4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on Col-0 2HS
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List of experiments correlated with "Col-0 2HS"  Help Download transcriptome of top 30
Score Experiment Correlation from
Col-0 2HS		 Correlation to
Col-0 2HS		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 Col-0 2HS 1.00 >More info 1.00 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
2 2 hr Hypoxia Total RNA 0.94 >More info 0.92 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
3 shoot hypoxia total 0.83 >More info 0.92 >More info shoot control total Original data GEO bulk
4 2 hr Hypoxia IP RNA 0.88 >More info 0.85 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
5 Col-0 wt Hypoxic 0.85 >More info 0.87 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
6 MPK6 ox Shoot Hypoxia 0.86 >More info 0.83 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
7 WT Shoot Hypoxia 0.86 >More info 0.83 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
8 9 hr Hypoxia Total RNA 0.87 >More info 0.81 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
9 9 hr Hypoxia IP RNA 0.87 >More info 0.80 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
10 WT Root Hypoxia 0.77 >More info 0.85 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
11 root hypoxia total 0.80 >More info 0.81 >More info root control total Original data GEO bulk
12 root - 01% oxygen - 2h 0.75 >More info 0.86 >More info root - 21% oxygen - 2h Original data GEO bulk
13 roottip hypoxia total 0.79 >More info 0.81 >More info roottip control total Original data GEO bulk
14 Col-0 low oxygen 0.81 >More info 0.76 >More info Col-0 control low oxygen root Original data GEO bulk
15 9 hr Hypoxia 1 hr recovery Total RNA 0.77 >More info 0.75 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
16 MPK6 ox Root Hypoxia 0.77 >More info 0.74 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
17 TNT-seedlings 0.66 >More info 0.84 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
18 Anoxia 0.76 >More info 0.72 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
19 9 hr Hypoxia 1 hr recovery IP RNA 0.74 >More info 0.71 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
20 Aerobic prt6 0.63 >More info 0.75 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
21 Aerobic e1 ate2 0.63 >More info 0.75 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
22 root - 01% oxygen - 30min 0.58 >More info 0.80 >More info root - 21% oxygen - 30min Original data GEO bulk
23 WT seedlings MV 0.71 >More info 0.66 >More info WT seedlings control Seedlings Original data GEO bulk
24 oligomycin 1 h 0.65 >More info 0.72 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
25 Col upon hypoxia 6 hrs 0.75 >More info 0.56 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
26 shoot-10 μM DEX- 24hr 0.60 >More info 0.70 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
27 bHLH122 ox -0.62 >More info -0.65 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
28 root - 08% oxygen - 2h 0.45 >More info 0.82 >More info root - 21% oxygen - 2h Original data GEO bulk
29 1.5 hr ammonium 0.74 >More info 0.51 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
30 TA induced 0.70 >More info 0.55 >More info Methanol TA Suspension cells Original data GEO bulk
31 root - 04% oxygen - 2h 0.45 >More info 0.80 >More info root - 21% oxygen - 2h Original data GEO bulk
32 Col-0 37C 0.63 >More info 0.61 >More info Col-0 22C Original data GEO bulk
33 shoot-10 μM DEX- 12 hr 0.60 >More info 0.64 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
34 Seedling-HeatStressed POLYSOMESmRNA 0.63 >More info 0.61 >More info Seedling-control POLYSOMESmRNA seedling Original data
35 WT AntimycinA 3h 0.61 >More info 0.63 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
36 Seedling-HeatStressed TOTALmRNA 0.62 >More info 0.62 >More info Seedling-control TOTALmRNA seedling Original data
37 Col-Luc WT 3h antimycin A 0.69 >More info 0.55 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
38 Light 0.73 >More info 0.50 >More info Control Original data GEO bulk
39 1 h Light Total RNA -0.66 >More info -0.57 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
40 WT+H2O2 0.56 >More info 0.66 >More info WT H2O2 Original data GEO bulk
41 P.p 6hai 0.74 >More info 0.47 >More info At-Control roots Original data GEO bulk
42 IAA/inhibitor A Treated 0.68 >More info 0.53 >More info IAA Treated Original data GEO bulk
