4.0:Analysis result - correlation network
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Module-based correlation network(MCN) centered on bbx24 in Simulated Shade
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List of experiments correlated with "bbx24 in Simulated Shade"  Help Download transcriptome of top 30
Score Experiment Correlation from
bbx24 in Simulated Shade		 Correlation to
bbx24 in Simulated Shade		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 bbx24 in Simulated Shade 1.00 >More info 1.00 >More info WT in simulated shade shade seedling Original data
2 5-Triiodobenzoic acid3 h -0.75 >More info -0.79 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
3 inhibitor B Treated -0.73 >More info -0.79 >More info Negative Control Original data GEO bulk
4 Chemically -0.70 >More info -0.81 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
5 root Dosed gold -0.71 >More info -0.75 >More info root No gold .125 mM gold 24 h roots Original data
6 0.125 mM gold 24 h -0.71 >More info -0.75 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
7 phr1 Shoot-Pi -0.81 >More info -0.64 >More info WT Root-Pi shoots Original data GEO bulk
8 toc1-1-85hr -0.67 >More info -0.74 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
9 IAA/inhibitor B Treated -0.68 >More info -0.71 >More info IAA Treated Original data GEO bulk
10 Col-0 low oxygen -0.70 >More info -0.68 >More info Col-0 control low oxygen root Original data GEO bulk
11 AgNO3 3 h -0.55 >More info -0.83 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
12 toc1-1-81hr -0.63 >More info -0.73 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
13 Phytoprostane A1 4 h -0.59 >More info -0.76 >More info Col-0 Original data GEO bulk
14 hira-root 0.71 >More info 0.64 >More info WT-root root Original data
15 root cells epidermis 140mM NaCl 3 hours -0.73 >More info -0.60 >More info root cells epidermis standard 1 hour root cells epidermis Original data
16 root cells cortex 140mM NaCl 48 hours -0.76 >More info -0.56 >More info root cells cortex standard 1 hour root cells cortex Original data
17 TNT-seedlings -0.50 >More info -0.82 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
18 Whole root - S 3H -0.73 >More info -0.59 >More info Whole root - S 0H Original data GEO bulk
19 root cells epidermis 140mM NaCl 48 hours -0.71 >More info -0.60 >More info root cells epidermis standard 1 hour root cells epidermis Original data
20 WT 30μM arsenate 8 hours. -0.63 >More info -0.68 >More info WT control (not supplemented). Original data
21 Mutant axr3-1 (IAA) -0.61 >More info -0.66 >More info Col (IAA) Original data GEO bulk
22 root cells endodermis 140mM NaCl 3 hours -0.73 >More info -0.54 >More info root cells endodermis standard 1 hour root cells endodermis Original data
23 SA -0.60 >More info -0.66 >More info WT mock Whole seedling Original data GEO bulk
24 phr1 phl1 Root-Pi 0.76 >More info 0.50 >More info WT Shoot+Pi roots Original data GEO bulk
25 AtLysM RLK1 mutant water -0.72 >More info -0.53 >More info WT water Original data GEO bulk
26 P.p 30hai -0.64 >More info -0.61 >More info At-Control roots Original data GEO bulk
27 root cells stele 140mM NaCl 3 hours -0.71 >More info -0.54 >More info root cells stele standard 1 hour root cells stele Original data
28 root cells epidermis 140mM NaCl 32 hours -0.71 >More info -0.53 >More info root cells epidermis standard 1 hour root cells epidermis Original data
29 root cells endodermis 140mM NaCl 48 hours -0.67 >More info -0.57 >More info root cells endodermis standard 1 hour root cells endodermis Original data
30 R. solani AG8 -0.46 >More info -0.78 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
31 whole roots -Fe 72 hour -0.64 >More info -0.59 >More info whole roots standard Original data GEO bulk
32 root cells epidermis 140mM NaCl 20 hours -0.74 >More info -0.49 >More info root cells epidermis standard 1 hour root cells epidermis Original data
