4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on 3x(m)
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List of experiments correlated with "3x(m)"  Help Download transcriptome of top 30
Score Experiment Correlation from
3x(m)		 Correlation to
3x(m)		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 3x(m) 1.00 >More info 1.00 >More info 2x two week old seedlings Original data
2 3x(p) 0.90 >More info 0.87 >More info 2x two week old seedlings Original data
3 INA 0.87 >More info 0.67 >More info CK INA seedling Original data
4 4x 0.68 >More info 0.82 >More info 2x two week old seedlings Original data
5 camta3-2 0.78 >More info 0.67 >More info WT Original data GEO bulk
6 30m light -0.65 >More info -0.80 >More info before light whole seedlings Original data GEO bulk
7 wavy 0.76 >More info 0.69 >More info WT Original data GEO bulk
8 tetraploid 0.75 >More info 0.66 >More info diploid Original data GEO bulk
9 1 h Light Total RNA -0.73 >More info -0.68 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
10 2hr transitory KNO3 PrR cell 0.74 >More info 0.67 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
11 4C 1h 0.76 >More info 0.62 >More info 4C 0h Original data GEO bulk
12 triploid female excess -0.77 >More info -0.57 >More info tetraploid Original data GEO bulk
13 UV Stress 24 h (shoot) 0.76 >More info 0.57 >More info Stress mock 24 h (shoot) Original data Stress treatments
14 WT drought 0.80 >More info 0.52 >More info WT control All aerial tissue Original data GEO bulk
15 24h volatiles Sp. HRO-C48 0.83 >More info 0.49 >More info 24h untreated whole seedling Original data GEO bulk
16 shoot-10 μM DEX- 12 hr 0.76 >More info 0.55 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
17 sid2-1 cold -0.66 >More info -0.62 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
18 pip3 At2g19270 TDNA 9 0.66 >More info 0.61 >More info Col-0 whole plant Original data GEO bulk
19 shoot-10 μM DEX- 24hr 0.75 >More info 0.52 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
20 opr3 JA 0.5 h 0.70 >More info 0.56 >More info opr3 0 h Original data GEO bulk
21 A. thaliana-A. lyrata hybrid -0.73 >More info -0.53 >More info A. thaliana mature leaves before flowering Original data GEO bulk
22 shoot-10 μM DEX- 6 hr 0.75 >More info 0.50 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
23 mutant acs6E (single mutant) -0.69 >More info -0.54 >More info col control (single mutant) Original data GEO bulk
24 siliques AtHb1 control 0.70 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
25 OsRLCK253 expressing -0.74 >More info -0.47 >More info WT seedlings Original data GEO bulk
26 Heat shock optimum 0.55 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
27 pmr5 pmr6 0.70 >More info 0.50 >More info Col-0 Original data GEO bulk
28 Col-0 2HS 0.81 >More info 0.37 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
29 abi1 hypocotyl 0.61 >More info 0.56 >More info Ler hypocotyl hypocotyl Original data GEO bulk
30 pmr5 0.71 >More info 0.46 >More info Col-0 Original data GEO bulk
31 penta mutant (higher order mutant) 0.77 >More info 0.40 >More info col control (higher order mutant) Original data GEO bulk
32 Col(gl) 0mM NaCl 0.68 >More info 0.48 >More info Col 0mM NaCl 0mM NaCl leaf Original data GEO bulk
33 vtc2 (I) 0.63 >More info 0.53 >More info Col (I) rosette Original data GEO bulk
34 Col(gl) leaf 0mM NaCl 0.68 >More info 0.48 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
35 flu dark 8hours/30 minute light 0.74 >More info 0.41 >More info col dark 8hours/30 minute light Original data GEO bulk
36 1 h Light IP RNA -0.62 >More info -0.52 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
37 miR mutant (higher order mutant) 0.78 >More info 0.36 >More info col control (higher order mutant) Original data GEO bulk
38 anti-sense for AtAOX1a 0.80 >More info 0.33 >More info WT Original data GEO bulk
39 WT (Col-0) inflorescence drought day 4 0.81 >More info 0.32 >More info WT (Col-0) inflorescence well-watered day 4 Unopen flower buds Original data GEO bulk
40 M6PR transgenic leaf 0mM NaCl 0.68 >More info 0.45 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
41 camta3-1 0.62 >More info 0.51 >More info WT Original data GEO bulk
42 sfr6 drought -0.77 >More info -0.36 >More info WT drought All aerial tissue Original data GEO bulk
43 triplod male excess -0.72 >More info -0.41 >More info tetraploid Original data GEO bulk
44 OsSAP11 expressing -0.62 >More info -0.51 >More info WT seedlings Original data GEO bulk
45 HARAP aerobic -0.57 >More info -0.55 >More info WT aerobic aerobic Original data GEO bulk
46 Col whole leaf 1dpi -0.62 >More info -0.50 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
47 vtc2 mature somatic embryo 0.67 >More info 0.44 >More info WT mature somatic embryo mature somatic embryo Original data GEO bulk
48 Night Time Treatment -0.59 >More info -0.52 >More info Night Time Control 1hr white light pulse aerial rosette Original data
49 CMV-A2b mutant 0.71 >More info 0.40 >More info Mock-At Aerial tissues Original data GEO bulk
50 BLM+INA 0.71 >More info 0.40 >More info CK BLM and INA seedling Original data
51 FLIGHT TAGESB plate6 SHOOTS 0.71 >More info 0.40 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
52 Col leaf 100mM NaCl 0.70 >More info 0.40 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
53 Col leaf 100mM NaCl 0.70 >More info 0.40 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
54 Col 100mM NaCl 0.70 >More info 0.40 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
55 10min Reillumination Total RNA -0.59 >More info -0.51 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
56 oligomycin 1 h 0.67 >More info 0.43 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
57 leaf blade in FRD 0.73 >More info 0.37 >More info leaf blade in WL leaf blades Original data GEO bulk
58 xyl-grown cell culture- 1h 1mM Suc -0.44 >More info -0.66 >More info xyl-grown cell culture- 1h 1mM Xyl cell culture Original data
59 WT 30μM arsenate 8 hours. 0.64 >More info 0.45 >More info WT control (not supplemented). Original data
60 Whole root - S 12H -0.67 >More info -0.42 >More info Whole root - S 0H Original data GEO bulk
61 WT NAA 1h 0.60 >More info 0.49 >More info WT 0h Leaf tissue Original data GEO bulk
62 SA 0.73 >More info 0.36 >More info WT mock Whole seedling Original data GEO bulk
63 Mutant iaa5_6_19 -0.69 >More info -0.40 >More info Col Original data GEO bulk
64 WT 3H Cold 0.78 >More info 0.30 >More info WT control Original data GEO bulk
65 M6PR transgenic 0mM NaCl 0.66 >More info 0.42 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
66 SOS1 0mM NaCl 0.68 >More info 0.40 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
67 FLIGHT TAGES 2B plate6 HYPOCOTYLS 0.71 >More info 0.37 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
68 Col0-PsmES4326-24hpi 0.47 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
69 phr1 Root-Pi 0.76 >More info 0.31 >More info WT Root+Pi roots Original data GEO bulk
70 WT NAA 2h 0.66 >More info 0.41 >More info WT 0h Leaf tissue Original data GEO bulk
71 60m light -0.39 >More info -0.68 >More info before light whole seedlings Original data GEO bulk
72 +1.6 mM Tween 20 1 h. 0.59 >More info 0.48 >More info +distilled water 1 h. Original data GEO bulk
73 cs26 long day 0.64 >More info 0.42 >More info Leaves-WT-LD leaf Original data GEO bulk
74 A. lyrata -0.69 >More info -0.37 >More info A. thaliana mature leaves before flowering Original data GEO bulk