43 Heat and anoxia 0.58 >More info 0.63 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
44 OsSAP11 expressing -0.60 >More info -0.61 >More info WT seedlings Original data GEO bulk
45 AgNO3 3 h 0.51 >More info 0.70 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
46 CeO2 germinant -0.61 >More info -0.60 >More info Millipore Water germinant CeO2 seedling Original data
47 vtc2 mature somatic embryo 0.64 >More info 0.56 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
48 IMI 4mM 0.66 >More info 0.54 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
49 oas-a1.1 Cd 18h 0.61 >More info 0.59 >More info Cd 18h root Root Original data GEO bulk
50 Col-0 low oxygen 0.75 >More info 0.45 >More info Col-0 Original data GEO bulk
51 FHY3p dark+DEX -0.71 >More info -0.49 >More info FHY3p dark+mock Original data GEO bulk
52 flu 0.57 >More info 0.62 >More info WT Col Original data GEO bulk
53 FLIGHT TAGESB plate6 SHOOTS 0.60 >More info 0.59 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
54 Col0-PsmES4326-24hpi 0.58 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
55 3x(m) 0.37 >More info 0.81 >More info 2x two week old seedlings Original data
56 rcf1-1 cold 24h 0.60 >More info 0.58 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
57 ex2 flu dark 8hours/30 minute light 0.48 >More info 0.70 >More info col dark 8hours/30 minute light Original data GEO bulk
58 Col-0 HS 0.45 >More info 0.71 >More info Col-0 control heat shocked seedling Original data GEO bulk
59 WT (Col-0) heat shock 0.45 >More info 0.71 >More info WT (Col-0) whole seedling Original data GEO bulk
60 Mutant axr3-1 (IAA) 0.58 >More info 0.57 >More info Col (IAA) Original data GEO bulk
61 root - 01% oxygen - 48h 0.50 >More info 0.65 >More info root - 21% oxygen - 48h Original data GEO bulk
62 low CO2 + light 0.59 >More info 0.56 >More info normal CO2 + light Original data GEO bulk
63 inhibitor B Treated 0.54 >More info 0.61 >More info Negative Control Original data GEO bulk
64 Shoot -K 0.61 >More info 0.54 >More info Control-shoot Original data GEO bulk
65 K starvation (shoot) 0.61 >More info 0.54 >More info Ws (shoot) Original data GEO bulk
66 root - 04% oxygen - 30min 0.36 >More info 0.79 >More info root - 21% oxygen - 30min Original data GEO bulk
67 shoot-10 μM DEX- 6 hr 0.59 >More info 0.55 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
68 Cycloheximide 3 h 0.54 >More info 0.60 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
69 10min Reillumination Total RNA -0.44 >More info -0.70 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
70 whole roots 140 mM NaCl 30 minutes 0.55 >More info 0.58 >More info whole roots standard Original data GEO bulk
71 pmr5 pmr6 0.65 >More info 0.48 >More info Col-0 Original data GEO bulk
72 root - 08% oxygen - 30min 0.31 >More info 0.82 >More info root - 21% oxygen - 30min Original data GEO bulk
73 sfr6 drought -0.43 >More info -0.70 >More info WT drought All aerial tissue Original data GEO bulk
74 ein2-1 9 hpi A. brassicicola 0.62 >More info 0.50 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
75 SCR-GR Time 12H Dex 0.66 >More info 0.46 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
76 P.p 2.5hai 0.66 >More info 0.46 >More info At-Control roots Original data GEO bulk
77 root callus inducing medium 24h -0.73 >More info -0.39 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
78 oligomycin 4 h 0.56 >More info 0.55 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
79 2hr transitory KNO3 PrR cell 0.44 >More info 0.67 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
80 1 h Light IP RNA -0.62 >More info -0.49 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
81 flu dark 8hours/30 minute light 0.47 >More info 0.64 >More info col dark 8hours/30 minute light Original data GEO bulk
82 35S:RPS4 eds1-2 2h -0.48 >More info -0.63 >More info 35S:RPS4 2h leaves Original data
83 CMP 4hr 0.57 >More info 0.53 >More info Acetone 4hr root Original data GEO bulk
84 anac017-2 AntimycinA 3h -0.64 >More info -0.46 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
85 gai Control 0.70 >More info 0.40 >More info Laer Control leaf discs Original data GEO bulk
86 CMP 24hr 0.64 >More info 0.46 >More info Acetone 24hr root Original data GEO bulk
87 Ws HS 0.48 >More info 0.62 >More info Ws control heat shocked seedling Original data GEO bulk
88 Rose Bengal 0.5 uM 0.39 >More info 0.71 >More info Control RB and PER Rose Bengal Original data
