4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Whole root - low pH 12H
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Whole root - low pH 12H		 Correlation to
Whole root - low pH 12H		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Whole root - low pH 12H 1.00 >More info 1.00 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
2 Whole root - low pH 24H 0.90 >More info 0.89 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
3 Whole root - low pH 6H 0.76 >More info 0.86 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
4 8hr-pH4.5 0.81 >More info 0.79 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
5 hira-root -0.77 >More info -0.76 >More info WT-root root Original data
6 whole roots -Fe 72 hour 0.82 >More info 0.70 >More info whole roots standard Original data GEO bulk
7 Fe starvation 72 h 0.82 >More info 0.70 >More info Control Original data GEO bulk
8 whole roots -Fe 48 hour 0.80 >More info 0.71 >More info whole roots standard Original data GEO bulk
9 6h +Pi -0.77 >More info -0.74 >More info 6h -Pi root Original data GEO bulk
10 Cocultivation 8 hrs root 0.78 >More info 0.70 >More info Mock cocultivation 8 hrs root Root Original data
11 Whole root - low pH 3H 0.62 >More info 0.85 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
12 AgNO3 3 h 0.68 >More info 0.77 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
13 root stele pH4.6 0.70 >More info 0.73 >More info root stele pH5.7 Original data GEO bulk
14 P.p 6hai 0.79 >More info 0.63 >More info At-Control roots Original data GEO bulk
15 P.p 10.5hai 0.78 >More info 0.63 >More info At-Control roots Original data GEO bulk
16 TNT-seedlings 0.65 >More info 0.76 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
17 seedlings-week-old RECA1-overexpressing
transgenic		 0.70 >More info 0.71 >More info seedlings-week-old Col-0 seedlings Original data
18 bak1-3 +Pep2 10h 0.78 >More info 0.62 >More info WT +Pep2 10h Pep2 Original data GEO bulk
19 P.p 2.5hai 0.76 >More info 0.63 >More info At-Control roots Original data GEO bulk
20 Fenclorim 4hr 0.75 >More info 0.62 >More info Acetone 4hr root Original data GEO bulk
21 oas-a1.1 Cd 18h 0.73 >More info 0.63 >More info Cd 18h root Root Original data GEO bulk
22 SA 0.74 >More info 0.62 >More info WT mock Whole seedling Original data GEO bulk
23 root Dosed gold 0.76 >More info 0.60 >More info root No gold .125 mM gold 24 h roots Original data
24 0.125 mM gold 24 h 0.76 >More info 0.60 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
25 root epidermis and lateral root cap pH4.6 0.67 >More info 0.67 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
26 CMP 4hr 0.73 >More info 0.61 >More info Acetone 4hr root Original data GEO bulk
27 WT roots - Fe 0.73 >More info 0.61 >More info WT roots + Fe Roots Original data GEO bulk
28 P.p 30hai 0.77 >More info 0.57 >More info At-Control roots Original data GEO bulk
29 Col-0 low oxygen 0.71 >More info 0.62 >More info Col-0 control low oxygen root Original data GEO bulk
30 9m.KCl 0.72 >More info 0.61 >More info To. KCl 14 day old Roots Original data GEO bulk
31 oligomycin 4 h 0.72 >More info 0.60 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
32 Fenclorim 24hr 0.72 >More info 0.59 >More info Acetone 24hr root Original data GEO bulk
33 5-Triiodobenzoic acid3 h 0.63 >More info 0.68 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
34 root longitudinal zone-3 pH 4.6 0.55 >More info 0.76 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
35 Phytoprostane A1 4 h 0.67 >More info 0.63 >More info Col-0 Original data GEO bulk
36 ahg2-1sid2-2 0.58 >More info 0.72 >More info WT (Col) control Original data GEO bulk
37 DFPM 0.72 >More info 0.57 >More info control Original data GEO bulk
38 root cortex pH4.6 0.67 >More info 0.61 >More info root cortex pH5.7 Original data GEO bulk
39 Col upon hypoxia 6 hrs 0.69 >More info 0.58 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
40 root columella root cap pH4.6 0.63 >More info 0.64 >More info root columella root cap pH5.7 Original data GEO bulk
41 COL-0-Fe--root 0.72 >More info 0.55 >More info COL-0-Ctrl--root root Original data