75 mutant acs2B (single mutant) -0.69 >More info -0.37 >More info col control (single mutant) Original data GEO bulk
76 rsa3-1 Na 24h 0.44 >More info 0.62 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
77 sex4-3 0.60 >More info 0.45 >More info Col-WT leaves Original data GEO bulk
78 Col-0 (t-zeatin 3 h) -0.72 >More info -0.33 >More info Col-0 Original data Cytokinin treatment of seedlings
79 low CO2 + light 0.69 >More info 0.36 >More info normal CO2 + light Original data GEO bulk
80 iron minus 6 h -0.47 >More info -0.58 >More info iron +6 h root Original data GEO bulk
81 NahG -0.36 >More info -0.69 >More info Col-0 Leaves Original data GEO bulk
82 Col-0 RNAi-MBS2/mbs1-1 HL 3h -0.68 >More info -0.36 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
83 AtMinD1 Prolonged-induction 0.75 >More info 0.29 >More info Control whole plant Original data GEO bulk
84 oas-a1.1 root -0.65 >More info -0.39 >More info WT-Untreated Root Original data GEO bulk
85 leaf blade in D 0.65 >More info 0.39 >More info leaf blade in WL leaf blades Original data GEO bulk
86 Rose Bengal 0.5 uM 0.47 >More info 0.57 >More info Control RB and PER Rose Bengal Original data
87 camta2/3 warm 0.64 >More info 0.38 >More info WT warm entire aerial part Original data GEO bulk
88 petiole in FRD 0.66 >More info 0.36 >More info petiole in WL petioles Original data GEO bulk
89 seedling h S Exp -0.63 >More info -0.39 >More info seedling -S Exp seedling Original data
90 npr1 sni1 brca2a SA -0.66 >More info -0.36 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
91 Col-0 INA 48h 0.43 >More info 0.59 >More info Col-0 MOCK 48h Original data GEO bulk
92 Col in Pi deficiency medium 0.73 >More info 0.28 >More info Col in control medium root Original data GEO bulk
93 WT+H2O2 0.68 >More info 0.33 >More info WT H2O2 Original data GEO bulk
94 sex1-3 0.76 >More info 0.25 >More info Col-WT leaves Original data GEO bulk
95 camta1/3 warm 0.64 >More info 0.37 >More info WT warm entire aerial part Original data GEO bulk
96 2 hr Hypoxia Total RNA 0.77 >More info 0.24 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
97 Col-0 mbs1-1 HL 3h -0.60 >More info -0.41 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
98 Mutant coi1(leaf) -0.59 >More info -0.42 >More info Col-0 (leaf) Original data GEO bulk
99 pmr5 0.63 >More info 0.38 >More info Col-0 rosette Original data GEO bulk
100 A. halleri highZn-root -0.67 >More info -0.34 >More info A. petraea highZn-root Original data GEO bulk
101 Col -Fe -0.57 >More info -0.43 >More info Col-es root Original data GEO bulk
102 Ws 100mM NaCl 0.71 >More info 0.29 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
103 35S:RPS4 eds1-2 2h -0.62 >More info -0.38 >More info 35S:RPS4 2h leaves Original data
104 rdr1-1 -0.61 >More info -0.39 >More info Col-0 Original data GEO bulk
105 Ws leaf 100mM NaCl 0.71 >More info 0.29 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
106 Red Light 45min 0.60 >More info 0.40 >More info White Light 45min Original data Light treatments
107 npr1 sni1 SA 0.56 >More info 0.44 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
108 seedling -S Exp 0.51 >More info 0.49 >More info seedling FN Exp seedling Original data
109 WT Na2S -0.57 >More info -0.42 >More info WT water Na2S leaf Original data GEO bulk
110 Homozygous-AtcesA6 -0.68 >More info -0.31 >More info Heterozygous-AtcesA6 rosette Original data GEO bulk
111 SAM SE 35S:AGL15 0.70 >More info 0.29 >More info SAM SE Col Original data GEO bulk
112 Col-0 SA 0.69 >More info 0.30 >More info Col-0 Original data GEO bulk
113 Heat 6h-recover 48h 0.73 >More info 0.26 >More info Heat 6h rosettes - 5 leaves stage Original data
114 pepr1-1 Pepr2-3 untreated -0.71 >More info -0.28 >More info WT untreated untreated Original data GEO bulk
115 Mutant NahG(leaf) -0.46 >More info -0.53 >More info Col-0 (leaf) Original data GEO bulk
116 CLO 4mM 0.57 >More info 0.41 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
117 plant (tga2-5-6) 4h phytoprostane A1 0.58 >More info 0.40 >More info plant (tga2-5-6) 4h control Original data GEO bulk
118 hepta mutant (higher order mutant) 0.67 >More info 0.31 >More info col control (higher order mutant) Original data GEO bulk
119 low CO2 + dark 0.67 >More info 0.31 >More info normal CO2 + light Original data GEO bulk
120 Col-0 DCA 48h 0.41 >More info 0.57 >More info Col-0 MOCK 48h Original data GEO bulk
121 pho1 0.59 >More info 0.38 >More info Col2WT Original data GEO bulk
122 SAM SE agl15 agl18 double mutant 0.73 >More info 0.24 >More info SAM SE Col Original data GEO bulk
123 seedlings protease IV 0.60 >More info 0.37 >More info seedlings nontreated control whole seedling Original data
124 1h +Pi -0.66 >More info -0.31 >More info 1h -Pi root Original data GEO bulk
125 sng1 0.62 >More info 0.35 >More info WT aerial region Original data GEO bulk
126 eds16 whole leaf 3dpi -0.38 >More info -0.59 >More info Col whole leaf 3dpi whole leaf Original data GEO bulk
127 Leafminer damaged seedlings 0.41 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
128 Heat 6h -0.76 >More info -0.20 >More info At mock rosettes - 5 leaves stage Original data
129 ms35 silique stage 5 -0.85 >More info -0.11 >More info Ler .5 anther and filament Original data GEO bulk
130 Whole root - S 24H -0.69 >More info -0.27 >More info Whole root - S 0H Original data GEO bulk
131 15m light -0.60 >More info -0.36 >More info before light whole seedlings Original data GEO bulk
132 opr3 OPDA 0.5 h 0.51 >More info 0.45 >More info opr3 0 h Original data GEO bulk
133 WT+chitooctaose 0.58 >More info 0.38 >More info WT+water chitooctaose seedlings Original data GEO bulk
134 Shoot apex inflorescence (after bolting) 0.31 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
135 2 hr Hypoxia IP RNA 0.77 >More info 0.18 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
136 Atwrky63 -0.74 >More info -0.21 >More info Col0 none leaf Original data GEO bulk
137 calcicole ecotype Cal-0 0.82 >More info 0.13 >More info Col-4 1 mM CaCl2 Original data GEO bulk
138 root cells cortex -Fe 0.69 >More info 0.26 >More info whole roots standard Original data GEO bulk
139 46T-Dry 0.51 >More info 0.44 >More info WT-Dry dehydration treatment 1h Original data
140 hog1-7 -0.64 >More info -0.31 >More info wt whole seedling Original data GEO bulk
141 mutant-line774 -0.64 >More info -0.31 >More info WT-control whole plant Original data GEO bulk
142 proline -0.66 >More info -0.28 >More info noneHS Original data GEO bulk
143 Col-0 35S:MBS1 HL 3h -0.74 >More info -0.20 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
144 noa1-2 0.69 >More info 0.25 >More info Col-0 whole seedlings Original data GEO bulk
145 Col ozone 3h 0.53 >More info 0.41 >More info Col clean-air 3h ozone Original data GEO bulk
146 bHLH122 ox -0.56 >More info -0.37 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
147 seedlings-week-old RECA1-overexpressing
transgenic		 0.65 >More info 0.28 >More info seedlings-week-old Col-0 seedlings Original data
148 IMI 4mM 0.65 >More info 0.28 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
149 eds16 whole leaf 0h UI -0.37 >More info -0.56 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
150 seed germinating in countinuous light 24h SL 0.26 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
151 2hr continuous KNO3 PrR cell 0.72 >More info 0.21 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