33 WT-16ºC 0.59 >More info 0.64 >More info WT-23ºC Original data GEO bulk
34 Fe starvation 72 h -0.64 >More info -0.59 >More info Control Original data GEO bulk
35 plant (Col-0) 4h phytoprostane A1 -0.61 >More info -0.62 >More info plant (tga2-5-6) 4h control Original data GEO bulk
36 root cells cortex 140mM NaCl 32 hours -0.73 >More info -0.49 >More info root cells cortex standard 1 hour root cells cortex Original data
37 root cells cortex 140mM NaCl 3 hours -0.70 >More info -0.52 >More info root cells cortex standard 1 hour root cells cortex Original data
38 root cells cortex 140mM NaCl 8 hours -0.69 >More info -0.53 >More info root cells cortex standard 1 hour root cells cortex Original data
39 root epidermis and lateral root cap pH4.6 -0.61 >More info -0.61 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
40 plant (tga2-5-6) 4h phytoprostane A1 -0.48 >More info -0.74 >More info plant (tga2-5-6) 4h control Original data GEO bulk
41 Selenate (root) -0.68 >More info -0.53 >More info Ws (root) Original data GEO bulk
42 Root Selenate -0.68 >More info -0.53 >More info Root control 40 micromolar selenate Root Original data GEO bulk
43 Cocultivation 8 hrs root -0.53 >More info -0.67 >More info Mock cocultivation 8 hrs root Root Original data
44 root cells epidermis 140mM NaCl 8 hours -0.70 >More info -0.50 >More info root cells epidermis standard 1 hour root cells epidermis Original data
45 P.p 6hai -0.56 >More info -0.63 >More info At-Control roots Original data GEO bulk
46 epidermis auxin -0.63 >More info -0.56 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
47 root cells cortex 140mM NaCl 20 hours -0.66 >More info -0.53 >More info root cells cortex standard 1 hour root cells cortex Original data
48 root control pGL2 -0.64 >More info -0.55 >More info root control total control root Original data GEO bulk
49 R. solani AG2-1 -0.48 >More info -0.71 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
50 Mutant axr3-1 -0.64 >More info -0.54 >More info Col Original data GEO bulk
51 root cells endodermis 140mM NaCl 8 hours -0.71 >More info -0.47 >More info root cells endodermis standard 1 hour root cells endodermis Original data
52 Chitosan 3h Treatment -0.59 >More info -0.59 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
53 9m.KCl -0.65 >More info -0.52 >More info To. KCl 14 day old Roots Original data GEO bulk
54 mp-B4149 mutant IAA -0.65 >More info -0.52 >More info GR-bdl IAA Original data GEO bulk
55 root cells endodermis 140mM NaCl 1 hour -0.66 >More info -0.50 >More info root cells endodermis standard 1 hour root cells endodermis Original data
56 Ibuprofen 3 h -0.60 >More info -0.56 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
57 OXUPB1-2 meristematic zone -0.59 >More info -0.57 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
58 CeO2 germinant 0.47 >More info 0.69 >More info Millipore Water germinant CeO2 seedling Original data
59 root cells stele 140mM NaCl 8 hours -0.68 >More info -0.47 >More info root cells stele standard 1 hour root cells stele Original data
60 Root -Cs -0.64 >More info -0.51 >More info Control-root Original data GEO bulk
61 rhd2 -0.66 >More info -0.49 >More info WT Small excised segments of primary root tissue corresponding to root-hair elongation zone Original data GEO bulk
62 root stele pH4.6 -0.55 >More info -0.60 >More info root stele pH5.7 Original data GEO bulk
63 Whole root - low pH 12H -0.50 >More info -0.65 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
64 cpctry -0.51 >More info -0.64 >More info Col Original data GEO bulk
65 whole roots -Fe 48 hour -0.58 >More info -0.56 >More info whole roots standard Original data GEO bulk
66 root cells endodermis 140mM NaCl 32 hours -0.61 >More info -0.52 >More info root cells endodermis standard 1 hour root cells endodermis Original data
67 Col-0 Root 100 mM ATP 30 min -0.64 >More info -0.48 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