89 mbd11 mutant thaliana 10-day-old seedling 0.68 >More info 0.41 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
90 CLO 4mM 0.61 >More info 0.48 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
91 root callus inducing medium 12 h -0.73 >More info -0.36 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
92 Selenate (root) 0.57 >More info 0.52 >More info Ws (root) Original data GEO bulk
93 Root Selenate 0.57 >More info 0.52 >More info Root control 40 micromolar selenate Root Original data GEO bulk
94 Leafminer damaged seedlings 0.52 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
95 root stele 40 mM NaCls 0.56 >More info 0.52 >More info root stele Original data GEO bulk
96 Fenclorim 4hr 0.58 >More info 0.50 >More info Acetone 4hr root Original data GEO bulk
97 DFPM 0.62 >More info 0.46 >More info control Original data GEO bulk
98 root callus inducing medium 48 h -0.71 >More info -0.37 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
99 flu over-tAPX 0.57 >More info 0.51 >More info WT Col Original data GEO bulk
100 Col in Pi deficiency medium 0.57 >More info 0.50 >More info Col in control medium root Original data GEO bulk
101 pmr5 0.60 >More info 0.47 >More info Col-0 Original data GEO bulk
102 4d red light grown hmr-5 seedlings 0.60 >More info 0.47 >More info 4d red light grown WT(Col-0) seedlings Original data
103 inhibitor A Treated 0.49 >More info 0.58 >More info Negative Control Original data GEO bulk
104 WT+chitooctaose 0.49 >More info 0.58 >More info WT+water chitooctaose seedlings Original data GEO bulk
105 pho1 0.54 >More info 0.52 >More info Col2WT Original data GEO bulk
106 WT (Col) glucose -0.55 >More info -0.51 >More info WT (Col) glucose seedlings Original data GEO bulk
107 24h +Pi -0.68 >More info -0.38 >More info 24h -Pi root Original data GEO bulk
108 root cells epidermis 140mM NaCl 48 hours 0.53 >More info 0.53 >More info root cells epidermis standard 1 hour root cells epidermis Original data
109 SA 4mM 0.55 >More info 0.51 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
110 15m.KCl 0.53 >More info 0.53 >More info To. KCl 14 day old Roots Original data GEO bulk
111 IAA/inhibitor B Treated 0.41 >More info 0.65 >More info IAA Treated Original data GEO bulk
112 Heat shock optimum 0.41 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
113 root Dosed gold 0.56 >More info 0.49 >More info root No gold .125 mM gold 24 h roots Original data
114 0.125 mM gold 24 h 0.56 >More info 0.49 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
115 Col-0 (t-zeatin 3 h) -0.61 >More info -0.44 >More info Col-0 Original data Cytokinin treatment of seedlings
116 S15-118 0.57 >More info 0.48 >More info wt Original data GEO bulk
117 mbd4 mutant thaliana 10-day-old seedling 0.69 >More info 0.35 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
118 seedlings protease IV 0.65 >More info 0.39 >More info seedlings nontreated control whole seedling Original data
119 SAM SE 35S:AGL15 0.68 >More info 0.36 >More info SAM SE Col Original data GEO bulk
120 oas-a1.1 root -0.59 >More info -0.45 >More info WT-Untreated Root Original data GEO bulk
121 seedlings-week-old RECA1-overexpressing
transgenic		 0.63 >More info 0.41 >More info seedlings-week-old Col-0 seedlings Original data
122 plant (tga2-5-6) 4h phytoprostane A1 0.38 >More info 0.66 >More info plant (tga2-5-6) 4h control Original data GEO bulk
123 ptpks2 -0.45 >More info -0.59 >More info Col-WT leaves Original data GEO bulk
124 whole roots 140 mM NaCl 1 hour 0.47 >More info 0.57 >More info whole roots standard Original data GEO bulk
125 35S::MBF1c 0.55 >More info 0.48 >More info control Original data GEO bulk
126 2hr continuous KNO3 PrR cell 0.50 >More info 0.53 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
127 6h +Pi -0.53 >More info -0.50 >More info 6h -Pi root Original data GEO bulk
128 root - 04% oxygen - 48h 0.25 >More info 0.78 >More info root - 21% oxygen - 48h Original data GEO bulk
129 WT H2O2 3h 0.46 >More info 0.57 >More info WT water 3h 3h_H2O2 Original data GEO bulk
130 whole roots -Fe 72 hour 0.51 >More info 0.51 >More info whole roots standard Original data GEO bulk
131 Mutant arf2-6 -0.66 >More info -0.36 >More info Col Original data GEO bulk
132 Fe starvation 72 h 0.51 >More info 0.51 >More info Control Original data GEO bulk
133 low CO2 + dark 0.53 >More info 0.49 >More info normal CO2 + light Original data GEO bulk
