4.0:Analysis result - correlation network
Home    Method    Manual    History   
Module-based correlation network(MCN) centered on TNT-seedlings
  Help> How to read results

>>Show Interactive view (test)
List of experiments correlated with "TNT-seedlings"  Help Download transcriptome of top 30
Score Experiment Correlation from
TNT-seedlings		 Correlation to
TNT-seedlings		 Control Experiment Genotype Treatment Tissue Link to
original data		 Experimental
Category		 Data set
Details
1 TNT-seedlings 1.00 >More info 1.00 >More info DMF-control-seedlings TNT-treated-seedlings whole plant Original data GEO bulk
2 AgNO3 3 h 0.88 >More info 0.83 >More info Mock 3 h Original data Effect of ethylene inhibitors on seedlings
3 5-Triiodobenzoic acid3 h 0.86 >More info 0.85 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
4 IAA/inhibitor B Treated 0.87 >More info 0.81 >More info IAA Treated Original data GEO bulk
5 inhibitor B Treated 0.89 >More info 0.76 >More info Negative Control Original data GEO bulk
6 WT+H2O2 0.87 >More info 0.77 >More info WT H2O2 Original data GEO bulk
7 CMP 4hr 0.87 >More info 0.75 >More info Acetone 4hr root Original data GEO bulk
8 Fenclorim 4hr 0.87 >More info 0.75 >More info Acetone 4hr root Original data GEO bulk
9 Phytoprostane A1 4 h 0.82 >More info 0.79 >More info Col-0 Original data GEO bulk
10 Seedling KUA1-IOX est 0.85 >More info 0.75 >More info Seedling KUA1-IOX mock Original data
11 anac017-2 AntimycinA 3h -0.86 >More info -0.74 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
12 6-trichlorophenoxyacetic acid 3 h 0.81 >More info 0.78 >More info Mock 3 h Original data Effect of auxin inhibitors on seedlings
13 plant (Col-0) 4h phytoprostane A1 0.78 >More info 0.81 >More info plant (tga2-5-6) 4h control Original data GEO bulk
14 root Dosed gold 0.90 >More info 0.68 >More info root No gold .125 mM gold 24 h roots Original data
15 0.125 mM gold 24 h 0.90 >More info 0.68 >More info root 0.125 mM gold 24 h roots Original data GEO bulk
16 DFPM 0.87 >More info 0.69 >More info control Original data GEO bulk
17 chito-tetramer 0.88 >More info 0.67 >More info Col Mock Original data GEO bulk
18 Col-Luc WT 3h antimycin A 0.80 >More info 0.75 >More info Col-Luc WT mock 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
19 Fenclorim 24hr 0.86 >More info 0.68 >More info Acetone 24hr root Original data GEO bulk
20 Triazolopyrimidine EC50 0.79 >More info 0.75 >More info Carrier (Triazolopyrimidine) Original data GEO bulk
21 CMP 24hr 0.88 >More info 0.66 >More info Acetone 24hr root Original data GEO bulk
22 WT AntimycinA 3h 0.80 >More info 0.74 >More info WT water 3h 3h_AntimycinA Original data GEO bulk
23 Primisulfuron EC50 0.80 >More info 0.73 >More info Carrier (primisulfuron) Original data GEO bulk
24 bak1-3 +Pep2 10h 0.86 >More info 0.67 >More info WT +Pep2 10h Pep2 Original data GEO bulk
25 roottip hypoxia total 0.80 >More info 0.72 >More info roottip control total Original data GEO bulk
26 ex2 flu dark 8hours/30 minute light 0.79 >More info 0.72 >More info col dark 8hours/30 minute light Original data GEO bulk
27 Col-0 2HS 0.84 >More info 0.66 >More info Col-0NS 2 h hypoxia stress (2HS) 7-day-old seedlings Original data
28 coi1-2 0.77 >More info 0.72 >More info Col-0 mock Whole seedling Original data GEO bulk
29 Cycloheximide 3 h 0.82 >More info 0.67 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
30 CeO2 germinant -0.73 >More info -0.76 >More info Millipore Water germinant CeO2 seedling Original data
31 seedlings-week-old RECA1-overexpressing
transgenic		 0.75 >More info 0.74 >More info seedlings-week-old Col-0 seedlings Original data
32 R. solani AG8 0.84 >More info 0.65 >More info control Rhizoctonia solani AG8 whole seedling Original data GEO bulk