42 root cells endodermis 140mM NaCl 3 hours 0.68 >More info 0.58 >More info root cells endodermis standard 1 hour root cells endodermis Original data
43 WT 30μM arsenate 8 hours. 0.74 >More info 0.52 >More info WT control (not supplemented). Original data
44 oligomycin 1 h 0.61 >More info 0.64 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
45 root longitudinal zone-4 pH 4.6 0.54 >More info 0.70 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
46 pepr1-1 Pepr2-3 +Pep2 10h -0.71 >More info -0.52 >More info WT +Pep2 10h Pep2 Original data GEO bulk
47 dicamba 0.68 >More info 0.55 >More info WT mock whole seedling Original data GEO bulk
48 columella auxin 0.56 >More info 0.66 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
49 root longitudinal zone-1 pH 4.6 0.60 >More info 0.62 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
50 R. solani AG8 0.64 >More info 0.58 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
51 CMP 24hr 0.69 >More info 0.53 >More info Acetone 24hr root Original data GEO bulk
52 aba3-1 0.53 >More info 0.68 >More info wt Original data GEO bulk
53 Col-0 V. longisporum-inoculated 48 hpi 0.51 >More info 0.70 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
54 BLM+INA 0.69 >More info 0.52 >More info CK BLM and INA seedling Original data
55 root longitudinal zone-4 low sulfur -0.61 >More info -0.60 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
56 OXUPB1-2 meristematic zone 0.68 >More info 0.52 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
57 whole roots 140 mM NaCl 1 hour 0.71 >More info 0.49 >More info whole roots standard Original data GEO bulk
58 K starvation (root) 0.61 >More info 0.59 >More info Ws (root) Original data GEO bulk
59 Root -K 0.61 >More info 0.59 >More info Control-root Original data GEO bulk
60 pericycle auxin 0.56 >More info 0.63 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
61 15m.KCl 0.62 >More info 0.57 >More info To. KCl 14 day old Roots Original data GEO bulk
62 Shoot -Cs 0.50 >More info 0.68 >More info Control-shoot Original data GEO bulk
63 root longitudinal zone-2 pH 4.6 0.50 >More info 0.68 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
64 root endodermis and quiescent center pH4.6 0.54 >More info 0.64 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
65 toc1-1-49hr 0.58 >More info 0.60 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
66 whole roots 140 mM NaCl 30 minutes 0.70 >More info 0.47 >More info whole roots standard Original data GEO bulk
67 plant (tga2-5-6) 4h phytoprostane A1 0.61 >More info 0.56 >More info plant (tga2-5-6) 4h control Original data GEO bulk
68 35S::PI ap3-3 35S::AP-GR +DEX 0.46 >More info 0.71 >More info 0hr DEX Original data GEO bulk
69 Col -Fe 0.65 >More info 0.51 >More info Col-es root Original data GEO bulk
70 9 hr Hypoxia Total RNA 0.65 >More info 0.51 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
71 S15-118 0.56 >More info 0.60 >More info wt Original data GEO bulk
72 GO5; 8h switch to ambient CO2 concentrations; 0.54 >More info 0.62 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
73 bbx24 in Simulated Shade -0.65 >More info -0.50 >More info WT in simulated shade shade seedling Original data
74 BLM 0.64 >More info 0.51 >More info CK BLM seedling Original data
75 root cells endodermis 140mM NaCl 8 hours 0.64 >More info 0.51 >More info root cells endodermis standard 1 hour root cells endodermis Original data
76 Tsu -Fe 24h Roots 0.60 >More info 0.55 >More info Tsu +Fe 24h Roots Original data GEO bulk
77 Tsu-1 -Fe 24h 0.60 >More info 0.55 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
78 bak1-3 +Pep2 2h 0.55 >More info 0.59 >More info WT +Pep2 2h Pep2 Original data GEO bulk
79 pepr1-1 Pepr2-3 +Pep2 2h -0.62 >More info -0.52 >More info WT +Pep2 2h Pep2 Original data GEO bulk
80 efr-1 +elf18 10h -0.67 >More info -0.47 >More info WT +elf18 10h elf18 Original data GEO bulk
81 roots IAA 0.57 >More info 0.57 >More info roots mock Original data GEO bulk
82 24h +Pi -0.65 >More info -0.47 >More info 24h -Pi root Original data GEO bulk
83 Col-0 9 hpi A. brassicicola 0.53 >More info 0.59 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
84 Col BTH 0.45 >More info 0.67 >More info Col rosettes Original data GEO bulk
