data
211 seedling 24h after HZE WT 0.46 >More info 0.51 >More info seedling day 2 unirradiated WT 24h Original data
212 seedlings +5AC 0.56 >More info 0.40 >More info control seedlings 10-day old whole seedling Original data GEO bulk
213 Col upon hypoxia 6 hrs 0.55 >More info 0.41 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
214 root cells -Fe 0.54 >More info 0.42 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
215 OsSAP11 expressing -0.46 >More info -0.50 >More info WT seedlings Original data GEO bulk
216 Te ozone 0.55 >More info 0.40 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
217 atm3 -0.31 >More info -0.64 >More info Col0 whole plant Original data GEO bulk
218 col-5 hrpA 12h 0.41 >More info 0.54 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
219 Col ozone 3h 0.40 >More info 0.54 >More info Col clean-air 3h ozone Original data GEO bulk
220 irradiated leaf (WT 1d) 0.38 >More info 0.56 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
221 gai MeJA 1h -0.51 >More info -0.43 >More info Laer MeJA 1h leaf discs Original data GEO bulk
222 WT 24H Cold 0.42 >More info 0.52 >More info WT control Original data GEO bulk
223 Leaf wounded 0.20 >More info 0.74 >More info Leaf control vegetative leaf Original data GEO bulk
224 AtLysM RLK1 mutant chitooctaose -0.43 >More info -0.51 >More info WT chitooctaose Original data GEO bulk
225 bHLH122 ox -0.38 >More info -0.55 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
226 miR393 flg22 2h 0.36 >More info 0.57 >More info WT 0h Leaf tissue Original data GEO bulk
227 R. solani AG2-1 0.41 >More info 0.52 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
228 Kas-1 -Fe 24h -0.36 >More info -0.57 >More info Kas-1 +Fe 24h roots Original data GEO bulk
229 Kas -Fe 24h Roots -0.36 >More info -0.57 >More info Kas +Fe 24h Roots Original data GEO bulk
230 BLM+INA 0.41 >More info 0.52 >More info CK BLM and INA seedling Original data
231 seedling -S Exp 0.33 >More info 0.60 >More info seedling FN Exp seedling Original data
232 Laer Flg22 2h 0.53 >More info 0.39 >More info Laer Control leaf discs Original data GEO bulk
233 ulp1c ulp1d +Pto 0.40 >More info 0.52 >More info ulp1c ulp1d mock Original data GEO bulk
234 efr-1 +elf18 10h -0.38 >More info -0.54 >More info WT +elf18 10h elf18 Original data GEO bulk
235 Col leaf 100mM NaCl 0.52 >More info 0.39 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
236 Col leaf 100mM NaCl 0.52 >More info 0.39 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
237 Col 100mM NaCl 0.52 >More info 0.39 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
238 seedlings-week-old RECA1-overexpressing
transgenic		 0.38 >More info 0.53 >More info seedlings-week-old Col-0 seedlings Original data
239 +1.6 mM Tween 20 1 h. 0.59 >More info 0.32 >More info +distilled water 1 h. Original data GEO bulk
240 6h +Pi -0.41 >More info -0.50 >More info 6h -Pi root Original data GEO bulk
241 KAN1-GR 60min 0.56 >More info 0.34 >More info KAN1-GR 0min Original data GEO bulk
242 root columella root cap 40 mM NaCl 0.51 >More info 0.39 >More info root columella root cap Original data GEO bulk
243 9m.KCl 0.25 >More info 0.65 >More info To. KCl 14 day old Roots Original data GEO bulk
244 C24 ozone 0.53 >More info 0.36 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
245 root callus inducing medium 24h -0.61 >More info -0.28 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
246 rosettes WT drought 0.37 >More info 0.52 >More info rosettes WT watered Original data GEO bulk
247 msh1 albino 0.54 >More info 0.34 >More info WT aerial part Original data GEO bulk
248 15m.KCl 0.32 >More info 0.56 >More info To. KCl 14 day old Roots Original data GEO bulk
249 GA 0.34 >More info 0.54 >More info none GA Rosette Original data GEO bulk
250 RRE2 Chitin 0.52 >More info 0.36 >More info Chitin Original data GEO bulk
251 Laer pretreat GA Flg22 0h 0.61 >More info 0.27 >More info Laer pretreat water control leaf discs Original data GEO bulk
252 Ws 100mM NaCl 0.50 >More info 0.38 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
253 Ws leaf 100mM NaCl 0.50 >More info 0.38 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
254 Col-0 SA 0.52 >More info 0.36 >More info Col-0 Original data GEO bulk