152 downy mildew cotyledons late stage 0.58 >More info 0.35 >More info mock inoculated Cotyledons Original data GEO bulk
153 9 hr Hypoxia Total RNA 0.69 >More info 0.24 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
154 EBE-XVE +estradiol -0.54 >More info -0.38 >More info WT-Col-0 +estradiol shoot Original data GEO bulk
155 AvrRpm1 2 h (leaf) 0.63 >More info 0.29 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
156 WT 2-4h Xanthomonas 0.59 >More info 0.33 >More info WT T0 Original data GEO bulk
157 mutant acs4A (single mutant) -0.61 >More info -0.31 >More info col control (single mutant) Original data GEO bulk
158 CAX1/CAX3 mutant 0.61 >More info 0.31 >More info Col whole plant Original data GEO bulk
159 camta1/2/3 warm 0.60 >More info 0.32 >More info WT warm entire aerial part Original data GEO bulk
160 sdg8-2 mutant -0.57 >More info -0.35 >More info wild type leaf Original data GEO bulk
161 tcp13/+ tcp14/+ -0.56 >More info -0.35 >More info WT inflorescences Original data GEO bulk
162 tbf1-mock infiltration -0.51 >More info -0.40 >More info WT-mock infiltration water for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
163 axr2 -0.71 >More info -0.20 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
164 eds16 laser microdissected 5 dpi -0.61 >More info -0.30 >More info Col laser microdissected 5 dpi LMD leaf epidermal and mesophyll cells Original data GEO bulk
165 atmyc2 cop1 Seedling Dark 0.53 >More info 0.37 >More info WT Seedling Dark Original data GEO bulk
166 pip3 At2g19270 RNAi 24 -0.54 >More info -0.36 >More info Nd-1 whole plant Original data GEO bulk
167 FLIGHT TAGESB plate6 ROOTS 0.51 >More info 0.39 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
168 FLIGHT TAGESB plate 0.62 >More info 0.28 >More info GROUND CONTROL TAGESB plate Original data
169 eds16 whole leaf 5dpi -0.55 >More info -0.34 >More info Col whole leaf 5dpi whole leaf Original data GEO bulk
170 WT-16ºC -0.56 >More info -0.33 >More info WT-23ºC Original data GEO bulk
171 cys-c1 root -0.61 >More info -0.28 >More info Root-WT roots Original data GEO bulk
172 35S::MBF1c 0.64 >More info 0.25 >More info control Original data GEO bulk
173 downy mildew cotyledons early stage -0.77 >More info -0.12 >More info mock inoculated Cotyledons Original data GEO bulk
174 HARAP hypoxic 0.54 >More info 0.35 >More info hypoxic hypoxia Original data GEO bulk
175 WT (Col-0) inflorescence well-watered day 10 0.79 >More info 0.10 >More info WT (Col-0) inflorescence well-watered day 0 Unopen flower buds Original data GEO bulk
176 ABA SA 24h -0.37 >More info -0.52 >More info EtOH 24h 24hr Original data GEO bulk
177 abi4-102 (II) 0.58 >More info 0.31 >More info Col (II) rosette Original data GEO bulk
178 camta1/2/3 24h cold 0.60 >More info 0.29 >More info WT 24h cold 24h cold entire aerial part Original data GEO bulk
179 root cortex -S 0.67 >More info 0.21 >More info root cortex pH5.7 Original data GEO bulk
180 Col-0 low oxygen 0.63 >More info 0.25 >More info Col-0 control low oxygen root Original data GEO bulk
181 P.p 2.5hai 0.52 >More info 0.36 >More info At-Control roots Original data GEO bulk
182 til1-1 22C 0.65 >More info 0.23 >More info Col-0 22C Original data GEO bulk
183 TNT-seedlings 0.61 >More info 0.27 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
184 Leafminer systemically damaged thaliana seedlings 0.53 >More info 0.35 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
185 petiole in D 0.50 >More info 0.38 >More info petiole in WL petioles Original data GEO bulk
186 root cells stele -Fe 0.59 >More info 0.29 >More info whole roots standard Original data GEO bulk
187 cpr5scv1 0.29 >More info 0.59 >More info WT(COL) Original data GEO bulk
188 Shoot -P 0.62 >More info 0.25 >More info Shoot Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
189 IAA/inhibitor A Treated 0.66 >More info 0.21 >More info IAA Treated Original data GEO bulk
190 Apex BLS>>TCP4 14DAS -0.73 >More info -0.14 >More info Apex Col 14DAS Original data GEO bulk
191 essp4/sdg8-5 mutant -0.52 >More info -0.35 >More info wild type leaf Original data GEO bulk
192 6h volatiles Sm. R3089 0.62 >More info 0.25 >More info 6h untreated whole seedling Original data GEO bulk
193 1.5 hr ammonium 0.61 >More info 0.26 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
194 Dark 6h ivd 0.63 >More info 0.24 >More info 0h ivd Original data
195 Elevated CO2 AMPLE N DAY 0.35 >More info 0.52 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
196 GiantCell Root -0.66 >More info -0.20 >More info Control Root laser captured giant cells Original data GEO bulk
197 FAMA induced 48h -0.61 >More info -0.25 >More info control 48h Whole seedling Original data GEO bulk
198 ein2-1 9 hpi A. brassicicola 0.62 >More info 0.24 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
199 slr-1 2h NAA -0.74 >More info -0.12 >More info Col-0 2h NAA Original data GEO bulk
200 Laer Flg22(Agrobacterium) 1h -0.65 >More info -0.21 >More info Laer Control leaf discs Original data GEO bulk
201 Atss3 Dark4 -0.59 >More info -0.27 >More info Atss3 Dark0.5 Original data GEO bulk
202 Apex mir-3TCP 14DAS -0.69 >More info -0.17 >More info Apex Col 14DAS Original data GEO bulk
203 scl3 -0.64 >More info -0.22 >More info Col-0 whole root Original data GEO bulk
204 coi1-2 0.67 >More info 0.18 >More info Col-0 mock Whole seedling Original data GEO bulk
205 rdr2-1 -0.56 >More info -0.29 >More info Col-0 Original data GEO bulk
206 Whole root - low pH 1H 0.53 >More info 0.32 >More info Whole root - Std pH 1H pH 4.6 for 1 hr Original data GEO bulk
207 root callus inducing medium 12 h -0.72 >More info -0.13 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
208 epiF3 -0.77 >More info -0.08 >More info WT Col-0 aerial part Original data
209 GO5; harvested 8h continiously maintained in high
CO2;		 0.61 >More info 0.24 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
210 pmr4-1 powdery mildew 0.58 >More info 0.27 >More info WT powdery mildew uninoculated Original data GEO bulk
211 dicamba 0.62 >More info 0.23 >More info WT mock whole seedling Original data GEO bulk
212 long 8-degree- -0.51 >More info -0.33 >More info control long Original data GEO bulk
213 Cycloheximide 3 h 0.53 >More info 0.31 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
214 Differentiation 24h -0.66 >More info -0.18 >More info Differentiation 0h leaves Original data
215 Octopus overexpressor 35SDYG25 0.33 >More info 0.51 >More info WS Original data GEO bulk
216 Norflurazon -0.59 >More info -0.25 >More info Col-0 Original data GEO bulk
217 seedling 1.5h after HZE WT 0.61 >More info 0.23 >More info seedling day 1 unirradiated WT 1.5h Original data
218 WT Root-Pi 0.73 >More info 0.11 >More info WT Root+Pi roots Original data GEO bulk
219 pepr1-1 Pepr2-3 +Pep2 2h -0.61 >More info -0.23 >More info WT +Pep2 2h Pep2 Original data GEO bulk
220 frb1 mutant 0.71 >More info 0.13 >More info WT whole seedling Original data GEO bulk
221 FarRed Light 45min 0.70 >More info 0.14 >More info White Light 45min Original data Light treatments
222 C2H2 ZF TDNA mutant -0.75 >More info -0.09 >More info Col-WT mature pollen Original data GEO bulk
223 Norflurazon -0.59 >More info -0.25 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
224 GST 4 h (leaf) 0.60 >More info 0.24 >More info Mock 4 h (leaf) Original data Elicitor treatments
225 C58 3hpi 0.57 >More info 0.27 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