85 Chemically 0.45 >More info 0.67 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
86 LTN008-2 aza-dc 0.69 >More info 0.43 >More info LTN012-2 Mock Original data
87 dde2-2 9 hpi A. brassicicola 0.54 >More info 0.57 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
88 ein2-1 9 hpi A. brassicicola 0.51 >More info 0.60 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
89 C24-1h IAA 0.58 >More info 0.53 >More info C24-0h IAA whole plant Original data GEO bulk
90 9 hr Hypoxia 1 hr recovery Total RNA 0.60 >More info 0.51 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
91 ani1 T16 -0.64 >More info -0.47 >More info WT T16 root tissue Original data GEO bulk
92 Col0-PsmES4326-24hpi 0.50 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
93 Laer pretreat GA Flg22 1h 0.40 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
94 root columella root cap -S -0.58 >More info -0.52 >More info root columella root cap pH5.7 Original data GEO bulk
95 dorn1-1 Root 100 mM ATP 30 min -0.53 >More info -0.57 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
96 camta1/3 warm 0.51 >More info 0.59 >More info WT warm entire aerial part Original data GEO bulk
97 Octopus overexpressor 35SDYG25 0.60 >More info 0.50 >More info WS Original data GEO bulk
98 4C 1h 0.56 >More info 0.54 >More info 4C 0h Original data GEO bulk
99 Whole root - low pH 1H 0.34 >More info 0.76 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
100 IAA 2h 0.45 >More info 0.65 >More info control 2h root Original data GEO bulk
101 CeO2 germinant -0.38 >More info -0.72 >More info Millipore Water germinant CeO2 seedling Original data
102 toc1-1-81hr 0.55 >More info 0.54 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
103 WT AntimycinA 3h 0.57 >More info 0.52 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
104 Chitosan 3h Treatment 0.60 >More info 0.49 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
105 toc1-1-85hr 0.50 >More info 0.58 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
106 A. thaliana-A. lyrata hybrid -0.53 >More info -0.55 >More info A. thaliana mature leaves before flowering Original data GEO bulk
107 root cells cortex 140mM NaCl 8 hours 0.56 >More info 0.52 >More info root cells cortex standard 1 hour root cells cortex Original data
108 toc1-1-53hr 0.56 >More info 0.52 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
109 IAA/inhibitor B Treated 0.48 >More info 0.60 >More info IAA Treated Original data GEO bulk
110 Cor hrpS 10h 0.47 >More info 0.61 >More info Mock 10h Cor hrpS Original data GEO bulk
111 toc1-1-65hr 0.61 >More info 0.46 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
112 SCR-GR Time 12H Dex 0.65 >More info 0.42 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
113 WT +elf18 10h 0.66 >More info 0.41 >More info WT untreated elf18 Original data GEO bulk
114 Sulfometuron EC50 0.51 >More info 0.56 >More info Carrier Original data GEO bulk
115 Nicotinamide-81hr 0.58 >More info 0.49 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
116 Mutant siz1-3 (Drought) 0.59 >More info 0.48 >More info Col-0 (Drought) Original data GEO bulk
117 siz1-3 drought 0.59 >More info 0.48 >More info Col-0 drought Original data GEO bulk
118 root cells stele 140mM NaCl 3 hours 0.59 >More info 0.48 >More info root cells stele standard 1 hour root cells stele Original data
119 Col ozone 3h 0.49 >More info 0.58 >More info Col clean-air 3h ozone Original data GEO bulk
120 epidermis auxin 0.48 >More info 0.59 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
121 coi1-2 0.57 >More info 0.49 >More info Col-0 mock Whole seedling Original data GEO bulk
122 Nicotinamide-61hr 0.56 >More info 0.50 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
123 Triazolopyrimidine EC50 0.52 >More info 0.54 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
124 nia1nia2 0.56 >More info 0.50 >More info Col-0 whole seedlings Original data GEO bulk
125 Nicotinamide-57hr 0.56 >More info 0.50 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
126 root endodermis -S -0.47 >More info -0.59 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
127 Root dark control 24h 0.61 >More info 0.44 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