134 estradiole-induced ANAC092 -0.45 >More info -0.57 >More info transgenic (empty vector inducible system) Original data GEO bulk
135 12m.KCl 0.46 >More info 0.56 >More info To. KCl 14 day old Roots Original data GEO bulk
136 ein3 eil1 JA 0.48 >More info 0.54 >More info JA Whole seedling Original data GEO bulk
137 WT drought 0.37 >More info 0.65 >More info WT control All aerial tissue Original data GEO bulk
138 WT 30μM arsenate 8 hours. 0.45 >More info 0.57 >More info WT control (not supplemented). Original data
139 WT 2-4h Xanthomonas 0.53 >More info 0.48 >More info WT T0 Original data GEO bulk
140 bak1-3 +Pep2 10h 0.51 >More info 0.50 >More info WT +Pep2 10h Pep2 Original data GEO bulk
141 root callus inducing medium 96 h -0.66 >More info -0.35 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
142 Col BTH 0.34 >More info 0.67 >More info Col rosettes Original data GEO bulk
143 3x(p) 0.40 >More info 0.61 >More info 2x two week old seedlings Original data
144 NJ15 0.37 >More info 0.64 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
145 P.p 10.5hai 0.72 >More info 0.28 >More info At-Control roots Original data GEO bulk
146 SA 0.44 >More info 0.56 >More info WT mock Whole seedling Original data GEO bulk
147 root protoplasts 40 mM NaCl 0.47 >More info 0.53 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
148 Fenclorim 24hr 0.61 >More info 0.38 >More info Acetone 24hr root Original data GEO bulk
149 WT 1wk -P 0.58 >More info 0.41 >More info WT 1wk +P No phosphate medium seedlings without roots Original data GEO bulk
150 max4 hypocotyl 0.57 >More info 0.42 >More info wt hypocotyl hypocotyl Original data GEO bulk
151 cngc4 0.53 >More info 0.46 >More info Ws-2 Seedlings Original data GEO bulk
152 upf3 0.57 >More info 0.42 >More info WT whole plant Original data GEO bulk
153 Whole root - low pH 12H 0.42 >More info 0.57 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
154 pepr1-1 Pepr2-3 +Pep2 2h -0.46 >More info -0.53 >More info WT +Pep2 2h Pep2 Original data GEO bulk
155 RRE2 Chitin 0.61 >More info 0.37 >More info Chitin Original data GEO bulk
156 ein3 eil1 0.58 >More info 0.40 >More info Col-0 mock Whole seedling Original data GEO bulk
157 9m.KCl 0.54 >More info 0.44 >More info To. KCl 14 day old Roots Original data GEO bulk
158 whole roots -Fe 48 hour 0.50 >More info 0.48 >More info whole roots standard Original data GEO bulk
159 R. solani AG8 0.52 >More info 0.46 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
160 5-Triiodobenzoic acid3 h 0.31 >More info 0.67 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
161 Protoplast Induced 0.30 >More info 0.68 >More info Uninduced Original data GEO bulk
162 miR393 0h -0.44 >More info -0.54 >More info WT 0h Leaf tissue Original data GEO bulk
163 SAM SE agl15 agl18 double mutant 0.47 >More info 0.51 >More info SAM SE Col Original data GEO bulk
164 4C 2h(SOIL) 0.30 >More info 0.68 >More info 4C 0h(SOIL) Original data GEO bulk
165 35S:PCO1 hypoxia -0.42 >More info -0.56 >More info WT hypoxia whole rosette Original data
166 IXB induced 0.53 >More info 0.44 >More info Methanol IXB Suspension cells Original data GEO bulk
167 PNO8 3 h 0.56 >More info 0.41 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
168 IAA 0.5 h 0.46 >More info 0.51 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
169 ex1 flu dark 8hours/30 minute light 0.30 >More info 0.67 >More info col dark 8hours/30 minute light Original data GEO bulk
170 myb61 xylem 0.45 >More info 0.52 >More info wt xylem xylem Original data GEO bulk
171 dorn1-1 Root 100 mM ATP 30 min -0.42 >More info -0.55 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
172 coi1-2 0.40 >More info 0.56 >More info Col-0 mock Whole seedling Original data GEO bulk
173 P.p 30hai 0.64 >More info 0.32 >More info At-Control roots Original data GEO bulk
174 leaf blade in D 0.57 >More info 0.39 >More info leaf blade in WL leaf blades Original data GEO bulk
175 dicamba 0.46 >More info 0.50 >More info WT mock whole seedling Original data GEO bulk
176 bak1-3 +Pep2 2h 0.41 >More info 0.55 >More info WT +Pep2 2h Pep2 Original data GEO bulk
177 mbd6 mutant thaliana 10-day-old seedling 0.73 >More info 0.22 >More info WT thaliana 10-day-old seedling 10 days old seedling Original data
178 col-5 DC3000 12h 0.59 >More info 0.36 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
179 Tsu-1 -Fe 24h 0.44 >More info 0.51 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
180 Tsu -Fe 24h Roots 0.44 >More info 0.51 >More info Tsu +Fe 24h Roots Original data GEO bulk