226 gpa1-4/agb1-2 clean-air 3h 0.76 >More info 0.07 >More info Col clean-air 3h clean-air Original data GEO bulk
227 bio4-1 mutant watered00µM biotin leaves -0.55 >More info -0.28 >More info bio4-1 mutant leaves leaves Original data GEO bulk
228 Col-0 C2H4 24h 0.67 >More info 0.16 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
229 Col-0 shade 0.50 >More info 0.33 >More info Col-0 light seedlings Original data GEO bulk
230 root callus inducing medium 24h -0.68 >More info -0.15 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
231 FarRed Light 4 h -0.31 >More info -0.52 >More info White Light 4 h Original data Light treatments
232 root cells endodermis and quiescent center -Fe 0.57 >More info 0.26 >More info whole roots standard Original data GEO bulk
233 chito-tetramer 0.50 >More info 0.32 >More info Col Mock Original data GEO bulk
234 npr1 sni1 ssn2 SA -0.63 >More info -0.19 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
235 Mutant siz1-3 (Drought) 0.50 >More info 0.32 >More info Col-0 (Drought) Original data GEO bulk
236 mutant-line1135 -0.67 >More info -0.15 >More info WT-control whole plant Original data GEO bulk
237 rdo3 siliques 0.62 >More info 0.20 >More info WT Ler siliques Original data GEO bulk
238 root longitudinal zone-1 -Fe -0.51 >More info -0.31 >More info root longitudinal zone-1 standard Original data GEO bulk
239 siz1-3 drought 0.50 >More info 0.32 >More info Col-0 drought Original data GEO bulk
240 ddm1-12 -0.67 >More info -0.15 >More info wt whole seedling Original data GEO bulk
241 6h volatiles Sp. HRO-C48 0.62 >More info 0.19 >More info 6h untreated whole seedling Original data GEO bulk
242 bak1-3 untreated -0.77 >More info -0.04 >More info WT untreated untreated Original data GEO bulk
243 chito-octamer 0.54 >More info 0.27 >More info Col Mock Original data GEO bulk
244 eif3h -0.62 >More info -0.19 >More info WT Original data GEO bulk
245 lib -0.52 >More info -0.29 >More info WT whole seedling Original data GEO bulk
246 root hypoxia total 0.70 >More info 0.11 >More info root control total Original data GEO bulk
247 Anoxia 0.58 >More info 0.23 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
248 rts1-5 0.60 >More info 0.21 >More info null-mutant whole plant Original data GEO bulk
249 Mutant ap3-6(shoot apex) -0.64 >More info -0.16 >More info Shoot apex inflorescence (after bolting) Original data Developmental series; organs / tissues at different ages
250 IXB induced 0.67 >More info 0.13 >More info Methanol IXB Suspension cells Original data GEO bulk
251 WT-NOCO2 INFECTED 0.52 >More info 0.28 >More info WT-MOCK Original data GEO bulk
252 Col whole leaf 6hpi 0.66 >More info 0.14 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
253 protoplasted roots pH4.6 0.53 >More info 0.27 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
254 elf3-7-16ºC -0.53 >More info -0.27 >More info WT-16ºC Original data GEO bulk
255 root - 08% oxygen - 48h -0.60 >More info -0.20 >More info root - 21% oxygen - 48h Original data GEO bulk
256 WT AntimycinA 3h 0.63 >More info 0.17 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
257 WT seedlings MV 0.54 >More info 0.25 >More info WT seedlings control Seedlings Original data GEO bulk
258 9 hr Hypoxia IP RNA 0.61 >More info 0.18 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
259 KO-nudx19 leaves 0.65 >More info 0.14 >More info WT leaves rosette leaves Original data
260 Mutant clv3-7(flower) -0.60 >More info -0.19 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
261 mutant acs1A (single mutant) -0.67 >More info -0.12 >More info col control (single mutant) Original data GEO bulk
262 Differentiation 12h -0.56 >More info -0.23 >More info Differentiation 0h leaves Original data
263 Seedling-HeatStressed POLYSOMESmRNA 0.60 >More info 0.19 >More info Seedling-control POLYSOMESmRNA seedling Original data
264 35S:RPS4 eds1-2 8h -0.53 >More info -0.26 >More info 35S:RPS4 8h leaves Original data
265 wnk8-2 untreated -0.63 >More info -0.16 >More info Col-0 untreated seedlings Original data GEO bulk
266 2hr transitory KNO3 SR cell 0.68 >More info 0.11 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
267 WT +Zn -0.63 >More info -0.16 >More info WT Control Root Original data GEO bulk
268 Seedling-HeatStressed TOTALmRNA 0.61 >More info 0.18 >More info Seedling-control TOTALmRNA seedling Original data
269 Mutant ga1-5 -0.28 >More info -0.51 >More info Ler-1 Original data Comparison of plant hormone related mutant
270 irradiated leaf (cmt 5d) 0.50 >More info 0.28 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
271 WT (Col) glucose -0.60 >More info -0.18 >More info WT (Col) glucose seedlings Original data GEO bulk
272 CMP 4hr 0.62 >More info 0.16 >More info Acetone 4hr root Original data GEO bulk
273 gun1-1 +lincomycin -0.65 >More info -0.13 >More info Col-0 +lincomycin Original data GEO bulk
274 35S::CYC 0.54 >More info 0.24 >More info thaliana control secondary inflorescence Original data
275 2hr continuous KNO3 SR cell 0.71 >More info 0.07 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
276 roottip hypoxia total 0.75 >More info 0.03 >More info roottip control total Original data GEO bulk
277 aba2 1% sucrose 12-day-old 0.51 >More info 0.27 >More info Col-7 1% sucrose 12-day-old Original data GEO bulk
278 FAMA induced 4h -0.70 >More info -0.08 >More info control 4h Whole seedling Original data GEO bulk
279 Lipopolysaccaride4 h (leaf) 0.70 >More info 0.08 >More info Mock 4 h (leaf) Original data Elicitor treatments
280 Mutant iaa17-6 -0.76 >More info -0.01 >More info Col Original data GEO bulk
281 hai1-2 low water potential 0.64 >More info 0.13 >More info low water potential low water potential stress whole seedlings Original data GEO bulk
282 4C 2h(SOIL) 0.52 >More info 0.25 >More info 4C 0h(SOIL) Original data GEO bulk
283 amiR-ETP1/2 0.61 >More info 0.16 >More info Col-0 air Original data GEO bulk
284 Whole root - S 48H -0.66 >More info -0.11 >More info Whole root - S 0H Original data GEO bulk
285 Whole root - S 72H -0.61 >More info -0.16 >More info Whole root - S 0H Original data GEO bulk
286 penta Pst DC3000 12hpi 0.67 >More info 0.10 >More info Laer Pst DC3000 12hpi leaf discs Original data GEO bulk
287 Col leaves 120h LT -0.73 >More info -0.04 >More info Col leaves 0h LT 12h 9-11th adult leaves Original data
288 IAA/inhibitor B Treated 0.59 >More info 0.18 >More info IAA Treated Original data GEO bulk
289 FHY3p dark+DEX -0.61 >More info -0.16 >More info FHY3p dark+mock Original data GEO bulk
290 wnk8-1 untreated -0.63 >More info -0.14 >More info Col-0 untreated seedlings Original data GEO bulk
291 phyB mutant 22C 10hrs -0.23 >More info -0.54 >More info L22-10hrs whole plant excluding roots Original data GEO bulk
292 Kas-1 -Fe 48h -0.50 >More info -0.26 >More info Kas-1 +Fe 24h roots Original data GEO bulk
293 Kas -Fe 48h Roots -0.50 >More info -0.26 >More info Kas +Fe 24h Roots Original data GEO bulk
294 seedling 6h after HZE WT 0.57 >More info 0.19 >More info seedling day 1 unirradiated WT 6h Original data
295 Atwrky40 -0.69 >More info -0.07 >More info Col0 none leaf Original data GEO bulk
296 dor control 0.66 >More info 0.10 >More info WT control Original data GEO bulk
297 seedling 30 min S Exp -0.50 >More info -0.26 >More info seedling -S Exp seedling Original data
298 SA 4mM 0.61 >More info 0.15 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