128 root longitudinal zone-4 -Fe 0.59 >More info 0.46 >More info root longitudinal zone-4 standard Original data GEO bulk
129 WT chitooctaose 0.60 >More info 0.45 >More info WT water Original data GEO bulk
130 tor mutant glucose 0.52 >More info 0.53 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
131 wavy 0.58 >More info 0.47 >More info WT Original data GEO bulk
132 WT 3h -P 0.48 >More info 0.57 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
133 Nicotinamide-85hr 0.52 >More info 0.52 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
134 Elevated CO2 AMPLE N NIGHT 0.53 >More info 0.51 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
135 Seedling KUA1-IOX est 0.57 >More info 0.47 >More info Seedling KUA1-IOX mock Original data
136 S58-2 0.52 >More info 0.52 >More info wt Original data GEO bulk
137 root hypoxia total 0.57 >More info 0.47 >More info root control total Original data GEO bulk
138 Col whole leaf 5dpi 0.56 >More info 0.48 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
139 SCR-GR Time 1H Dex 0.43 >More info 0.61 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
140 Primisulfuron EC50 0.51 >More info 0.52 >More info Carrier (primisulfuron) Original data GEO bulk
141 C24-3h IAA 0.57 >More info 0.46 >More info C24-0h IAA whole plant Original data GEO bulk
142 plant (Col-0) 4h phytoprostane A1 0.54 >More info 0.49 >More info plant (tga2-5-6) 4h control Original data GEO bulk
143 Nicotinamide-53hr 0.51 >More info 0.51 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
144 embryo paclobutrazol 0.59 >More info 0.43 >More info embryo-control paclobutrazol embryo Original data GEO bulk
145 35S:RPS4 eds1-2 8h -0.53 >More info -0.49 >More info 35S:RPS4 8h leaves Original data
146 toc1-1-57hr 0.58 >More info 0.44 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
147 S14-150 0.46 >More info 0.56 >More info wt Original data GEO bulk
148 camta1/2/3 24h cold 0.52 >More info 0.49 >More info WT 24h cold 24h cold entire aerial part Original data GEO bulk
149 cpr5 0.59 >More info 0.42 >More info WT seedling Original data GEO bulk
150 Nicotinamide-65hr 0.56 >More info 0.45 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
151 ARR22-ox (t-zeatin 3 h) 0.50 >More info 0.51 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
152 roottip control pWOL 0.44 >More info 0.57 >More info roottip control total control roottip Original data GEO bulk
153 1h +Pi -0.47 >More info -0.54 >More info 1h -Pi root Original data GEO bulk
154 chito-octamer 0.54 >More info 0.46 >More info Col Mock Original data GEO bulk
155 cat2-hCO2 -0.50 >More info -0.50 >More info Col0-hCO2 grown for five weeks at high CO2 concentration (3000 ppm) in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
156 root cells endodermis 140mM NaCl 1 hour 0.60 >More info 0.40 >More info root cells endodermis standard 1 hour root cells endodermis Original data
157 Col-0 wt Hypoxic 0.63 >More info 0.37 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
158 root cells cortex 140mM NaCl 20 hours 0.53 >More info 0.47 >More info root cells cortex standard 1 hour root cells cortex Original data
159 sid2-2 9 hpi A. brassicicola 0.48 >More info 0.52 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
160 Col-0 2HS 0.57 >More info 0.42 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
161 Col-0 2h NAA 0.51 >More info 0.48 >More info Col-0 6h MOCK Original data GEO bulk
162 Root submergence 24h 0.58 >More info 0.41 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
163 embryo ABA 0.59 >More info 0.40 >More info embryo-control ABA embryo Original data GEO bulk
164 col-5 hrpA 12h 0.49 >More info 0.50 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
165 Root GLU1-KO -0.50 >More info -0.48 >More info Root Col(0) roots Original data GEO bulk
166 Fei-0-3h IAA 0.53 >More info 0.45 >More info Fei-0-0h IAA whole plant Original data GEO bulk
167 4d red light grown hmr-5 seedlings 0.58 >More info 0.40 >More info 4d red light grown WT(Col-0) seedlings Original data
168 ataf1-1 mutant Col-0 Bgh inoculated 0.53 >More info 0.45 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
169 IMI 4mM 0.54 >More info 0.44 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