33 oligomycin 4 h 0.76 >More info 0.72 >More info mock 4 h 4 h_oligo seedling culture Original data GEO bulk
34 chito-octamer 0.83 >More info 0.65 >More info Col Mock Original data GEO bulk
35 Col-0 low oxygen 0.77 >More info 0.71 >More info Col-0 control low oxygen root Original data GEO bulk
36 flu dark 8hours/30 minute light 0.74 >More info 0.74 >More info col dark 8hours/30 minute light Original data GEO bulk
37 Col ozone 3h 0.64 >More info 0.84 >More info Col clean-air 3h ozone Original data GEO bulk
38 GO5; 8h switch to ambient CO2 concentrations; 0.67 >More info 0.80 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
39 6h +Pi -0.80 >More info -0.67 >More info 6h -Pi root Original data GEO bulk
40 Col-0 9 hpi A. brassicicola 0.73 >More info 0.74 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
41 sid2-2 9 hpi A. brassicicola 0.75 >More info 0.72 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
42 dde2-2 9 hpi A. brassicicola 0.72 >More info 0.74 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
43 P.p 10.5hai 0.78 >More info 0.68 >More info At-Control roots Original data GEO bulk
44 Selenate (root) 0.83 >More info 0.63 >More info Ws (root) Original data GEO bulk
45 Root Selenate 0.83 >More info 0.63 >More info Root control 40 micromolar selenate Root Original data GEO bulk
46 NJ15 0.77 >More info 0.69 >More info mock sprayed with 1 µM NJ15 and were gravistimulated by turning then 9° relative to the first direction for 8h after grown vertically for 4 days on MS plates Seedlings Original data
47 Ibuprofen 3 h 0.71 >More info 0.75 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
48 inhibitor A Treated 0.74 >More info 0.72 >More info Negative Control Original data GEO bulk
49 WT Col-0 Bgh inoculated 0.75 >More info 0.71 >More info WT Col-0 Un-inoculated Original data GEO bulk
50 ein2-1 9 hpi A. brassicicola 0.77 >More info 0.68 >More info Col-0 9 hpi mock 3rd-5th true leaves Original data
51 Nicotinamide-53hr 0.72 >More info 0.72 >More info WT-untreated-53hr nicotinamide aerial tissue Original data GEO bulk
52 Nicotinamide-85hr 0.79 >More info 0.64 >More info WT-untreated-85hr nicotinamide aerial tissue Original data GEO bulk
53 Nicotinamide-81hr 0.78 >More info 0.65 >More info WT-untreated-81hr nicotinamide aerial tissue Original data GEO bulk
54 seedlings protease IV 0.75 >More info 0.68 >More info seedlings nontreated control whole seedling Original data
55 flu 0.72 >More info 0.71 >More info WT Col Original data GEO bulk
56 GST NPP1 4 h (leaf) 0.73 >More info 0.70 >More info Mock 4 h (leaf) Original data Elicitor treatments
57 plant (tga2-5-6) 4h phytoprostane A1 0.71 >More info 0.72 >More info plant (tga2-5-6) 4h control Original data GEO bulk
58 col-5 hrpA 12h 0.72 >More info 0.71 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
59 P.p 30hai 0.86 >More info 0.57 >More info At-Control roots Original data GEO bulk
60 whole roots -Fe 72 hour 0.80 >More info 0.62 >More info whole roots standard Original data GEO bulk
61 Botrytis cinerea 48h 0.74 >More info 0.68 >More info control 48h Original data GEO bulk
62 Fe starvation 72 h 0.80 >More info 0.62 >More info Control Original data GEO bulk
63 9 hr Hypoxia 1 hr recovery Total RNA 0.80 >More info 0.61 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
64 Whole root - low pH 12H 0.76 >More info 0.65 >More info Whole root - Std pH 12H pH 4.6 for 12 hr Original data GEO bulk
65 Chemically 0.75 >More info 0.66 >More info Solvent treated for 24 h with 5 μM 2-(2 4-dichlorophenoxy)-N-[4-(isobutyrylamino)-3-methoxyphenyl]propanamid whole seedlings Original data
66 P.p 6hai 0.83 >More info 0.58 >More info At-Control roots Original data GEO bulk