299 protoplasts T1 [flg22] 0.24 >More info 0.52 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
300 CBF3 0mM NaCl 0.60 >More info 0.15 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
301 WT-elf18 -0.75 >More info -0.00 >More info WT-mock infiltration 10 µM elf18 for 2 hrs (infiltration into leaves) mature leaf Original data GEO bulk
302 ebs Pool 0.59 >More info 0.16 >More info Ler Pool seedling Original data GEO bulk
303 msg2-BR -0.76 >More info 0.01 >More info BR BR dark-grown seedlings Original data GEO bulk
304 NJ15 0.57 >More info 0.18 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
305 WT salt 12 h -0.53 >More info -0.22 >More info WT salt 0 h Salt with 120 mM NaCl for 24 h seedlings Original data GEO bulk
306 pip3 At2g19270 TDNA 1 0.57 >More info 0.18 >More info Col-0 whole plant Original data GEO bulk
307 A2hsfa1-ox in quadruple mutant -0.74 >More info -0.00 >More info hsfa1 quadruple mutant whole seedling Original data GEO bulk
308 vte1-1 3d vernalization -0.55 >More info -0.19 >More info WT 3d vernalization Original data GEO bulk
309 oligomycin 4 h 0.51 >More info 0.23 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
310 express RfBP 0.70 >More info 0.04 >More info WT green part of the whole plant Original data GEO bulk
311 arf2 mock 0.59 >More info 0.15 >More info Col mock Original data GEO bulk
312 AtMinD1 Temporal-induction 0.55 >More info 0.19 >More info Control whole plant Original data GEO bulk
313 Mutant ein2(leaf) -0.54 >More info -0.20 >More info Col-0 (leaf) Original data GEO bulk
314 Col-0 wt Hypoxic 0.71 >More info 0.03 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
315 pip3 At2g19270 TDNA 6h-5 0.64 >More info 0.10 >More info Col-0 whole plant Original data GEO bulk
316 Mutant arf2 (etiol) 0.59 >More info 0.15 >More info Col (etiol) Original data GEO bulk
317 TA induced 0.70 >More info 0.04 >More info Methanol TA Suspension cells Original data GEO bulk
318 irradiated leaf (WT 5d) 0.59 >More info 0.15 >More info control leaf (WT 5d) rosette leaf only Original data GEO bulk
319 lht1 PstDC3000 48h -0.64 >More info -0.10 >More info PstDC3000 48h 48hr leaf Original data GEO bulk
320 Col-Luc WT 3h antimycin A 0.65 >More info 0.09 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
321 8 hr nitrate 0.64 >More info 0.09 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
322 shoot hypoxia total 0.76 >More info -0.03 >More info shoot control total Original data GEO bulk
323 high-R:FR bud axillary -0.50 >More info -0.23 >More info low-R:FR bud axillary high R rosette axillary bud n-2 Original data GEO bulk
324 t-zeatin 0.5 h -0.57 >More info -0.16 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
325 gul2-1 bri1-5 mutant 0.58 >More info 0.15 >More info WT 7 day-old whole seedlings Original data
326 JMJ24 knockout -0.59 >More info -0.14 >More info WT Original data GEO bulk
327 Col laser microdissected 5 dpi 0.52 >More info 0.21 >More info Col laser microdissected 5d UI LMD leaf epidermal and mesophyll cells Original data GEO bulk
328 phyB mutant 16C 4hrs 0.74 >More info -0.01 >More info 16C 4hs whole plant excluding roots Original data GEO bulk
329 sim smr1 -0.73 >More info -0.00 >More info WT seedling Original data GEO bulk
330 Dex-rga(delta17) 2h GA4 -0.63 >More info -0.10 >More info Vector 4h GA4 shoots Original data GEO bulk
331 myb3 myb3r4d 0.78 >More info -0.05 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
332 light-hs -0.62 >More info -0.11 >More info light-control seedling Original data
333 Homozygous-AtcesA4 -0.50 >More info -0.23 >More info Heterozygous-AtcesA4 rosette Original data GEO bulk
334 axr2-BR -0.59 >More info -0.14 >More info BR BR dark-grown seedlings Original data GEO bulk
335 Mutant nph4-1 -0.55 >More info -0.17 >More info Col Original data GEO bulk
336 WT (Col-0) inflorescence drought day 5 0.71 >More info 0.01 >More info WT (Col-0) inflorescence well-watered day 5 Unopen flower buds Original data GEO bulk
337 root hypoxia pPEP 0.61 >More info 0.11 >More info root hypoxia total hypoxia root Original data GEO bulk
338 opr3 OPDA 2 h 0.62 >More info 0.10 >More info opr3 0 h Original data GEO bulk
339 siliques WT hypoxia 0.71 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
340 rsl4 -0.60 >More info -0.12 >More info Col-0 Control root Original data GEO bulk
341 nhx5 0.51 >More info 0.21 >More info WT Rosette leaf Original data GEO bulk
342 AhNAS2-RNAi +Zn 0.62 >More info 0.10 >More info WT +Zn Root Original data GEO bulk
343 ex2 flu dark 8hours/30 minute light 0.64 >More info 0.08 >More info col dark 8hours/30 minute light Original data GEO bulk
344 2xX4x interploidy cross -0.62 >More info -0.10 >More info 2xX2x cross Original data GEO bulk
345 Salt Stress 24 h (root) 0.59 >More info 0.13 >More info Stress mock 24 h (root) Original data Stress treatments
346 root longitudinal zone-4 -Fe -0.09 >More info -0.63 >More info root longitudinal zone-4 standard Original data GEO bulk
347 iron minus 24h -0.22 >More info -0.50 >More info iron +24h root Original data GEO bulk
348 ddm1-2 -0.55 >More info -0.16 >More info Col-0 plant inflorescence Original data
349 Laer pretreat JA Flg22 0h -0.17 >More info -0.54 >More info Laer pretreat water control leaf discs Original data GEO bulk
350 Cd 18h root -0.62 >More info -0.09 >More info WT-Untreated Root Original data GEO bulk
351 35S:RPS4 eds1-2 24h -0.50 >More info -0.21 >More info 35S:RPS4 24h leaves Original data
352 anac017-2 AntimycinA 3h -0.60 >More info -0.11 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
353 atmospheric CO2 low Mg shoot 0.55 >More info 0.15 >More info atmospheric CO2 normal Mg shoot Shoot Original data
354 P-chlorophenoxy- isobutyric acid 3 h -0.16 >More info -0.54 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
355 CsUBC13-OE -Fe 0.61 >More info 0.09 >More info Col -Fe root Original data GEO bulk
356 2hr KCl control SR cell 0.61 >More info 0.09 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
357 ORS1 induced 0.59 >More info 0.11 >More info mock-induced rosette leaves Original data GEO bulk
358 C24 24h cold -0.57 >More info -0.13 >More info Col 24h cold leaf Original data GEO bulk
359 Cold Stress 24 h (root) 0.59 >More info 0.11 >More info Stress mock 24 h (root) Original data Stress treatments
360 Cotyledons 0.64 >More info 0.05 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
361 CabpBVR2 0.65 >More info 0.04 >More info WT Original data GEO bulk
362 Inflorescence ngaquad -0.61 >More info -0.08 >More info Inflorescence wt Original data GEO bulk
363 xrn4-5 flower -0.62 >More info -0.07 >More info Col-0 flower inflorescence Original data GEO bulk
364 WT H2O2 3h 0.57 >More info 0.12 >More info WT water 3h 3h_H2O2 Original data GEO bulk
365 gpa1 -ABA LF 0.59 >More info 0.10 >More info Col-0 -ABA LF Leaves of five week-old plants Original data GEO bulk
366 psad1-1 stn7-1 -0.59 >More info -0.10 >More info Col-0 rosette leaves Original data GEO bulk
367 rdr6-11 ein5-1 ski2-3 0.59 >More info 0.10 >More info Col-0 aerial tissue Original data
368 atmospheric CO2 low Mg root 0.63 >More info 0.06 >More info atmospheric CO2 normal Mg root Root Original data
369 Osmotic Stress 24 h (root) 0.62 >More info 0.07 >More info Stress mock 24 h (root) Original data Stress treatments
370 IAA7mII over-expressor IAA Treated -0.00 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