68 root cells stele 140mM NaCl 48 hours -0.67 >More info -0.44 >More info root cells stele standard 1 hour root cells stele Original data
69 ABA control -0.39 >More info -0.72 >More info No ABA control Original data GEO bulk
70 afb3-1 2h KNO3 -0.51 >More info -0.59 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
71 upb1-1 elongation zone 0.56 >More info 0.54 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
72 P.p 10.5hai -0.48 >More info -0.62 >More info At-Control roots Original data GEO bulk
73 NJ15 -0.40 >More info -0.70 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
74 root cells epidermis 140mM NaCl 1 hour -0.63 >More info -0.46 >More info root cells epidermis standard 1 hour root cells epidermis Original data
75 root hypoxia pGL2 -0.59 >More info -0.50 >More info root hypoxia total hypoxia root Original data GEO bulk
76 DUO1 induced 24h -0.57 >More info -0.52 >More info 24hr-not-induced whole plant Original data GEO bulk
77 root cells stele 140mM NaCl 1 hour -0.58 >More info -0.51 >More info root cells stele standard 1 hour root cells stele Original data
78 root cells stele 140mM NaCl 32 hours -0.66 >More info -0.42 >More info root cells stele standard 1 hour root cells stele Original data
79 root cells cortex 140mM NaCl 1 hour -0.53 >More info -0.55 >More info root cells cortex standard 1 hour root cells cortex Original data
80 root cells endodermis and quiescent center -Fe -0.63 >More info -0.44 >More info whole roots standard Original data GEO bulk
81 toc1-1-73hr -0.43 >More info -0.64 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
82 6h +Pi 0.41 >More info 0.66 >More info 6h -Pi root Original data GEO bulk
83 root cells endodermis 140mM NaCl 20 hours -0.59 >More info -0.48 >More info root cells endodermis standard 1 hour root cells endodermis Original data
84 dicamba -0.47 >More info -0.60 >More info WT mock whole seedling Original data GEO bulk
85 Mutant nph4-1_arf19-1 -0.72 >More info -0.34 >More info Col Original data GEO bulk
86 root control pWOL -0.65 >More info -0.41 >More info root control total control root Original data GEO bulk
87 embryo ABA -0.57 >More info -0.49 >More info embryo-control ABA embryo Original data GEO bulk
88 toc1-1-57hr -0.46 >More info -0.60 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
89 Whole root - low pH 48H 0.46 >More info 0.60 >More info Whole root - Std pH 48H pH 4.6 for 48 hr Original data GEO bulk
90 columella auxin -0.45 >More info -0.61 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
91 P.p 2.5hai -0.43 >More info -0.62 >More info At-Control roots Original data GEO bulk
92 whole roots 140 mM NaCl 1 hour -0.46 >More info -0.59 >More info whole roots standard Original data GEO bulk
93 Control KNO3 roots - 8hours -0.62 >More info -0.42 >More info Control KCl roots - 8hours 5mM KNO3 on both sides for 8 hours roots Original data GEO bulk
94 plant (Col-0) 4h OPDA -0.62 >More info -0.42 >More info plant (Col-0) 4h control Original data GEO bulk
95 Col-0 wt Hypoxic -0.59 >More info -0.45 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
96 OPDA 4 h -0.62 >More info -0.42 >More info Col-0 Original data GEO bulk
97 FLIGHT TAGESB plate6 ROOTS -0.69 >More info -0.35 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
98 root cortex pH4.6 -0.64 >More info -0.40 >More info root cortex pH5.7 Original data GEO bulk
99 ahg2-1sid2-2 -0.48 >More info -0.56 >More info WT (Col) control Original data GEO bulk
100 csn5 (csn5a-2 csn5b) dark -0.68 >More info -0.35 >More info WT dark Original data GEO bulk
101 root hypoxia total -0.64 >More info -0.39 >More info root control total Original data GEO bulk
102 MG132 3 h -0.69 >More info -0.34 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
103 root longitudinal zone-4 NaCl -0.48 >More info -0.55 >More info root longitudinal zone-4 Original data GEO bulk
104 phyABCDE Dark -0.50 >More info -0.52 >More info WT Dark Dark whole seedling Original data GEO bulk