67 IAA/inhibitor A Treated 0.72 >More info 0.69 >More info IAA Treated Original data GEO bulk
68 SA 0.83 >More info 0.57 >More info WT mock Whole seedling Original data GEO bulk
69 2 hr Hypoxia Total RNA 0.83 >More info 0.57 >More info 2 hr Non-Stress Total RNA seedlings Original data GEO bulk
70 Nicotinamide-65hr 0.84 >More info 0.56 >More info WT-untreated-65hr nicotinamide aerial tissue Original data GEO bulk
71 ataf1-1 mutant Col-0 Bgh inoculated 0.69 >More info 0.71 >More info ataf1-1 mutant Col-0 Un-inoculated Original data GEO bulk
72 B.cinerea 18 h infection 0.75 >More info 0.65 >More info Mock 18 h Original data Botrytis cinerea infection
73 Botrytis cinerea 18h 0.75 >More info 0.65 >More info control 18h Original data GEO bulk
74 Sulfometuron EC50 0.65 >More info 0.75 >More info Carrier Original data GEO bulk
75 WT seedlings MV 0.77 >More info 0.62 >More info WT seedlings control Seedlings Original data GEO bulk
76 root hypoxia total 0.81 >More info 0.58 >More info root control total Original data GEO bulk
77 PNO8 3 h 0.65 >More info 0.74 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
78 whole roots -Fe 48 hour 0.76 >More info 0.63 >More info whole roots standard Original data GEO bulk
79 Leaf wounded 0.76 >More info 0.63 >More info Leaf control vegetative leaf Original data GEO bulk
80 Nicotinamide-57hr 0.78 >More info 0.61 >More info WT-untreated-57hr nicotinamide aerial tissue Original data GEO bulk
81 Whole root - low pH 6H 0.65 >More info 0.73 >More info Whole root - Std pH 6H pH 4.6 for 6 hr Original data GEO bulk
82 FLIGHT TAGESB plate6 ROOTS 0.81 >More info 0.57 >More info GROUND CONTROL TAGESB plate6 ROOTS plant tissue Original data
83 GST 4 h (leaf) 0.71 >More info 0.67 >More info Mock 4 h (leaf) Original data Elicitor treatments
84 Cocultivation 8 hrs root 0.75 >More info 0.63 >More info Mock cocultivation 8 hrs root Root Original data
85 hira-root -0.74 >More info -0.63 >More info WT-root root Original data
86 P.p 2.5hai 0.78 >More info 0.59 >More info At-Control roots Original data GEO bulk
87 Nicotinamide-89hr 0.79 >More info 0.58 >More info WT-untreated-89hr nicotinamide aerial tissue Original data GEO bulk
88 pepr1-1 Pepr2-3 +Pep2 2h -0.65 >More info -0.72 >More info WT +Pep2 2h Pep2 Original data GEO bulk
89 SA 4mM 0.68 >More info 0.69 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
90 Nicotinamide-73hr 0.81 >More info 0.56 >More info WT-untreated-73hr nicotinamide aerial tissue Original data GEO bulk
91 9 hr Hypoxia Total RNA 0.80 >More info 0.56 >More info 9 hr Non-Stress Total RNA seedlings Original data GEO bulk
92 WT chitooctaose 0.81 >More info 0.55 >More info WT water Original data GEO bulk
93 Mutant axr3-1 (IAA) 0.71 >More info 0.65 >More info Col (IAA) Original data GEO bulk
94 8hr-pH4.5 0.73 >More info 0.63 >More info 8hr-pH6 8hr pH 4.5 roots Original data GEO bulk
95 Col-0 wt Hypoxic 0.76 >More info 0.60 >More info Col-0 wt Aerobic hypoxic treatment Original data GEO bulk
96 oligomycin 1 h 0.60 >More info 0.76 >More info mock 1 h 1 h_oligo seedling culture Original data GEO bulk
97 WT+chitooctaose 0.64 >More info 0.72 >More info WT+water chitooctaose seedlings Original data GEO bulk
98 flu over-tAPX 0.63 >More info 0.73 >More info WT Col Original data GEO bulk
99 Nicotinamide-61hr 0.79 >More info 0.56 >More info WT-untreated-61hr nicotinamide aerial tissue Original data GEO bulk
100 low CO2 + light 0.65 >More info 0.70 >More info normal CO2 + light Original data GEO bulk
101 ABA DFPM 0.80 >More info 0.55 >More info control Original data GEO bulk
102 col-5 DC3000 12h 0.70 >More info 0.65 >More info col-5 MgCl2 12h Whole leaf Original data GEO bulk