170 inhibitor A Treated 0.45 >More info 0.53 >More info Negative Control Original data GEO bulk
171 CLO 4mM 0.48 >More info 0.50 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
172 R. solani AG2-1 0.48 >More info 0.50 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
173 root longitudinal zone-2 low sulfur -0.42 >More info -0.56 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
174 root cells cortex 140mM NaCl 3 hours 0.48 >More info 0.50 >More info root cells cortex standard 1 hour root cells cortex Original data
175 Col-0 Root 100 mM ATP 30 min 0.55 >More info 0.42 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
176 wrky33 Bc inoculation 14h 0.60 >More info 0.37 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
177 IAA/inhibitor A Treated 0.56 >More info 0.41 >More info IAA Treated Original data GEO bulk
178 pmr5 pmr6 0.52 >More info 0.45 >More info Col-0 Original data GEO bulk
179 cdkf:1-2 0.59 >More info 0.38 >More info wt seedling young seedlings Original data GEO bulk
180 toc1-1-73hr 0.53 >More info 0.44 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
181 Cycloheximide 3 h 0.51 >More info 0.46 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
182 camta1/2/3 warm 0.52 >More info 0.45 >More info WT warm entire aerial part Original data GEO bulk
183 root cells endodermis 140mM NaCl 48 hours 0.54 >More info 0.43 >More info root cells endodermis standard 1 hour root cells endodermis Original data
184 Laer treat paclobutrazol (PAC) 0.53 >More info 0.44 >More info Laer Control leaf discs Original data GEO bulk
185 ABA DFPM 0.61 >More info 0.36 >More info control Original data GEO bulk
186 12m.KCl 0.40 >More info 0.57 >More info To. KCl 14 day old Roots Original data GEO bulk
187 (Ws-2)+100 uM As 0.46 >More info 0.51 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
188 WT+H2O2 0.37 >More info 0.60 >More info WT H2O2 Original data GEO bulk
189 WT +elf18 2h 0.60 >More info 0.36 >More info WT untreated elf18 Original data GEO bulk
190 3m.KCl 0.63 >More info 0.33 >More info To. KCl 14 day old Roots Original data GEO bulk
191 chito-tetramer 0.50 >More info 0.46 >More info Col Mock Original data GEO bulk
192 AvrRpm1 2 h (leaf) 0.50 >More info 0.46 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
193 camta2/3 warm 0.50 >More info 0.46 >More info WT warm entire aerial part Original data GEO bulk
194 Col whole leaf 7dpi 0.52 >More info 0.44 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
195 root cells epidermis 140mM NaCl 48 hours 0.52 >More info 0.44 >More info root cells epidermis standard 1 hour root cells epidermis Original data
196 npr1-3 DCA 48h 0.53 >More info 0.43 >More info npr1-3 MOCK 48h Original data GEO bulk
197 Nicotinamide-73hr 0.53 >More info 0.43 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
198 til1-1 22C 0.36 >More info 0.60 >More info Col-0 22C Original data GEO bulk
199 afb3-1 2h KNO3 0.36 >More info 0.60 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
200 root cells endodermis 140mM NaCl 20 hours 0.56 >More info 0.39 >More info root cells endodermis standard 1 hour root cells endodermis Original data
201 anac017-2 AntimycinA 3h -0.56 >More info -0.39 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
202 mkk1/mkk2 control rep 0.56 >More info 0.39 >More info Col-0 Time 0 rep Original data GEO bulk
203 atmospheric CO2 high Mg root -0.60 >More info -0.35 >More info atmospheric CO2 normal Mg root Root Original data
204 CT101 ozone 0.57 >More info 0.38 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
205 smg7b-1 0.51 >More info 0.44 >More info WT whole plant Original data GEO bulk
206 Te ozone 0.54 >More info 0.41 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
207 UV 0.54 >More info 0.41 >More info WT aerial region Original data GEO bulk
208 mkk1/mkk2 24h BTH rep 0.52 >More info 0.43 >More info Col-0 24h BTH rep Original data GEO bulk
209 Salicylic Acid 3 h 0.35 >More info 0.60 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
210 Nicotinamide-49hr 0.56 >More info 0.38 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
211 ahg2-1 0.39 >More info 0.55 >More info WT (Col) control Original data GEO bulk