255 Dark 40min pls UV-AB 5min 0.50 >More info 0.38 >More info Dark 45 min Original data Light treatments
256 ice1 control 0.36 >More info 0.52 >More info WT control Original data GEO bulk
257 irradiated leaf (cmt 5d) 0.38 >More info 0.50 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
258 Col-O high light 0.38 >More info 0.50 >More info Col-O bule light Original data GEO bulk
259 CT101 ozone 0.53 >More info 0.34 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
260 coi1-16 ein2 sid2 ctrl -0.54 >More info -0.33 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
261 root - 01% oxygen - 48h 0.32 >More info 0.55 >More info root - 21% oxygen - 48h Original data GEO bulk
262 npr1 sni1 SA 0.32 >More info 0.55 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
263 Whole root - low pH 3H 0.31 >More info 0.56 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
264 Osmotic Stress 24 h (shoot) 0.50 >More info 0.37 >More info Stress mock 24 h (shoot) Original data Stress treatments
265 seedling 3h after Gamma WT 0.27 >More info 0.60 >More info seedling day 1 unirradiated WT 3h Original data
266 npr1 sni1 brca2a SA -0.32 >More info -0.54 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
267 ani1 T0.5 -0.34 >More info -0.52 >More info WT T0.5 root tissue Original data GEO bulk
268 FLIGHT TAGESB plate6 ROOTS 0.33 >More info 0.53 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
269 rosettes myoox drought 0.34 >More info 0.51 >More info rosettes myoox watered Original data GEO bulk
270 current injection 0.29 >More info 0.56 >More info no current injection 4 microampere of electric current for 1 second Original data GEO bulk
271 penta MeJA 1h 0.62 >More info 0.23 >More info Laer MeJA 1h leaf discs Original data GEO bulk
272 SLWF infested 0.51 >More info 0.33 >More info SLWF uninfested rosette tissue Original data GEO bulk
273 ABA 0.5 h 0.32 >More info 0.52 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
274 root - 08% oxygen - 30min 0.19 >More info 0.65 >More info root - 21% oxygen - 30min Original data GEO bulk
275 npr1 sni1 ssn2 SA -0.32 >More info -0.52 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
276 Imidazolinone EC50 0.33 >More info 0.51 >More info Carrier (Imidazolinone) Original data GEO bulk
277 coi1-16 ein2 sid2 ozone 0.55 >More info 0.28 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
278 AtGATA2ox 0.51 >More info 0.32 >More info Col seedling Original data GEO bulk
279 HopZ1a treated 0.33 >More info 0.50 >More info col Original data GEO bulk
280 wrky33 Bc inoculation 14h 0.50 >More info 0.32 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
281 atgsnor1-1 -0.26 >More info -0.56 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
282 RRE1 Chitin 0.53 >More info 0.28 >More info Chitin Original data GEO bulk
283 WUSp cells 0.28 >More info 0.53 >More info Protoplast Induced Original data GEO bulk
284 Col in Pi deficiency medium 0.28 >More info 0.53 >More info Col in control medium root Original data GEO bulk
285 agb1 gpa1 +ABA GC -0.27 >More info -0.54 >More info Col-0 +ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
286 4C 1h 0.10 >More info 0.71 >More info 4C 0h Original data GEO bulk
287 M6PR transgenic leaf 100mM NaCl -0.29 >More info -0.51 >More info Col leaf 100mM NaCl leaf Original data GEO bulk
288 Rsch 8h 0.16 >More info 0.64 >More info Rsch CA Leaves Original data
289 FarRed Light 45min -0.21 >More info -0.59 >More info White Light 45min Original data Light treatments
290 Transgenic LEC2GR Seedling 1h Dex 0.50 >More info 0.29 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
291 root callus inducing medium 48 h -0.54 >More info -0.25 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
292 erf104-ko Flg22 4h 0.25 >More info 0.54 >More info erf104-ko H2O 4h Original data GEO bulk
293 Leaf systemic 0.16 >More info 0.63 >More info Leaf control vegetative leaf Original data GEO bulk
294 ABA control 0.27 >More info 0.52 >More info No ABA control Original data GEO bulk
295 3x(m) 0.25 >More info 0.54 >More info 2x two week old seedlings Original data
296 -Sulfate 24 h 0.15 >More info 0.63 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
297 bak1-3 +Pep2 2h 0.28 >More info 0.50 >More info WT +Pep2 2h Pep2 Original data GEO bulk