371 plant (tga2-5-6) 4h OPDA 0.52 >More info 0.16 >More info plant (tga2-5-6) 4h control Original data GEO bulk
372 Atss3 Dark8 -0.52 >More info -0.16 >More info Atss3 Dark0.5 Original data GEO bulk
373 aux1 mutant roots ethylene -0.52 >More info -0.16 >More info roots air Original data GEO bulk
374 ckh1 CK200 0.56 >More info 0.12 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
375 root callus inducing medium 48 h -0.64 >More info -0.04 >More info root callus inducing medium 0 h 48 hours after incubating on callus inducing medium root explants Original data GEO bulk
376 Dex-rga(delta17) 4h GA4 -0.57 >More info -0.11 >More info Vector 4h GA4 shoots Original data GEO bulk
377 HMG 0.57 >More info 0.11 >More info Control for tissue data shoot apical meristem Original data GEO bulk
378 BLM 0.67 >More info 0.00 >More info CK BLM seedling Original data
379 psad1 0.54 >More info 0.13 >More info WS rosette leaves Original data GEO bulk
380 cov1 cov2 stem Base 0.56 >More info 0.11 >More info WT stem Base stem Base Original data GEO bulk
381 Rosette leaf No2 0.62 >More info 0.05 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
382 gai Control 0.50 >More info 0.17 >More info Laer Control leaf discs Original data GEO bulk
383 whole roots 140 mM NaCl 30 minutes 0.61 >More info 0.06 >More info whole roots standard Original data GEO bulk
384 cortex 0.72 >More info -0.05 >More info Control for tissue data cortex Original data GEO bulk
385 LAS 0.58 >More info 0.09 >More info Control for tissue data shoot apical meristem Original data GEO bulk
386 des1 Na2S 0.59 >More info 0.08 >More info WT Na2S Na2S leaf Original data GEO bulk
387 Atape2 low light 0.58 >More info 0.09 >More info Control for tissue data shoot apical meristem Original data GEO bulk
388 HDG4 0.57 >More info 0.10 >More info Control for tissue data shoot apical meristem Original data GEO bulk
389 Heat and anoxia 0.51 >More info 0.15 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
390 pXVE:HA-EDM2-a untreated -0.56 >More info -0.10 >More info Col-0 untreated seedlings Original data GEO bulk
391 Expanding leaf 0.61 >More info 0.05 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
392 Lip0 UV 0.50 >More info 0.16 >More info Lip0 mock UV seedling Original data
393 spch 0.52 >More info 0.14 >More info Col-0 WT whole seedling Original data GEO bulk
394 tZ -0.53 >More info -0.13 >More info DMSO--WT trans-zeatin roots Original data GEO bulk
395 Differentiation 48h -0.63 >More info -0.03 >More info Differentiation 0h leaves Original data
396 A. halleri -0.53 >More info -0.13 >More info A. thaliana mature leaves before flowering Original data GEO bulk
397 nhx6 0.59 >More info 0.07 >More info WT Rosette leaf Original data GEO bulk
398 KAN1 0.58 >More info 0.08 >More info Control for tissue data shoot apical meristem Original data GEO bulk
399 1hr-pH4.5 0.60 >More info 0.06 >More info 1hr-pH6 1hr pH 4.5 roots Original data GEO bulk
400 sid2 -0.54 >More info -0.11 >More info Col rosettes Original data GEO bulk
401 ice1 3H Cold -0.50 >More info -0.15 >More info WT 3H Cold Original data GEO bulk
402 ms35 silique stage 9.10 -0.67 >More info 0.02 >More info Ler 8.9.10 anther and filament Original data GEO bulk
403 tfl1-1-23ºC 0.76 >More info -0.11 >More info WT-23ºC Original data GEO bulk
404 Dex-rga(delta17) 2h GA4+DEX -0.60 >More info -0.05 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
405 aox1a:rpoTmp untreated 0.61 >More info 0.04 >More info WT(Col0) untreated (control aox1a:rpoTmp) leaf Original data
406 IPT8 induced 24h 0.54 >More info 0.11 >More info Control 24h 24 hours primary root tip (5 mm) Original data GEO bulk
407 ex1 flu dark 8hours/30 minute light 0.59 >More info 0.06 >More info col dark 8hours/30 minute light Original data GEO bulk
408 SPT4-R3 seedlings0 DAS -0.57 >More info -0.08 >More info Col-0 seedlings0 DAS seedlings Original data
409 mature endodermis glcal 0.65 >More info -0.01 >More info Control for tissue data endodermis Original data GEO bulk
410 Dex-rga(delta17) 4h GA4+DEX -0.53 >More info -0.11 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
411 Distal half (leaf7) 0.59 >More info 0.05 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
412 elevated CO2 normal Mg root 0.65 >More info -0.01 >More info atmospheric CO2 normal Mg root Root Original data
413 mutant acs2C (single mutant) -0.51 >More info -0.13 >More info col control (single mutant) Original data GEO bulk
414 wnk8-3 untreated -0.59 >More info -0.05 >More info Col-0 untreated seedlings Original data GEO bulk
415 Dark 3day ivd 0.60 >More info 0.04 >More info 0h ivd Original data
416 root callus inducing medium 96 h -0.68 >More info 0.04 >More info root callus inducing medium 0 h 96 hours after incubating on callus inducing medium root explants Original data GEO bulk
417 atsf1-2 mutant seedling -0.73 >More info 0.09 >More info Col-0 seedling seedlings Original data
418 Mutant tga2_5_6 0.13 >More info 0.51 >More info Col-0 Original data GEO bulk
419 plant (tga2-5-6) 4h control 0.13 >More info 0.51 >More info plant (Col-0) 4h control Original data GEO bulk
420 differentiating xylem 0.69 >More info -0.05 >More info Control for tissue data xylem Original data GEO bulk
421 AtHB8 0.57 >More info 0.07 >More info Control for tissue data shoot apical meristem Original data GEO bulk
422 tor mutant glucose 0.69 >More info -0.05 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
423 WT Shoot Hypoxia 0.69 >More info -0.05 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
424 Laer pretreat GA Flg22 1h -0.07 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
425 Infected Col-0 leaf -0.56 >More info -0.07 >More info Mock Col-0 leaf F. oxysporum leaf Original data GEO bulk
426 Shoot apex vegetative &Young leaves 0.56 >More info 0.07 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
427 root hypoxia pSHR 0.55 >More info 0.08 >More info root hypoxia total hypoxia root Original data GEO bulk
428 Proximalhalf (leaf7) 0.58 >More info 0.05 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
429 Differentiation 36h -0.64 >More info 0.01 >More info Differentiation 0h leaves Original data
430 rosette Light Wounded 0.63 >More info 0.00 >More info rosette Light Control Original data GEO bulk
431 6xX2x interploidy cross 0.57 >More info 0.06 >More info 2xX2x cross Original data GEO bulk
432 seedling 6h after Gamma atm-1 0.55 >More info 0.07 >More info seedling day 1 unirradiated atm-1 6h Original data
433 ACC 0.5 h -0.55 >More info -0.07 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
434 Phaseolicola 2 h (leaf) 0.50 >More info 0.12 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
435 msh1 stunt 0.66 >More info -0.04 >More info WT Col-0 above ground part of plant Original data GEO bulk
436 toc1-1-65hr 0.51 >More info 0.11 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
437 root hypoxia pWOL 0.54 >More info 0.08 >More info root hypoxia total hypoxia root Original data GEO bulk
438 A. halleri highZn-leaf -0.59 >More info -0.03 >More info A. petraea highZn-leaf Original data GEO bulk
439 detached inflorescences 24h 0.67 >More info -0.05 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
440 Col-0 low oxygen 0.58 >More info 0.04 >More info Col-0 Original data GEO bulk
441 brm-1 -0.59 >More info -0.03 >More info wt shoots Original data GEO bulk
442 Senescing leaf 0.59 >More info 0.03 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