105 35S::ZAT12 -0.67 >More info -0.35 >More info gl1 Original data GEO bulk
106 24h +Pi 0.60 >More info 0.42 >More info 24h -Pi root Original data GEO bulk
107 9m.KNO3 -0.48 >More info -0.54 >More info To. KNO3 14 day old Roots Original data GEO bulk
108 SCL3 OE 0.47 >More info 0.54 >More info Col-0 whole root Original data GEO bulk
109 WT+H2O2 -0.45 >More info -0.56 >More info WT H2O2 Original data GEO bulk
110 whole roots 140 mM NaCl 30 minutes -0.44 >More info -0.57 >More info whole roots standard Original data GEO bulk
111 9 hr Hypoxia 1 hr recovery Total RNA -0.43 >More info -0.58 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
112 bbx24 in With Light 0.43 >More info 0.58 >More info WT in With Light light seedling Original data
113 embryo paclobutrazol -0.59 >More info -0.41 >More info embryo-control paclobutrazol embryo Original data GEO bulk
114 WT chitooctaose -0.55 >More info -0.45 >More info WT water Original data GEO bulk
115 At1g54160 ox -0.45 >More info -0.55 >More info Col-0 Original data GEO bulk
116 Col-0 overexpressing At1g54160 control -0.45 >More info -0.55 >More info WT no treatement Original data GEO bulk
117 oas-a1.1 Cd 18h -0.39 >More info -0.61 >More info Cd 18h root Root Original data GEO bulk
118 chito-tetramer -0.47 >More info -0.53 >More info Col Mock Original data GEO bulk
119 Tsu-1 -Fe 24h -0.42 >More info -0.58 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
120 Whole root - low pH 24H -0.43 >More info -0.57 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
121 Tsu -Fe 24h Roots -0.42 >More info -0.58 >More info Tsu +Fe 24h Roots Original data GEO bulk
122 IAA 0h 0.47 >More info 0.53 >More info control 0h root Original data GEO bulk
123 line J1551-5 days control + 2 days salt s -0.54 >More info -0.45 >More info line J1551-7 days-control Original data
124 Mutant arf2-6 (IAA) -0.59 >More info -0.40 >More info Col (IAA) Original data GEO bulk
125 chl1-5 10mM NH4NO3 0.51 >More info 0.48 >More info col 10mM NH4NO3 Root Original data
126 cdkf:1-2 -0.55 >More info -0.43 >More info wt seedling young seedlings Original data GEO bulk
127 root control pSHR -0.62 >More info -0.36 >More info root control total control root Original data GEO bulk
128 root cells columella root cap -Fe -0.66 >More info -0.32 >More info whole roots standard Original data GEO bulk
129 Anoxia -0.47 >More info -0.51 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
130 Whole root - low pH 6H -0.40 >More info -0.58 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
131 pab polysome -0.36 >More info -0.62 >More info WT polysome seedling shoot/aerial seedling Original data
132 Naphthyl- phthalamic acid 3 h -0.63 >More info -0.34 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
133 35:SUB1C 0.55 >More info 0.42 >More info WT whole seedling Original data GEO bulk
134 csn4-1 mutant -0.63 >More info -0.34 >More info WT dark Original data GEO bulk
135 oligomycin 1 h -0.21 >More info -0.76 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
136 sfr3 control -0.38 >More info -0.59 >More info WT control All aerial tissue Original data GEO bulk
137 root hypoxia pSHR -0.52 >More info -0.44 >More info root hypoxia total hypoxia root Original data GEO bulk
138 phyABDE Rc50 -0.51 >More info -0.45 >More info phyABDE Dark red light whole seedling Original data GEO bulk
139 inhibitor A Treated -0.27 >More info -0.69 >More info Negative Control Original data GEO bulk
140 toc1-1-53hr -0.33 >More info -0.63 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
141 FHY3p dark+DEX 0.45 >More info 0.51 >More info FHY3p dark+mock Original data GEO bulk
142 seedlings-week-old RECA1-overexpressing
transgenic		 -0.37 >More info -0.59 >More info seedlings-week-old Col-0 seedlings Original data
143 root cells stele -Fe -0.68 >More info -0.27 >More info whole roots standard Original data GEO bulk
144 pericycle auxin -0.40 >More info -0.55 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