212 root cells stele 140mM NaCl 8 hours 0.51 >More info 0.43 >More info root cells stele standard 1 hour root cells stele Original data
213 cpr5scv1 0.52 >More info 0.42 >More info WT(COL) Original data GEO bulk
214 SCL3 OE -0.51 >More info -0.43 >More info Col-0 whole root Original data GEO bulk
215 SCR 48hr-S 0.52 >More info 0.42 >More info SCR 0hr endodermis Original data
216 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.60 >More info 0.34 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
217 WT-SA 0.50 >More info 0.44 >More info WT-mock spray 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
218 Col-Luc WT 3h antimycin A 0.50 >More info 0.44 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
219 B.cinerea 18 h infection 0.41 >More info 0.53 >More info Mock 18 h Original data Botrytis cinerea infection
220 Botrytis cinerea 18h 0.41 >More info 0.53 >More info control 18h Original data GEO bulk
221 9 hr Hypoxia IP RNA 0.55 >More info 0.38 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
222 WT Bc inoculation 14h 0.56 >More info 0.37 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
223 IAA 0h -0.56 >More info -0.37 >More info control 0h root Original data GEO bulk
224 root longitudinal zone-1 low sulfur -0.39 >More info -0.54 >More info root longitudinal zone-1 pH 5.7 Original data GEO bulk
225 protoplasted roots pH4.6 0.58 >More info 0.35 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
226 WT Col-0 Bgh inoculated 0.52 >More info 0.41 >More info WT Col-0 Un-inoculated Original data GEO bulk
227 low CO2 + light 0.42 >More info 0.51 >More info normal CO2 + light Original data GEO bulk
228 Root -Cs 0.42 >More info 0.51 >More info Control-root Original data GEO bulk
229 (Col-0)+200 uM As 0.54 >More info 0.38 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
230 OH1 0.52 >More info 0.40 >More info Col-0 leaves Original data GEO bulk
231 seedlings +5AC 0.59 >More info 0.33 >More info control seedlings 10-day old whole seedling Original data GEO bulk
232 WT (Col) glucose -0.59 >More info -0.33 >More info WT (Col) glucose seedlings Original data GEO bulk
233 WT +Pep2 2h 0.57 >More info 0.35 >More info WT untreated Pep2 Original data GEO bulk
234 Laer Flg22 2h 0.41 >More info 0.51 >More info Laer Control leaf discs Original data GEO bulk
235 AtLysM RLK1 mutant water 0.56 >More info 0.35 >More info WT water Original data GEO bulk
236 cpr5npr1 0.53 >More info 0.38 >More info WT(COL) Original data GEO bulk
237 2 hr Hypoxia Total RNA 0.53 >More info 0.38 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
238 toc1-1-69hr 0.56 >More info 0.35 >More info WT-untreated-69hr none seedlings aerial tissue Original data GEO bulk
239 OXUPB1-2 elongation zone 0.53 >More info 0.38 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
240 siliques AtHb1 control 0.39 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
241 phr1 Shoot-Pi 0.61 >More info 0.30 >More info WT Root-Pi shoots Original data GEO bulk
242 gai Control 0.59 >More info 0.32 >More info Laer Control leaf discs Original data GEO bulk
243 toc1-1-77hr 0.55 >More info 0.35 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
244 root cells cortex 140mM NaCl 1 hour 0.50 >More info 0.40 >More info root cells cortex standard 1 hour root cells cortex Original data
245 sni1 0.50 >More info 0.40 >More info WT Original data GEO bulk
246 cop1 Seedling BL+ABA 0.55 >More info 0.35 >More info WT Seedling BL+ABA Original data GEO bulk
247 9 hr Hypoxia 1 hr recovery IP RNA 0.54 >More info 0.36 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
248 root endodermis and quiescent center 40 mM NaCl 0.50 >More info 0.40 >More info root endodermis and quiescent center Original data GEO bulk
249 amiRAP aerobic -0.36 >More info -0.54 >More info WT aerobic aerobic Original data GEO bulk
250 IAA 3 h 0.33 >More info 0.57 >More info Mock 3 h Original data Basic hormone treatment of seedlings
251 Rose Bengal 0.5 uM 0.33 >More info 0.57 >More info Control RB and PER Rose Bengal Original data
252 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.55 >More info 0.34 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