181 mdh -0.45 >More info -0.50 >More info Col Original data GEO bulk
182 Laer pretreat GA+JA Flg22 0h 0.56 >More info 0.38 >More info Laer pretreat water control leaf discs Original data GEO bulk
183 root cells cortex 140mM NaCl 48 hours 0.54 >More info 0.40 >More info root cells cortex standard 1 hour root cells cortex Original data
184 Seedling KUA1-IOX est 0.61 >More info 0.33 >More info Seedling KUA1-IOX mock Original data
185 agb1 gpa1 -ABA LF 0.50 >More info 0.44 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
186 Col-0 9 hpi A. brassicicola 0.61 >More info 0.33 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
187 Cor 10h 0.65 >More info 0.29 >More info Mock 10h Cor Original data GEO bulk
188 ARR22-ox (t-zeatin 3 h) 0.62 >More info 0.32 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
189 upf1 0.44 >More info 0.50 >More info WT whole plant Original data GEO bulk
190 QK HS 0.43 >More info 0.51 >More info QK control heat shocked seedling Original data GEO bulk
191 WT 3H Cold 0.23 >More info 0.71 >More info WT control Original data GEO bulk
192 root cells cortex 140mM NaCl 20 hours 0.54 >More info 0.39 >More info root cells cortex standard 1 hour root cells cortex Original data
193 Col-0 under 4 days salt 0.59 >More info 0.34 >More info Col-0 under control 4 days salt treatment rosette Original data
194 CMV-WT 0.57 >More info 0.36 >More info Mock-At Aerial tissues Original data GEO bulk
195 RRE1 Chitin 0.59 >More info 0.34 >More info Chitin Original data GEO bulk
196 ani1 T16 -0.63 >More info -0.30 >More info WT T16 root tissue Original data GEO bulk
197 35S:RPS4 eds1-2 8h -0.57 >More info -0.36 >More info 35S:RPS4 8h leaves Original data
198 gh3.5D uninoculated -0.63 >More info -0.30 >More info Col-0 48 hpi Original data GEO bulk
199 Col ozone 3h 0.43 >More info 0.50 >More info Col clean-air 3h ozone Original data GEO bulk
200 Leaf wounded 0.33 >More info 0.60 >More info Leaf control vegetative leaf Original data GEO bulk
201 M6PR transgenic 0mM NaCl 0.56 >More info 0.36 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
202 WT flg22 2h 0.52 >More info 0.40 >More info WT 0h Leaf tissue Original data GEO bulk
203 Osmotic Stress 24 h (root) 0.54 >More info 0.38 >More info Stress mock 24 h (root) Original data Stress treatments
204 siliques AtHb1 control 0.40 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
205 anac017-1 H2O2 3h -0.53 >More info -0.38 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
206 root cells cortex 140mM NaCl 8 hours 0.53 >More info 0.38 >More info root cells cortex standard 1 hour root cells cortex Original data
207 WT 6H Cold 0.36 >More info 0.55 >More info WT control Original data GEO bulk
208 sid2-2 9 hpi A. brassicicola 0.54 >More info 0.36 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
209 npr1-1 SA -0.61 >More info -0.29 >More info Col-0 SA complete seedling Original data
210 ago4-1 0.58 >More info 0.32 >More info WT La-er whole plants Original data GEO bulk
211 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.63 >More info -0.26 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
212 edr1 18 h powdery mildew 0.61 >More info 0.28 >More info Col-0 18 h powdery mildew Original data GEO bulk
213 K starvation (root) 0.38 >More info 0.51 >More info Ws (root) Original data GEO bulk
214 dark-hs 0.39 >More info 0.50 >More info dark-control seedling Original data
215 wavy 0.51 >More info 0.37 >More info WT Original data GEO bulk
216 tor mutant glucose 0.52 >More info 0.36 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
217 opr3 OPDA 0.5 h 0.38 >More info 0.50 >More info opr3 0 h Original data GEO bulk
218 Root -K 0.38 >More info 0.50 >More info Control-root Original data GEO bulk
219 Cocultivation 8 hrs root 0.38 >More info 0.50 >More info Mock cocultivation 8 hrs root Root Original data
220 dde2-2 9 hpi A. brassicicola 0.55 >More info 0.32 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
221 Cor hrpS 10h 0.53 >More info 0.34 >More info Mock 10h Cor hrpS Original data GEO bulk
222 pip3 At2g19270 TDNA 9 0.33 >More info 0.54 >More info Col-0 whole plant Original data GEO bulk
223 DC3000 7h 0.52 >More info 0.35 >More info Mock 7h DC3000 Original data GEO bulk
224 gun5 control 0.60 >More info 0.27 >More info Col-0 control Original data GEO bulk
225 C58 3hpi 0.50 >More info 0.37 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