145 GR-REV 30min -0.54 >More info -0.41 >More info Col 30min Original data GEO bulk
146 bak1-3 +Pep2 10h -0.53 >More info -0.42 >More info WT +Pep2 10h Pep2 Original data GEO bulk
147 9 hr Hypoxia Total RNA -0.51 >More info -0.44 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
148 protoplasted roots pH4.6 -0.62 >More info -0.33 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
149 GA4 3 h (ga1 seed) -0.53 >More info -0.41 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
150 (Col-0)+200 uM As -0.29 >More info -0.65 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
151 Col upon hypoxia 6 hrs -0.53 >More info -0.39 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
152 root control pSultr2:2 -0.59 >More info -0.33 >More info root control total control root Original data GEO bulk
153 root epidermis and lateral root cap -S -0.59 >More info -0.33 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
154 GR-REV 60min -0.58 >More info -0.34 >More info Col 60min Original data GEO bulk
155 B.cinerea 18 h infection -0.22 >More info -0.70 >More info Mock 18 h Original data Botrytis cinerea infection
156 roottip hypoxia total -0.41 >More info -0.51 >More info roottip control total Original data GEO bulk
157 Cs shoot 0.23 >More info 0.69 >More info control shoot Original data GEO bulk
158 Botrytis cinerea 18h -0.22 >More info -0.70 >More info control 18h Original data GEO bulk
159 12h volatiles Sm. R3089 0.56 >More info 0.35 >More info 12h untreated whole seedling Original data GEO bulk
160 polysome mRNA eif3k -0.54 >More info -0.37 >More info polysome mRNA WT aerial part Original data GEO bulk
161 6-trichlorophenoxyacetic acid 3 h -0.65 >More info -0.26 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
162 sdg2 -0.53 >More info -0.38 >More info wt seedling Original data GEO bulk
163 TAMM27 roots 2hr KNO3 nitrogen -0.40 >More info -0.51 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
164 K starvation (root) -0.57 >More info -0.34 >More info Ws (root) Original data GEO bulk
165 10mM sucrose 0.61 >More info 0.30 >More info control Whole seedling Original data GEO bulk
166 Propiconazole 3 h -0.64 >More info -0.26 >More info Mock 3 h Original data Effect of GA inhibitors on seedlings
167 8hr-pH4.5 -0.27 >More info -0.63 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
168 roottip control p35S -0.61 >More info -0.29 >More info roottip control total control roottip Original data GEO bulk
169 35S::RSL4 0.57 >More info 0.33 >More info Col-0 Control root Original data GEO bulk
170 Root -K -0.57 >More info -0.33 >More info Control-root Original data GEO bulk
171 IAA 0.5 h -0.22 >More info -0.67 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
172 seedlings + TSA -0.58 >More info -0.31 >More info control seedlings 10-day old whole seedling Original data GEO bulk
173 oligomycin 4 h -0.32 >More info -0.57 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
174 whole roots -Fe 24hour -0.54 >More info -0.34 >More info whole roots standard Original data GEO bulk
175 Fe starvation 24 h -0.54 >More info -0.34 >More info Control Original data GEO bulk
176 Col-0 V. longisporum-inoculated 48 hpi -0.34 >More info -0.54 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
177 Whole root - S 48H -0.51 >More info -0.37 >More info Whole root - S 0H Original data GEO bulk
178 root longitudinal zone-4 pH 4.6 -0.35 >More info -0.53 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
179 (Ws-2)+100 uM As -0.35 >More info -0.53 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
180 root control pRPL11C -0.58 >More info -0.30 >More info root control total control root Original data GEO bulk
181 ANAC102 knock-out 0.55 >More info 0.32 >More info Col-0 Original data GEO bulk
182 ein2 1% sucrose 14-day-old -0.56 >More info -0.31 >More info Col-0 1% sucrose 14-day-old Original data GEO bulk