103 root epidermis and lateral root cap pH4.6 0.79 >More info 0.56 >More info root epidermis and lateral root cap pH5.7 Original data GEO bulk
104 Protoplast Induced 0.74 >More info 0.61 >More info Uninduced Original data GEO bulk
105 Chitosan 3h Treatment 0.80 >More info 0.54 >More info No Chitosan Control chitosan treatment for 3 hours under continuous light. Original data GEO bulk
106 Tsu -Fe 24h Roots 0.65 >More info 0.69 >More info Tsu +Fe 24h Roots Original data GEO bulk
107 WT 30μM arsenate 8 hours. 0.77 >More info 0.57 >More info WT control (not supplemented). Original data
108 Tsu-1 -Fe 24h 0.65 >More info 0.69 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
109 IMI 4mM 0.63 >More info 0.71 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
110 Leaf GLU1-KO 0.67 >More info 0.66 >More info Leaf Col(0) rosette leaves Original data GEO bulk
111 Nicotinamide-69hr 0.81 >More info 0.52 >More info WT-untreated-69hr nicotinamide aerial tissue Original data GEO bulk
112 safener treated 0.71 >More info 0.62 >More info Col0 mock safener (mefenpyr and isoxadifen) rosette leaves Original data GEO bulk
113 Col0-PsmES4326-24hpi 0.72 >More info 0.61 >More info Col0-mock-24hpi leaf Original data GEO bulk
114 bak1-3 +Pep2 2h 0.76 >More info 0.56 >More info WT +Pep2 2h Pep2 Original data GEO bulk
115 rao2 H2O2 3h -0.64 >More info -0.68 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
116 leaf blade in D 0.67 >More info 0.65 >More info leaf blade in WL leaf blades Original data GEO bulk
117 bbx24 in Simulated Shade -0.82 >More info -0.50 >More info WT in simulated shade shade seedling Original data
118 root stele 40 mM NaCls 0.82 >More info 0.50 >More info root stele Original data GEO bulk
119 root stele pH4.6 0.71 >More info 0.61 >More info root stele pH5.7 Original data GEO bulk
120 Lipopolysaccaride4 h (leaf) 0.73 >More info 0.59 >More info Mock 4 h (leaf) Original data Elicitor treatments
121 15m.KCl 0.71 >More info 0.61 >More info To. KCl 14 day old Roots Original data GEO bulk
122 Phaseolicola 2 h (leaf) 0.69 >More info 0.62 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
123 Light 0.61 >More info 0.70 >More info Control Original data GEO bulk
124 oas-a1.1 Cd 18h 0.69 >More info 0.62 >More info Cd 18h root Root Original data GEO bulk
125 35S::PI ap3-3 35S::AP-GR +DEX 0.60 >More info 0.71 >More info 0hr DEX Original data GEO bulk
126 SCR-GR Time 1H Dex 0.71 >More info 0.60 >More info SCR-GR Time 0H Dex Dex media for 1 hour Original data GEO bulk
127 efr-1 +elf18 10h -0.63 >More info -0.68 >More info WT +elf18 10h elf18 Original data GEO bulk
128 Dex-rga(delta17) 4h GA4 -0.66 >More info -0.64 >More info Vector 4h GA4 shoots Original data GEO bulk
129 LTN008-2 aza-dc 0.75 >More info 0.55 >More info LTN012-2 Mock Original data
130 4C 1h 0.68 >More info 0.62 >More info 4C 0h Original data GEO bulk
131 A. thaliana-A. lyrata hybrid -0.69 >More info -0.61 >More info A. thaliana mature leaves before flowering Original data GEO bulk
132 1h +Pi -0.73 >More info -0.57 >More info 1h -Pi root Original data GEO bulk
133 Rose Bengal 0.5 uM 0.63 >More info 0.66 >More info Control RB and PER Rose Bengal Original data
134 Col-0 ozone- (control genotype coi1-16 ein2 sid2) 0.75 >More info 0.54 >More info Col-0 ctrl (control genotype coi1-16 ein2 sid2) 350 ppb ozone exposure for 2hr Original data
135 toc1-1-81hr 0.69 >More info 0.60 >More info WT-untreated-81hr none seedlings aerial tissue Original data GEO bulk
136 HopZ1a treated 0.66 >More info 0.63 >More info col Original data GEO bulk
137 1 h Light IP RNA -0.65 >More info -0.63 >More info 1h Dark IP RNA 1 h light control whole seedlings Original data GEO bulk
138 toc1-1-65hr 0.80 >More info 0.48 >More info WT-untreated-65hr none seedlings aerial tissue Original data GEO bulk