226 Whole root - low pH 3H 0.37 >More info 0.50 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
227 WT-Dry 0.27 >More info 0.60 >More info WT-CK dehydration treatment 1h Original data
228 Col-0 35S:MBS1 HL 3h -0.56 >More info -0.30 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
229 Col-0 V. longisporum-inoculated 48 hpi 0.56 >More info 0.30 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
230 col-5 hrpA 12h 0.56 >More info 0.30 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
231 ckh1 CK25 0.55 >More info 0.31 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
232 til1-1 22C 0.34 >More info 0.52 >More info Col-0 22C Original data GEO bulk
233 1h +Pi -0.32 >More info -0.54 >More info 1h -Pi root Original data GEO bulk
234 npr1 sni1 ssn2 SA -0.51 >More info -0.35 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
235 Dark 6h ivd 0.58 >More info 0.28 >More info 0h ivd Original data
236 S58-2 0.57 >More info 0.29 >More info wt Original data GEO bulk
237 cs26 long day 0.55 >More info 0.30 >More info Leaves-WT-LD leaf Original data GEO bulk
238 amiRAP aerobic -0.34 >More info -0.51 >More info WT aerobic aerobic Original data GEO bulk
239 SOS1 0mM NaCl 0.61 >More info 0.24 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
240 8 hr ammonium 0.61 >More info 0.24 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
241 Dark 3day ivd 0.53 >More info 0.31 >More info 0h ivd Original data
242 gpa1 -ABA LF 0.56 >More info 0.28 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
243 tbf1-mock infiltration -0.52 >More info -0.32 >More info WT-mock infiltration water for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
244 rosette Dark Wounded 0.53 >More info 0.30 >More info rosette Dark Control Original data GEO bulk
245 Leafminer locally damaged thaliana seedlings 0.52 >More info 0.31 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
246 S14-150 0.50 >More info 0.33 >More info wt Original data GEO bulk
247 pnp1-1 1wk +P 0.55 >More info 0.28 >More info WT 1wk +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
248 P35S:rGRF3 0.63 >More info 0.20 >More info WS Original data GEO bulk
249 upb1-1 elongation zone -0.17 >More info -0.66 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
250 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.60 >More info 0.23 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
251 Mutant cry1 -0.61 >More info -0.22 >More info Col-0 Original data GEO bulk
252 cry1 low light -0.61 >More info -0.22 >More info Col-O low light Original data GEO bulk
253 Laer pretreat GA Flg22 1h 0.12 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
254 UV Stress 24 h (shoot) 0.51 >More info 0.31 >More info Stress mock 24 h (shoot) Original data Stress treatments
255 atgsnor1-1 -0.32 >More info -0.50 >More info Col-0-untreated-control untreated leaf tissue Original data GEO bulk
256 sex1-3 0.31 >More info 0.51 >More info Col-WT leaves Original data GEO bulk
257 Kas-1 -Fe 24h -0.31 >More info -0.51 >More info Kas-1 +Fe 24h roots Original data GEO bulk
258 Kas -Fe 24h Roots -0.31 >More info -0.51 >More info Kas +Fe 24h Roots Original data GEO bulk
259 Col-0 ozone 0.60 >More info 0.22 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
260 edr1 36 h powdery mildew 0.57 >More info 0.25 >More info Col-0 36 h powdery mildew Original data GEO bulk
261 downy mildew cotyledons late stage 0.54 >More info 0.27 >More info mock inoculated Cotyledons Original data GEO bulk
262 coi1-16 ein2 sid2 ctrl -0.63 >More info -0.18 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
263 Col-0 C2H4 24h 0.52 >More info 0.29 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
264 dense canopy 0.30 >More info 0.51 >More info single (control) petiole Original data GEO bulk
265 abi1 hypocotyl 0.26 >More info 0.55 >More info Ler hypocotyl hypocotyl Original data GEO bulk
266 ataf1-1 mutant Col-0 Bgh inoculated 0.58 >More info 0.23 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
267 GO5; 0h switch to ambient CO2 concentrations; -0.55 >More info -0.25 >More info WT; 0h switch to ambient CO2 concentrations; 2 whole rosettes Original data
268 Ws 100mM NaCl 0.54 >More info 0.26 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
269 Ws leaf 100mM NaCl 0.54 >More info 0.26 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
270 35S:RPS4 eds1-2 24h -0.50 >More info -0.30 >More info 35S:RPS4 24h leaves Original data