443 S17 0.58 >More info 0.04 >More info Control for tissue data shoot apical meristem Original data GEO bulk
444 Petiol (leaf7) 0.56 >More info 0.05 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
445 WT seedlings NaCl 0.56 >More info 0.05 >More info WT seedlings control Seedlings Original data GEO bulk
446 Dark 3day wt 0.54 >More info 0.07 >More info 0h wt Original data
447 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.50 >More info 0.11 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
448 mil4 -0.52 >More info -0.09 >More info Col rosettes Original data GEO bulk
449 Mutant arf2-6 -0.62 >More info 0.01 >More info Col Original data GEO bulk
450 phloem sieve cells and companion cells 0.64 >More info -0.03 >More info Control for tissue data phloem Original data GEO bulk
451 nrpe1 -0.87 >More info 0.26 >More info WT Original data
452 AAF-OX 0.59 >More info 0.02 >More info Col-0 Rosette leaf Original data GEO bulk
453 ga1-3 1h GA4 -0.62 >More info 0.01 >More info ga1-3 1h water shoots Original data GEO bulk
454 Cauline leaves 0.59 >More info 0.02 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
455 Control KNO3 roots - 8hours 0.55 >More info 0.05 >More info Control KCl roots - 8hours 5mM KNO3 on both sides for 8 hours roots Original data GEO bulk
456 roottip control pWOL 0.53 >More info 0.07 >More info roottip control total control roottip Original data GEO bulk
457 Petals stage15 0.60 >More info 0.00 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
458 iron minus 0 h 0.50 >More info 0.10 >More info iron +0 h root Original data GEO bulk
459 Stamen stage15 0.59 >More info 0.01 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
460 root - 04% oxygen - 48h -0.57 >More info -0.03 >More info root - 21% oxygen - 48h Original data GEO bulk
461 cat2-2; harvested 8h continiously maintained in
high CO2;		 -0.57 >More info -0.03 >More info WT; harvested 8h continiously maintained in high
CO2;		 2 whole rosettes Original data
462 columella control 0.55 >More info 0.04 >More info Control for tissue data mock columella Original data GEO bulk
463 upf3 0.52 >More info 0.07 >More info WT whole plant Original data GEO bulk
464 Dark 1day wt 0.55 >More info 0.04 >More info 0h wt Original data
465 Mutant axr3-1 (IAA) 0.61 >More info -0.02 >More info Col (IAA) Original data GEO bulk
466 seedling 3h after HZE WT 0.57 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
467 Leaf 0.51 >More info 0.07 >More info Control for tissue data leaf Original data GEO bulk
468 1.5 hr nitrate 0.55 >More info 0.03 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
469 seedling 6h after HZE atm-1 0.53 >More info 0.05 >More info seedling day 1 unirradiated atm-1 6h Original data
470 L17 phyA line -0.51 >More info -0.07 >More info WT seedling Original data GEO bulk
471 Ler 20C long-day 0.58 >More info -0.00 >More info Ler 20C short-day seeds Original data GEO bulk
472 WT Shoot-Pi 0.69 >More info -0.11 >More info WT Shoot+Pi shoots Original data GEO bulk
473 wrky72-2-MOCK 0.53 >More info 0.04 >More info WT-MOCK Original data GEO bulk
474 Flowers stage15 0.52 >More info 0.05 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
475 pad4-PsmES4326-24hpi -0.54 >More info -0.03 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
476 Col-0 9 hpi A. brassicicola 0.53 >More info 0.04 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
477 lht1 untreated -0.54 >More info -0.03 >More info WT untreated untreated leaf Original data GEO bulk
478 Laer GA 1h -0.67 >More info 0.10 >More info Laer Control leaf discs Original data GEO bulk
479 Sepals stage15 0.57 >More info -0.00 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
480 whole roots 140 mM NaCl 1 hour 0.54 >More info 0.02 >More info whole roots standard Original data GEO bulk
481 in vivo pollen tube 0.50 >More info 0.06 >More info Control for tissue data pollen tube Original data GEO bulk
482 shoot hypoxia pCER5 0.54 >More info 0.02 >More info shoot hypoxia total Original data GEO bulk
483 Hypocotyl 0.55 >More info 0.01 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
484 AFB1 PSTDC3000 24h 0.50 >More info 0.06 >More info Col PSTDC3000 24h Leaf Original data GEO bulk
485 QC 0.56 >More info -0.00 >More info Control for tissue data FACS-sorted protoplasts from roots Original data
486 root hypoxia pCO2 0.56 >More info -0.00 >More info root hypoxia total hypoxia root Original data GEO bulk
487 ERF96OE 0.51 >More info 0.05 >More info WT leaf Original data
488 K starvation (root) 0.53 >More info 0.03 >More info Ws (root) Original data GEO bulk
489 sav1-1 shade 0.55 >More info 0.01 >More info Col-0 shade seedlings Original data GEO bulk
490 ga1-3 -0.61 >More info 0.06 >More info wt shoots Original data GEO bulk
491 cys-c1 leaf 0.53 >More info 0.02 >More info Leaf-WT leaves Original data GEO bulk
492 phyABDE Rc50 -0.50 >More info -0.05 >More info phyABDE Dark red light whole seedling Original data GEO bulk
493 cpr5 sim smr1 -0.73 >More info 0.18 >More info WT seedling Original data GEO bulk
494 Root -K 0.53 >More info 0.02 >More info Control-root Original data GEO bulk
495 rdr6-15 -0.55 >More info 0.00 >More info Col-0 Original data GEO bulk
496 Tsu-1 -Fe 48h 0.01 >More info -0.56 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
497 Tsu -Fe 48h Roots 0.01 >More info -0.56 >More info Tsu +Fe 24h Roots Original data GEO bulk
498 sid2-avrB-6h 0.70 >More info -0.15 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
499 cat2-short-day 2d 0.59 >More info -0.04 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
500 arp6-10 2h 27 -degree-C -0.51 >More info -0.03 >More info Col-0 2h at 27 ºC whole seedlings Original data GEO bulk
501 rao1-1 0.53 >More info 0.01 >More info Col-Luc WT mock water control treatment 3 hours whole green tissue Original data GEO bulk
502 ddm1-2 rdr6-15 -0.66 >More info 0.12 >More info Col-0 plant inflorescence Original data
503 Starch sheath 2 days NAA 0.53 >More info 0.01 >More info Starch sheath T0 Stem starch sheath under NAA in vitro treatment before cell divission laser capture microdissection Original data GEO bulk
504 Constans-mutant -0.70 >More info 0.16 >More info Col control above-ground whole plant Original data GEO bulk
505 Wounding Stress3 h (root) 0.50 >More info 0.03 >More info Stress mock 3 h (root) Original data Stress treatments
506 bri1-5 mutant 0.51 >More info 0.02 >More info WT 7 day-old whole seedlings Original data
507 rosette leaves fdh 0.71 >More info -0.18 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
508 CCA1-ox 6am non-polysomal 0.02 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
509 Fenclorim 4hr 0.60 >More info -0.08 >More info Acetone 4hr root Original data GEO bulk
510 vte2 leaves 0h LT -0.53 >More info 0.01 >More info Col leaves 0h LT h 9-11th adult leaves Original data
511 bZIP TDNA mutant -0.59 >More info 0.07 >More info Col-WT mature pollen Original data GEO bulk
512 GO5; 8h switch to ambient CO2 concentrations; 0.64 >More info -0.12 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
513 epidermis control 0.57 >More info -0.05 >More info Control for tissue data mock epidermis Original data GEO bulk
514 0.2µM SMX -0.54 >More info 0.03 >More info control Whole seedling Original data GEO bulk
515 MIL4 ox -0.63 >More info 0.12 >More info Col Original data GEO bulk
516 WT Bc inoculation 14h 0.50 >More info 0.00 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