183 3d old, both 10mM sucrose and 0.2µM SMX 0.62 >More info 0.25 >More info control Whole seedling Original data GEO bulk
184 til1-1 22C -0.50 >More info -0.37 >More info Col-0 22C Original data GEO bulk
185 Root dark control 7h -0.57 >More info -0.30 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
186 whole roots 140 mM NaCl 4 hour -0.29 >More info -0.58 >More info whole roots standard Original data GEO bulk
187 4C 1h -0.32 >More info -0.54 >More info 4C 0h Original data GEO bulk
188 IRP1-OE-Fe--root 0.65 >More info 0.21 >More info COL-0-Fe--root root Original data
189 root control p35S -0.58 >More info -0.28 >More info root control total control root Original data GEO bulk
190 (Col-0)+100 uM As -0.21 >More info -0.65 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
191 NAA -AA 0.56 >More info 0.29 >More info B5 -AA B5 media supplemented with 4.5 µM NAA and untreated Original data
192 erf5 erf6 0.56 >More info 0.29 >More info WT+water water seedlings Original data GEO bulk
193 COL-0-Fe--root -0.55 >More info -0.30 >More info COL-0-Ctrl--root root Original data
194 Oxidative Stress 3 h (root) 0.26 >More info 0.59 >More info Stress mock 3 h (root) Original data Stress treatments
195 phyABDE Dark -0.35 >More info -0.50 >More info WT Dark Dark whole seedling Original data GEO bulk
196 2 hr Hypoxia Total RNA -0.54 >More info -0.30 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
197 frb1 mutant -0.12 >More info -0.72 >More info WT whole seedling Original data GEO bulk
198 cca1-lhy 30m light 0.51 >More info 0.32 >More info 30m light whole seedlings Original data GEO bulk
199 hsfa2 KO -0.52 >More info -0.31 >More info WT (Col-0) whole seedling Original data GEO bulk
200 35S:GIF 0.28 >More info 0.55 >More info Col-0 Apices from 20 day-old plants growth in shortdays Original data
201 jkd-4 QC -0.51 >More info -0.31 >More info Col-0 QC Quiescent Center Original data
202 CabpBVR2 0.57 >More info 0.25 >More info WT Original data GEO bulk
203 WT Root Hypoxia -0.59 >More info -0.23 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
204 PNO8 3 h -0.55 >More info -0.26 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
205 Blue Light 45 min 0.19 >More info 0.62 >More info White Light 45min Original data Light treatments
206 CsUBC13-OE -Fe 0.30 >More info 0.51 >More info Col -Fe root Original data GEO bulk
207 stele pSHR 0h BL -0.64 >More info -0.16 >More info WR 35S 0h BL brassinosteroid root Original data
208 C24-1h IAA -0.27 >More info -0.53 >More info C24-0h IAA whole plant Original data GEO bulk
209 root cells -Fe -0.57 >More info -0.23 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
210 atmospheric CO2 low Mg root 0.58 >More info 0.22 >More info atmospheric CO2 normal Mg root Root Original data
211 root longitudinal zone-3 pH 4.6 -0.51 >More info -0.28 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
212 csn3-1 dark -0.53 >More info -0.26 >More info WT dark Original data GEO bulk
213 Ws HS -0.25 >More info -0.54 >More info Ws control heat shocked seedling Original data GEO bulk
214 Kas2 roots 2hr KNO3 nitrogen -0.27 >More info -0.52 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
215 PRR5-VP 12h light on -0.57 >More info -0.22 >More info WT 12h light on whole plant Original data GEO bulk
216 IAA7mII over-expressor IAA Treated 0.10 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
217 RRE1 Chitin -0.51 >More info -0.27 >More info Chitin Original data GEO bulk
218 gun1-9 control -0.61 >More info -0.17 >More info Col-0 control Original data GEO bulk
219 Col in Pi deficiency medium -0.22 >More info -0.56 >More info Col in control medium root Original data GEO bulk
220 whole roots -Fe 12 hour -0.58 >More info -0.19 >More info whole roots standard Original data GEO bulk
221 roots bhlh100/101 0uM Fe -0.56 >More info -0.20 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
222 gir root 4%glc 0.57 >More info 0.19 >More info Col-7 root 4%glc root Original data GEO bulk