271 Mature callus 0.50 >More info 0.30 >More info Young callus hypocotyls Original data GEO bulk
272 LTN008-2 aza-dc 0.50 >More info 0.30 >More info LTN012-2 Mock Original data
273 Te ozone 0.57 >More info 0.23 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
274 vte1-1 3d vernalization -0.55 >More info -0.24 >More info WT 3d vernalization Original data GEO bulk
275 Phytoprostane A1 4 h 0.22 >More info 0.57 >More info Col-0 Original data GEO bulk
276 Laer Flg22 1h 0.52 >More info 0.26 >More info Laer Control leaf discs Original data GEO bulk
277 seedlings + TSA 0.51 >More info 0.27 >More info control seedlings 10-day old whole seedling Original data GEO bulk
278 4C 1h 0.18 >More info 0.60 >More info 4C 0h Original data GEO bulk
279 Col(gl) 0mM NaCl 0.51 >More info 0.26 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
280 Col(gl) leaf 0mM NaCl 0.51 >More info 0.26 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
281 Nicotinamide-65hr 0.50 >More info 0.27 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
282 AsAKiin11 T2 0.17 >More info 0.60 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
283 cs26 short-day -0.51 >More info -0.25 >More info Leaves-WT-SD leaf Original data GEO bulk
284 JMJ24-IBM1 double knockout -0.54 >More info -0.22 >More info WT Original data GEO bulk
285 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.62 >More info 0.14 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
286 coi1-16 ein2 sid2 ozone 0.56 >More info 0.20 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
287 tZ -0.53 >More info -0.23 >More info DMSO--WT trans-zeatin roots Original data GEO bulk
288 leaf blade in FRD 0.50 >More info 0.26 >More info leaf blade in WL leaf blades Original data GEO bulk
289 IAA7mII over-expressor IAA Treated 0.07 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
290 Osmotic Stress 24 h (shoot) 0.51 >More info 0.24 >More info Stress mock 24 h (shoot) Original data Stress treatments
291 CAX1/CAX3 mutant 0.53 >More info 0.22 >More info Col whole plant Original data GEO bulk
292 pad4-PsmES4326-24hpi -0.50 >More info -0.24 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
293 phyABDE Rc50 -0.56 >More info -0.18 >More info phyABDE Dark red light whole seedling Original data GEO bulk
294 pvip1 pvip2 0.53 >More info 0.21 >More info Col-0 whole rosettes Original data GEO bulk
295 atr mock 0.50 >More info 0.24 >More info WT mock shoot apical meristem Original data
296 AvrRpt2 Col-0 6hpi 0.52 >More info 0.21 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
297 hni9 low nitrogen -0.50 >More info -0.23 >More info WT low nitrogen roots Original data GEO bulk
298 Hypoxic prt6 0.53 >More info 0.20 >More info Hypoxic Col-0 hypoxic conditions seedlings Original data GEO bulk
299 C24 ozone 0.57 >More info 0.16 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
300 tbf1-elf18 -0.51 >More info -0.22 >More info WT-elf18 10 µM elf18 for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
301 Mutant iaa17-6 (IAA) 0.53 >More info 0.20 >More info Col (IAA) Original data GEO bulk
302 ckh1 CK0 0.50 >More info 0.22 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
303 CT101 ozone 0.57 >More info 0.15 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
304 elevated CO2 high Mg root -0.50 >More info -0.22 >More info atmospheric CO2 high Mg root Root Original data
305 Nicotinamide-89hr 0.50 >More info 0.22 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
306 Apex mir-3TCP 14DAS -0.51 >More info -0.21 >More info Apex Col 14DAS Original data GEO bulk
307 whole roots -Fe 6 hour 0.10 >More info 0.62 >More info whole roots standard Original data GEO bulk
308 seedlings +5AC 0.50 >More info 0.21 >More info control seedlings 10-day old whole seedling Original data GEO bulk
309 Col-0 48 hpi 0.53 >More info 0.18 >More info Col-0 uninoculated Original data GEO bulk
310 elevated CO2 low Mg root -0.53 >More info -0.18 >More info atmospheric CO2 low Mg root Root Original data
311 4x 0.57 >More info 0.14 >More info 2x two week old seedlings Original data
312 Mutant cry1 (High Light) -0.50 >More info -0.20 >More info Col-0 (High Light) Original data GEO bulk
313 albino Ds13-2198-1 -0.52 >More info -0.18 >More info control Original data GEO bulk
314 siliques WT hypoxia 0.69 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
315 IRP1-OE-Fe--shoot 0.57 >More info 0.13 >More info COL-0-Fe--shoot shoot Original data
316 Elevated CO2 AMPLE N DAY 0.52 >More info 0.18 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