517 Stem 2ndinternode 0.50 >More info -0.00 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
518 UV 0.62 >More info -0.12 >More info WT aerial region Original data GEO bulk
519 rao2 water 3h 0.59 >More info -0.09 >More info WT water 3h 3h_water Original data GEO bulk
520 short 17-degree- 0.22 >More info -0.72 >More info control short Original data GEO bulk
521 Uniconazole 12 h 0.56 >More info -0.07 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
522 6-trichlorophenoxyacetic acid 3 h 0.07 >More info -0.56 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
523 brat1nrpe1 -0.59 >More info 0.10 >More info WT Original data
524 mil4 sid2 -0.54 >More info 0.06 >More info Col rosettes Original data GEO bulk
525 rdr6-11 0.54 >More info -0.06 >More info Col-0 aerial tissue Original data
526 shoot control pRBCS 0.64 >More info -0.16 >More info shoot control total Original data GEO bulk
527 pericycle control 0.50 >More info -0.02 >More info Control for tissue data mock pericycle Original data GEO bulk
528 HairpinZ 4 h (leaf) 0.51 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
529 mpk6-ko H2O 4h 0.59 >More info -0.11 >More info Col-0 H2O 4h Original data GEO bulk
530 Brz220 12 h -0.58 >More info 0.10 >More info Mock 12 h Original data Effect of brassinosteroid inhibitors on seedlings
531 35S::LFY 0.50 >More info -0.02 >More info Landsberg erecta seedlings Original data GEO bulk
532 rosette leaves lcr 0.64 >More info -0.16 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
533 cov1 cov2 stem Top -0.63 >More info 0.15 >More info WT stem Top stem Top Original data GEO bulk
534 WT Nitrate 0.5h 0.56 >More info -0.09 >More info WT untreated Original data GEO bulk
535 Osmotic Stress 24 h (shoot) 0.61 >More info -0.14 >More info Stress mock 24 h (shoot) Original data Stress treatments
536 Col-0 under 4 days salt 0.50 >More info -0.03 >More info Col-0 under control 4 days salt treatment rosette Original data
537 shoot control pCER5 0.50 >More info -0.03 >More info shoot control total Original data GEO bulk
538 short 12-degree- 0.28 >More info -0.75 >More info control short Original data GEO bulk
539 WT Root Hypoxia 0.52 >More info -0.06 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
540 ms1 unpollinated 0.58 >More info -0.12 >More info WT 8h-pollinated pistil Original data GEO bulk
541 ACN1-2 Sucrose -0.54 >More info 0.09 >More info Col-7 Sucrose Original data GEO bulk
542 Sha-3h IAA -0.66 >More info 0.21 >More info Sha-0h IAA whole plant Original data GEO bulk
543 PAHs stress -0.55 >More info 0.10 >More info exp control phenanthrene whole plants Original data GEO bulk
544 bak1-3 +Pep2 10h 0.59 >More info -0.14 >More info WT +Pep2 10h Pep2 Original data GEO bulk
545 shoot control pGL2 0.70 >More info -0.25 >More info shoot control total Original data GEO bulk
546 2h KNO3 Whole root 0.54 >More info -0.10 >More info 2h KCl control Whole root Whole root Original data GEO bulk
547 2hr continuous KNO3 EPR cell 0.63 >More info -0.19 >More info 2hr KCl control EPR cell Endodermis&Pericycle root cells Original data GEO bulk
548 rao1-2 3h antimycin A 0.54 >More info -0.11 >More info Col-Luc WT 3h antimycin A 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
549 gapcp1gapcp2 0.51 >More info -0.08 >More info WT Original data GEO bulk
550 pif4pif5 mut 1h FR -0.54 >More info 0.12 >More info WT 1h FR Original data GEO bulk
551 Nicotinamide-65hr 0.54 >More info -0.12 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
552 bri1-116 -0.31 >More info 0.73 >More info Col seedling Original data GEO bulk
553 S5 0.50 >More info -0.10 >More info WT Original data GEO bulk
554 Mutant ap2-6(flower) -0.53 >More info 0.13 >More info Flowers stage12 Original data Developmental series; organs / tissues at different ages
555 4d red light grown hmr-22 seedlings 0.61 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
556 sfr6 control -0.62 >More info 0.22 >More info WT control All aerial tissue Original data GEO bulk
557 Sha-30min IAA -0.56 >More info 0.16 >More info Sha-0h IAA whole plant Original data GEO bulk
558 Leaf wounded 0.50 >More info -0.10 >More info Leaf control vegetative leaf Original data GEO bulk
559 nia1nia2noa1-2 0.55 >More info -0.15 >More info Col-0 whole seedlings Original data GEO bulk
560 PNO8 3 h 0.10 >More info -0.50 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
561 Col light-dark EtOH 0.60 >More info -0.20 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
562 roottip control pSHR 0.57 >More info -0.17 >More info roottip control total control roottip Original data GEO bulk
563 low R/FR mock spray -0.51 >More info 0.13 >More info high R/FR mock spray low R/FR mock spray Original data GEO bulk
564 Elevated CO2 expanding leaf 0.57 >More info -0.19 >More info Ambient CO2 expanding leaf expanding leaf Original data
565 Nicotinamide-61hr 0.50 >More info -0.13 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
566 hai1-2 0.52 >More info -0.15 >More info control control whole seedlings Original data GEO bulk
567 elf3-7-23ºC -0.51 >More info 0.14 >More info WT-23ºC Original data GEO bulk
568 dde2-2 9 hpi A. brassicicola 0.54 >More info -0.18 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
569 Sha-1h IAA -0.55 >More info 0.19 >More info Sha-0h IAA whole plant Original data GEO bulk
570 Roots Cd -0.61 >More info 0.25 >More info Roots control Cd Root Original data GEO bulk
571 tga2 tga5 tga6 ctrl -0.50 >More info 0.14 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) control Original data
572 root longitudinal zone-3 -Fe 0.25 >More info -0.61 >More info root longitudinal zone-3 standard Original data GEO bulk
573 LTN014-2 aza-dc+TSA 0.65 >More info -0.31 >More info LTN012-2 Mock Original data
574 Split KNO3 roots - 2hours 0.51 >More info -0.17 >More info Split KCl roots - 2hours 5mM KNO3 on ONE side for 2 hours roots Original data GEO bulk
575 Got7 UV -0.23 >More info 0.56 >More info Got7 mock UV seedling Original data
576 MIL4 ox BTH -0.53 >More info 0.21 >More info Col BTH Original data GEO bulk
577 Col BTH -0.37 >More info 0.67 >More info Col rosettes Original data GEO bulk
578 cat2-short-day 4d 0.55 >More info -0.26 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
579 Time-0 chr11-1chr17-1 0.59 >More info -0.32 >More info Time-0 Col-0 leaf explants Original data
580 aox1a(line) MLD stressed 0.54 >More info -0.31 >More info WT(Col0) MLD stressed (control aox1a) leaf Original data
581 phr1 phl1 Root-Pi 0.53 >More info -0.30 >More info WT Shoot+Pi roots Original data GEO bulk
582 penta MeJA 1h 0.50 >More info -0.27 >More info Laer MeJA 1h leaf discs Original data GEO bulk
583 35S:MYB28 like miR -0.34 >More info 0.55 >More info WT for miR Original data GEO bulk
584 2hr continuous KNO3 ECR cell 0.53 >More info -0.33 >More info 2hr KCl control ECR cell Epidermis&Cortex root cells Original data GEO bulk
585 atmyc2 Seedling BL 0.53 >More info -0.34 >More info WT Seedling BL Original data GEO bulk
586 WT roots - Fe 0.56 >More info -0.38 >More info WT roots + Fe Roots Original data GEO bulk
587 35:SUB1C 0.51 >More info -0.35 >More info WT whole seedling Original data GEO bulk
588 atgsnor1-3-avrB-6h 0.52 >More info -0.36 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
589 ARR22-ox -0.59 >More info 0.48 >More info Col-0 Original data Cytokinin treatment of seedlings
590 E.orontii Infection 3 day -0.45 >More info 0.53 >More info Uninfection 3 day Original data Elicitor treatments