223 ein2 mutant roots IAA -0.56 >More info -0.20 >More info roots ethylene Original data GEO bulk
224 seedling 1.5h after Gamma WT -0.50 >More info -0.26 >More info seedling day 1 unirradiated WT 1.5h Original data
225 35S::PI ap3-3 35S::AP-GR +DEX -0.23 >More info -0.53 >More info 0hr DEX Original data GEO bulk
226 root hypoxia p35S -0.54 >More info -0.21 >More info root hypoxia total hypoxia root Original data GEO bulk
227 Red/FR Light45min -0.00 >More info -0.75 >More info FarRed Light 45min Original data Light treatments
228 toc1-1-89hr -0.55 >More info -0.19 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
229 root control pSUC2 -0.58 >More info -0.16 >More info root control total control root Original data GEO bulk
230 vte1-1 1d vernalization -0.53 >More info -0.21 >More info WT 1d vernalization Original data GEO bulk
231 Light 3day hml -0.12 >More info -0.62 >More info 0h hml Original data
232 WT light -0.55 >More info -0.18 >More info WT dark Original data GEO bulk
233 P-chlorophenoxy- isobutyric acid 3 h -0.58 >More info -0.15 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
234 hsfa2 KO heat shock -0.50 >More info -0.22 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
235 Octopus mutant DYG25 -0.57 >More info -0.15 >More info WS Original data GEO bulk
236 indRKD4ox -0.57 >More info -0.15 >More info Control (35S-GVG) seedlings Original data GEO bulk
237 GO5; 8h switch to ambient CO2 concentrations; -0.19 >More info -0.53 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
238 Transgenic LEC2GR Seedling 1h Dex -0.50 >More info -0.21 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
239 Fenclorim 24hr -0.50 >More info -0.21 >More info Acetone 24hr root Original data GEO bulk
240 E2Fa-Dpa -0.53 >More info -0.18 >More info WT Original data GEO bulk
241 Rose Bengal 0.5 uM -0.11 >More info -0.60 >More info Control RB and PER Rose Bengal Original data
242 Split KNO3 roots - 2days -0.57 >More info -0.13 >More info Split KCl roots - 2days 5mM KNO3 on ONE side for 2 days roots Original data GEO bulk
243 Col0-PsmES4326-24hpi 0.09 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
244 phyABDE 4-day dark- 2 hours Rc50 0.08 >More info 0.62 >More info phyABDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
245 root endodermis and quiescent center 40 mM NaCl -0.18 >More info -0.52 >More info root endodermis and quiescent center Original data GEO bulk
246 ged1 seedlings 0.13 >More info 0.56 >More info Ws seedlings Original data GEO bulk
247 Ws seedlings -0.13 >More info -0.56 >More info ged1 seedlings Original data GEO bulk
248 root hypoxia pSUC2 -0.52 >More info -0.16 >More info root hypoxia total hypoxia root Original data GEO bulk
249 nas4x roots + Fe 0.53 >More info 0.15 >More info WT roots + Fe Roots Original data GEO bulk
250 Aerobic e1 ate2 0.62 >More info 0.05 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
251 ACN1-2 Sucrose 0.15 >More info 0.52 >More info Col-7 Sucrose Original data GEO bulk
252 Col-0 norflurazon 0.61 >More info 0.05 >More info Col-0 control Original data GEO bulk
253 WT H2O2 3h -0.14 >More info -0.52 >More info WT water 3h 3h_H2O2 Original data GEO bulk
254 Leafminer damaged seedlings 0.10 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
255 endosperm paclobutrazol -0.53 >More info -0.12 >More info endosperm-control paclobutrazol endosperm Original data GEO bulk
256 gun1gun5 far-red pretreated 0.13 >More info 0.52 >More info WT far-red pretreated Original data GEO bulk
257 ckh2 CK0 -0.13 >More info -0.51 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D in the absence of kinetin. tissue culture Original data GEO bulk
258 vte1-1 3d vernalization 0.64 >More info -0.01 >More info WT 3d vernalization Original data GEO bulk
259 HSP90 Reduced RNAi-A3 0.53 >More info 0.10 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
260 2d red light grown pif1pif3pif4pif5 (pifq) mutant -0.54 >More info -0.08 >More info 2d red light grown WT(Col-0) seedlings Original data GEO bulk