253 pad4-PsmES4326-24hpi -0.50 >More info -0.39 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
254 Nicotinamide-69hr 0.51 >More info 0.38 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
255 csn5 (csn5a-2 csn5b) light 0.52 >More info 0.37 >More info WT light Original data GEO bulk
256 WT+chitooctaose 0.36 >More info 0.53 >More info WT+water chitooctaose seedlings Original data GEO bulk
257 AFB1 0h 0.57 >More info 0.32 >More info Col 0h Leaf Original data GEO bulk
258 HRE1-RNAi20 normoxia -0.34 >More info -0.54 >More info Col upon normoxia normoxia seedling roots Original data GEO bulk
259 npr1-1 SA -0.51 >More info -0.37 >More info Col-0 SA complete seedling Original data
260 INA 0.53 >More info 0.35 >More info CK INA seedling Original data
261 eds16 whole leaf 5dpi -0.51 >More info -0.37 >More info Col whole leaf 5dpi whole leaf Original data GEO bulk
262 C24 ozone 0.53 >More info 0.35 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
263 CAX1/CAX3 mutant 0.53 >More info 0.35 >More info Col whole plant Original data GEO bulk
264 coi1-16 ein2 sid2 ctrl -0.53 >More info -0.35 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
265 WT leaves - Fe 0.58 >More info 0.30 >More info WT leaves + Fe Leaves Original data GEO bulk
266 Col-0 ozone 0.55 >More info 0.32 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
267 IAA 0.5 h 0.32 >More info 0.55 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
268 root cells epidermis 140mM NaCl 20 hours 0.51 >More info 0.36 >More info root cells epidermis standard 1 hour root cells epidermis Original data
269 WT-NOCO2 INFECTED 0.51 >More info 0.36 >More info WT-MOCK Original data GEO bulk
270 glk1 glk2 GLK1-GR +DEX 24h -0.62 >More info -0.25 >More info glk1 glk2 GLK1-GR mock 24h dexamethasone whole seedlings Original data GEO bulk
271 WT in -N 0.36 >More info 0.51 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
272 RRE2 Chitin 0.54 >More info 0.32 >More info Chitin Original data GEO bulk
273 +GA-60mins -0.56 >More info -0.30 >More info -60mins whole plant Original data GEO bulk
274 Mutant axr3-1 (IAA) 0.33 >More info 0.53 >More info Col (IAA) Original data GEO bulk
275 Leafminer damaged seedlings 0.30 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
276 Root -P -0.54 >More info -0.31 >More info Root Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
277 4C 2h(SOIL) 0.54 >More info 0.31 >More info 4C 0h(SOIL) Original data GEO bulk
278 cpr5 0.51 >More info 0.34 >More info WT(COL) Original data GEO bulk
279 root cells endodermis 140mM NaCl 32 hours 0.52 >More info 0.33 >More info root cells endodermis standard 1 hour root cells endodermis Original data
280 WT-16ºC -0.50 >More info -0.35 >More info WT-23ºC Original data GEO bulk
281 WT +Pep2 10h 0.57 >More info 0.28 >More info WT untreated Pep2 Original data GEO bulk
282 QK HS 0.50 >More info 0.35 >More info QK control heat shocked seedling Original data GEO bulk
283 Col-0 INA 48h 0.50 >More info 0.34 >More info Col-0 MOCK 48h Original data GEO bulk
284 Ibuprofen 3 h 0.29 >More info 0.55 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
285 shoots bhlh100/101 0uM Fe 0.50 >More info 0.33 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
286 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.50 >More info -0.33 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
287 coi1-16 ein2 sid2 ozone 0.51 >More info 0.32 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
288 8h-DC3000 avrRpm1 0.28 >More info 0.55 >More info 8h-DC3000 leaves Original data GEO bulk
289 Root P recovery 0.59 >More info 0.24 >More info Root -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
290 Mutant ufo-1(flower) 0.53 >More info 0.29 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
291 cngc4 0.54 >More info 0.28 >More info Ws-2 Seedlings Original data GEO bulk
292 inhibitor B Treated 0.30 >More info 0.52 >More info Negative Control Original data GEO bulk
293 WR 35S 8h BL 0.59 >More info 0.23 >More info WR 35S 0h BL brassinosteroid root Original data
294 irradiated leaf (WT 1d) 0.52 >More info 0.29 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
295 atmospheric CO2 low Mg shoot 0.50 >More info 0.31 >More info atmospheric CO2 normal Mg shoot Shoot Original data