298 ckh1 CK0 0.51 >More info 0.26 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
299 aba2 1% sucrose 12-day-old 0.20 >More info 0.57 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
300 Aerobic e1 ate2 0.15 >More info 0.62 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
301 rao2 AntimycinA 3h -0.53 >More info -0.23 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
302 penta Flg22 2h 0.57 >More info 0.19 >More info Laer Flg22 2h leaf discs Original data GEO bulk
303 shoots WT 0uM Fe 0.54 >More info 0.22 >More info shoots WT 100uM Fe 0uM Fe shoots Original data GEO bulk
304 root callus inducing medium 96 h -0.52 >More info -0.24 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
305 CLV3p cells 0.24 >More info 0.52 >More info Protoplast Induced Original data GEO bulk
306 siliques AtHb1 control 0.24 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
307 PsJN -0.25 >More info -0.51 >More info Control inoculated with the PGPR bacterial model Burkholderia phytofirmans PsJN Plantlet Original data GEO bulk
308 desiccated mature pollen grains -0.24 >More info -0.52 >More info hydrated pollen grains Original data GEO bulk
309 WT NAA 1h 0.50 >More info 0.24 >More info WT 0h Leaf tissue Original data GEO bulk
310 Roots Cd -0.50 >More info -0.24 >More info Roots control Cd Root Original data GEO bulk
311 sps1 -0.51 >More info -0.23 >More info WT seedling Original data GEO bulk
312 Laer pretreat GA+JA Flg22 2h 0.54 >More info 0.20 >More info Laer pretreat water control leaf discs Original data GEO bulk
313 Te 8h 0.21 >More info 0.53 >More info Te CA Leaves Original data
314 root - 01% oxygen - 2h 0.12 >More info 0.60 >More info root - 21% oxygen - 2h Original data GEO bulk
315 npr1-3 DCA 48h 0.22 >More info 0.50 >More info npr1-3 MOCK 48h Original data GEO bulk
316 WT NAA 2h -0.21 >More info -0.50 >More info WT 0h Leaf tissue Original data GEO bulk
317 2hr transitory KNO3 PrR cell 0.55 >More info 0.15 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
318 rgs1+no sugars -0.20 >More info -0.50 >More info WT+no sugars rosette leaves Original data GEO bulk
319 Col BTH 0.01 >More info 0.67 >More info Col rosettes Original data GEO bulk
320 bri1-116 -0.06 >More info 0.73 >More info Col seedling Original data GEO bulk
321 pil5 red light 0.51 >More info 0.14 >More info Col-0 red light Original data GEO bulk
322 ex1 flu dark 8hours/30 minute light 0.09 >More info 0.56 >More info col dark 8hours/30 minute light Original data GEO bulk
323 opr3 JA 0.5 h 0.11 >More info 0.54 >More info opr3 0 h Original data GEO bulk
324 spx1 spx2 no Pi 0.52 >More info 0.12 >More info WT no Pi seedlings Original data
325 IAA7mII over-expressor IAA Treated -0.05 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
326 toc1-1-85hr 0.04 >More info 0.56 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
327 HairpinZ 4 h (leaf) 0.63 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
328 abh1 -ABA 0.09 >More info 0.51 >More info Col-0 -ABA Original data GEO bulk
329 CDB1-Knockout -0.03 >More info -0.56 >More info WT Original data GEO bulk
330 root - 04% oxygen - 48h -0.07 >More info 0.64 >More info root - 21% oxygen - 48h Original data GEO bulk
331 root - 04% oxygen - 2h -0.25 >More info 0.81 >More info root - 21% oxygen - 2h Original data GEO bulk
332 Col-0 24hpi A. brassicicola 0.53 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
333 toc1-1-89hr 0.05 >More info 0.50 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
334 20h Col-0 0.05 >More info -0.60 >More info 00h Col-0 Original data GEO bulk
335 atmyc2 Seedling BL 0.12 >More info -0.65 >More info WT Seedling BL Original data GEO bulk
336 46T-CK -0.05 >More info 0.53 >More info WT-CK none Original data
337 10min Reillumination Total RNA -0.51 >More info 0.04 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
338 seed germinating in countinuous light 24h SL -0.22 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
339 CCA1-ox 6am non-polysomal -0.07 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
340 Shoot apex inflorescence (after bolting) -0.26 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
341 root - 08% oxygen - 2h -0.21 >More info 0.54 >More info root - 21% oxygen - 2h Original data GEO bulk