261 35S:ORE1-protoplast 6h 0.10 >More info 0.52 >More info WT none mesophyll cell protoplasts Original data GEO bulk
262 Col-0 mbs1-1 HL 3h 0.08 >More info 0.54 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
263 Cvi -0.51 >More info -0.10 >More info Ler-2 ~600 pooled 7 mm root tips Original data GEO bulk
264 Laer pretreat GA Flg22 1h -0.10 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
265 oas-a1.1 root -0.52 >More info -0.08 >More info WT-Untreated Root Original data GEO bulk
266 aba3-1 0.01 >More info -0.61 >More info wt Original data GEO bulk
267 SHR-GR Time 12H Dex -0.51 >More info -0.08 >More info SHR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
268 2hr continuous KNO3 SR cell -0.50 >More info -0.08 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
269 roottip hypoxia p35S -0.50 >More info -0.08 >More info roottip hypoxia total hypoxia roottip Original data GEO bulk
270 overexpresser LBD37 in -N -0.50 >More info -0.07 >More info WT in -N nitrogen depletion whole seedling Original data GEO bulk
271 QC pSCR 8h BL 0.50 >More info 0.07 >More info QC pSCR 0h BL brassinosteroid root Original data
272 MPK6 ox Shoot Hypoxia -0.07 >More info 0.64 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
273 opr3 OPDA 2 h -0.03 >More info -0.54 >More info opr3 0 h Original data GEO bulk
274 siliques AtHb1 control 0.04 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
275 sid2-2 9 hpi A. brassicicola 0.00 >More info -0.56 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
276 ERF115OE roottip5days 0.60 >More info -0.04 >More info Col-0 roottip5days root tips Original data
277 ABI3GR +DEX +CHX -0.03 >More info -0.50 >More info ABI3GR -DEX +CHX DEX CHX root/protoplasts Original data GEO bulk
278 WT Root-Pi 0.52 >More info -0.01 >More info WT Root+Pi roots Original data GEO bulk
279 desiccated mature pollen grains -0.11 >More info 0.62 >More info hydrated pollen grains Original data GEO bulk
280 Col BTH -0.18 >More info 0.67 >More info Col rosettes Original data GEO bulk
281 ein2-1 9 hpi A. brassicicola 0.12 >More info -0.59 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
282 seed germinating in countinuous light 24h SL -0.21 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
283 CCA1-ox 6am non-polysomal -0.06 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
284 SAM SE 35S:AGL15 0.59 >More info -0.17 >More info SAM SE Col Original data GEO bulk
285 IAA 1 h 0.16 >More info -0.56 >More info Mock 1 h Original data Basic hormone treatment of seedlings
286 bri1-116 -0.36 >More info 0.73 >More info Col seedling Original data GEO bulk
287 apl 0.52 >More info -0.17 >More info WT phloem Original data
288 BAM8-Lig Ox untreated -0.50 >More info 0.17 >More info WT untreated none shoot Original data
289 piffq 2d WL 0.31 >More info -0.62 >More info WT 2d WL whole seedling Original data GEO bulk
290 shoot control pSultr2:2 -0.22 >More info 0.52 >More info shoot control total Original data GEO bulk
291 UV Stress 24 h (root) 0.53 >More info -0.25 >More info Stress mock 24 h (root) Original data Stress treatments
292 HRE1-RNAi20 hypoxia 6 hrs 0.31 >More info -0.59 >More info Col upon hypoxia 6 hrs hypoxia seedling roots Original data GEO bulk
293 Heat shock optimum -0.38 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
294 vte2-1 3d vernalization 0.25 >More info -0.52 >More info WT 3d vernalization Original data GEO bulk
295 MPK6 ox Root Hypoxia -0.61 >More info 0.36 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
296 Shoot apex inflorescence (after bolting) -0.45 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
297 vte2-1 1d vernalization 0.40 >More info -0.55 >More info WT 1d vernalization Original data GEO bulk
298 root cap pGL2 8h BL 0.51 >More info -0.38 >More info root cap pGL2 0h BL brassinosteroid root Original data
299 ACN1-2 -0.61 >More info 0.64 >More info col-7 Original data GEO bulk