317 cry1 high light -0.50 >More info -0.20 >More info Col-O high light Original data GEO bulk
318 Cs root -0.19 >More info -0.51 >More info control root Original data GEO bulk
319 shoot control pRBCS 0.51 >More info 0.18 >More info shoot control total Original data GEO bulk
320 Laer Flg22+GA 1h 0.50 >More info 0.19 >More info Laer Control leaf discs Original data GEO bulk
321 cat2-2; 8h switch to ambient CO2 concentrations; 0.07 >More info 0.62 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
322 root longitudinal zone-3 low sulfur -0.50 >More info -0.17 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
323 arr10 arr12 -0.52 >More info -0.15 >More info DMSO--WT DMSO roots Original data GEO bulk
324 PRR5-VP 12h light on -0.55 >More info -0.12 >More info WT 12h light on whole plant Original data GEO bulk
325 rcf1-1 cold 0h 0.50 >More info 0.17 >More info WT cold 0h Control seedlings Original data GEO bulk
326 Shoot -P 0.16 >More info 0.51 >More info Shoot Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
327 bri1-116 -0.07 >More info 0.73 >More info Col seedling Original data GEO bulk
328 Light 3day wt -0.50 >More info -0.15 >More info 0h wt Original data
329 seed germinating in countinuous light 24h SL -0.02 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
330 ckh2 CK0 0.52 >More info 0.12 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
331 vte2 leaves 48h LT 0.51 >More info 0.13 >More info Col leaves 48h LT 48h 9-11th adult leaves Original data
332 penta MeJA 1h 0.56 >More info 0.07 >More info Laer MeJA 1h leaf discs Original data GEO bulk
333 nbp35-3/- 0.07 >More info 0.56 >More info WT whole seedling Original data GEO bulk
334 msh1 albino 0.51 >More info 0.12 >More info WT aerial part Original data GEO bulk
335 MG132 3 h 0.10 >More info 0.53 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
336 Red/FR Light45min -0.06 >More info 0.67 >More info FarRed Light 45min Original data Light treatments
337 seedling 24h after HZE WT 0.50 >More info 0.11 >More info seedling day 2 unirradiated WT 24h Original data
338 ubc13A-es -0.59 >More info -0.02 >More info Col-es root Original data GEO bulk
339 GST-overexpression seedlings control 0.52 >More info 0.08 >More info WT seedlings control Seedlings Original data
340 myb50 xylem 0.55 >More info 0.04 >More info wt xylem xylem Original data GEO bulk
341 toc1-1-53hr 0.07 >More info 0.52 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
342 afb3-1 2h KCl -0.51 >More info -0.07 >More info Ws 2h KCl 2 hours of 5 mM KCl Arabidopsis root Original data GEO bulk
343 tt4 UV 0.52 >More info 0.06 >More info UV aerial region Original data GEO bulk
344 Chemically -0.03 >More info 0.60 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
345 seedling 3h after HZE WT 0.53 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
346 gpa1-4/agb1-2 ozone 2d -0.04 >More info -0.51 >More info Col ozone 2d ozone Original data GEO bulk
347 35SAvr -0.02 >More info 0.56 >More info Ecotype Col Original data GEO bulk
348 cpctry 0.04 >More info 0.50 >More info Col Original data GEO bulk
349 toc1-1-85hr -0.06 >More info 0.59 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
350 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
351 iron minus 24h -0.54 >More info 0.02 >More info iron +24h root Original data GEO bulk
352 Col-0 24hpi A. brassicicola 0.50 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
353 root - 08% oxygen - 48h -0.06 >More info 0.58 >More info root - 21% oxygen - 48h Original data GEO bulk
354 HairpinZ 4 h (leaf) 0.53 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
355 Dry pre-dawn 0.01 >More info -0.50 >More info Wet pre-dawn water-limited whole rosette Original data GEO bulk
356 Shoot apex inflorescence (after bolting) -0.19 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
357 root longitudinal zone-2 -Fe -0.09 >More info 0.54 >More info root longitudinal zone-2 standard Original data GEO bulk
358 P. infestans 6 h (leaf) 0.58 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
359 Whole root - low pH 48H 0.15 >More info -0.55 >More info Whole root - Std pH 48H pH 4.6 for 48 hr Original data GEO bulk
360 Col PSTDC3000 24h 0.52 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
361 4d red light grown hmr-22 seedlings 0.58 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
362 0h hml 0.31 >More info -0.60 >More info 0h wt Original data