296 Cold Stress 24 h (root) 0.51 >More info 0.29 >More info Stress mock 24 h (root) Original data Stress treatments
297 agb1 gpa1 -ABA GC -0.28 >More info -0.52 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
298 Heat shock optimum 0.14 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
299 csn3-1 light 0.50 >More info 0.28 >More info WT light Original data GEO bulk
300 IAA7mII over-expressor IAA Treated 0.09 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
301 Bay-0-30min IAA 0.53 >More info 0.24 >More info Bay-0-0h IAA whole plant Original data GEO bulk
302 Elevated CO2 expanding leaf 0.50 >More info 0.27 >More info Ambient CO2 expanding leaf expanding leaf Original data
303 toc1-1-61hr 0.53 >More info 0.24 >More info WT-untreated-61hr none seedlings aerial tissue Original data GEO bulk
304 35S:RPS4 eds1-2 2h -0.23 >More info -0.54 >More info 35S:RPS4 2h leaves Original data
305 E.orontii Infection 3 day 0.24 >More info 0.51 >More info Uninfection 3 day Original data Elicitor treatments
306 seedlings + TSA 0.56 >More info 0.18 >More info control seedlings 10-day old whole seedling Original data GEO bulk
307 rcf1-1 cold 24h 0.22 >More info 0.52 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
308 myb3 myb3r4d 0.23 >More info 0.50 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
309 ubc13A -Fe -0.55 >More info -0.17 >More info Col -Fe root Original data GEO bulk
310 upb1-1 meristematic zone -0.18 >More info -0.54 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
311 akt1-1 0.20 >More info 0.51 >More info Ws-2 Seedlings Original data GEO bulk
312 Mutant nph4-1_arf19-1 0.51 >More info 0.19 >More info Col Original data GEO bulk
313 aux1 mutant roots ethylene 0.06 >More info 0.64 >More info roots air Original data GEO bulk
314 GRX-overexpression seedlings MV -0.16 >More info -0.53 >More info WT seedlings MV Seedlings Original data GEO bulk
315 Atwrky63 -0.51 >More info -0.17 >More info Col0 none leaf Original data GEO bulk
316 ANAC102 knock-out -0.52 >More info -0.16 >More info Col-0 Original data GEO bulk
317 vte1-1 3d vernalization -0.51 >More info -0.16 >More info WT 3d vernalization Original data GEO bulk
318 FOX line K16331 0.52 >More info 0.15 >More info empty vector control (T3) FOX lines Original data GEO bulk
319 SA Treated 0.59 >More info 0.08 >More info Water Original data GEO bulk
320 miR393 0h -0.16 >More info -0.50 >More info WT 0h Leaf tissue Original data GEO bulk
321 iron minus 24h 0.08 >More info 0.58 >More info iron +24h root Original data GEO bulk
322 2h KNO3 Whole root -0.12 >More info -0.52 >More info 2h KCl control Whole root Whole root Original data GEO bulk
323 bri1-116 -0.11 >More info 0.73 >More info Col seedling Original data GEO bulk
324 CCA1-ox 6am non-polysomal 0.11 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
325 E2Fa-Dpa 0.56 >More info 0.01 >More info WT Original data GEO bulk
326 aln-1 -0.52 >More info -0.05 >More info Col-0 Aerial part of seedlings Original data
327 Ler KAR1 24h seed 0.05 >More info 0.52 >More info Ler WATER 24h seed KAR1 seed Original data GEO bulk
328 QC -0.50 >More info -0.05 >More info Control for tissue data FACS-sorted protoplasts from roots Original data
329 Col-0 24hpi A. brassicicola 0.53 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
330 Shoot apex inflorescence (after bolting) -0.10 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
331 miR 0h 0.53 >More info 0.01 >More info Col 0h Leaf Original data GEO bulk
332 8 hr ammonium 0.50 >More info 0.04 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
333 tga1 tga4 2h KNO3 0.05 >More info -0.58 >More info Col 0 2h KNO3 5 mM KNO3 root Original data GEO bulk
334 t-zeatin 1 h 0.08 >More info -0.55 >More info Mock 1 h Original data Basic hormone treatment of seedlings
335 seed germinating in countinuous light 24h SL -0.24 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
336 roots ethylene -0.11 >More info 0.54 >More info roots air Original data GEO bulk
337 Col PSTDC3000 24h 0.52 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
338 4d red light grown hmr-22 seedlings 0.53 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data