139 msh1 albino 0.64 >More info 0.64 >More info WT aerial part Original data GEO bulk
140 Col-0 V. longisporum-inoculated 48 hpi 0.66 >More info 0.62 >More info Col-0 mock 48 hpi Pool of >50 individual roots Original data
141 Col-0 flu HL 3h 0.75 >More info 0.53 >More info Col-0 WT HL 3h HL stress (1 µE m−2 s−1) whole seedlings without root Original data
142 WT-NOCO2 INFECTED 0.77 >More info 0.51 >More info WT-MOCK Original data GEO bulk
143 til1-1 22C 0.76 >More info 0.52 >More info Col-0 22C Original data GEO bulk
144 Col-0 C2H4 24h 0.60 >More info 0.68 >More info Col-0 air 4 hour ethylene gas (10 ppm) Original data GEO bulk
145 Col-0-avrB-6h 0.65 >More info 0.63 >More info Col-0-untreated-control avrB leaf tissue Original data GEO bulk
146 ARR22-ox (t-zeatin 3 h) 0.76 >More info 0.52 >More info Col-0 (t-zeatin 3 h) Original data Cytokinin treatment of seedlings
147 ice1 control 0.72 >More info 0.55 >More info WT control Original data GEO bulk
148 upf1 0.78 >More info 0.49 >More info WT whole plant Original data GEO bulk
149 seedling 24h after HZE atm-1 0.73 >More info 0.54 >More info seedling day 2 unirradiated atm-1 24h Original data
150 ahg2-1sid2-2 0.68 >More info 0.59 >More info WT (Col) control Original data GEO bulk
151 WT H2O2 3h 0.67 >More info 0.60 >More info WT water 3h 3h_H2O2 Original data GEO bulk
152 (Ws-2)+100 uM As 0.69 >More info 0.58 >More info (Ws-2)+0 uM As treated with 100 uM As Roots Original data GEO bulk
153 Whole root - low pH 3H 0.56 >More info 0.71 >More info Whole root - Std pH 3H pH 4.6 for 3 hr Original data GEO bulk
154 toc1-1-85hr 0.67 >More info 0.60 >More info WT-untreated-85hr none seedlings aerial tissue Original data GEO bulk
155 Mutant arf19-1 (IAA) -0.67 >More info -0.60 >More info Col (IAA) Original data GEO bulk
156 toc1-1-73hr 0.80 >More info 0.47 >More info WT-untreated-73hr none seedlings aerial tissue Original data GEO bulk
157 Col-0 ozone 0.75 >More info 0.52 >More info Col-0 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
158 tor mutant glucose 0.74 >More info 0.53 >More info WT (Col) glucose glucose seedlings Original data GEO bulk
159 nia1nia2noa1-2 0.74 >More info 0.53 >More info Col-0 whole seedlings Original data GEO bulk
160 toc1-1-53hr 0.77 >More info 0.50 >More info WT-untreated-53hr none seedlings aerial tissue Original data GEO bulk
161 WT 2-4h Xanthomonas 0.64 >More info 0.62 >More info WT T0 Original data GEO bulk
162 WT-Dry 0.75 >More info 0.51 >More info WT-CK dehydration treatment 1h Original data
163 GA 0.66 >More info 0.60 >More info none GA Rosette Original data GEO bulk
164 Anoxia 0.82 >More info 0.44 >More info Control anoxia for 6h at 23°C in the dark. Original data GEO bulk
165 2hr continuous KNO3 PeR cell -0.68 >More info -0.58 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
166 TiO2 germinant -0.70 >More info -0.55 >More info Millipore Water germinant TiO2 seedling Original data
167 WT 3H Cold 0.74 >More info 0.51 >More info WT control Original data GEO bulk
168 Leafminer damaged seedlings 0.69 >More info 0.56 >More info Healthy seedlings leaves Original data GEO bulk
169 rcf1-1 cold 24h 0.59 >More info 0.66 >More info WT cold 24h cold at 4°C seedlings Original data GEO bulk
170 Col upon hypoxia 6 hrs 0.72 >More info 0.53 >More info Col upon normoxia hypoxia seedling roots Original data GEO bulk
171 Nicotinamide-93hr 0.75 >More info 0.50 >More info WT-untreated-93hr nicotinamide aerial tissue Original data GEO bulk
172 Col-0 ozone- (control genotype tga2 tag5 tga6) 0.72 >More info 0.53 >More info Col-0 ctrl (control genotype tga2 tag5 tga6) 350 ppb ozone exposure for 2hr Original data
173 BLM+INA 0.75 >More info 0.50 >More info CK BLM and INA seedling Original data
174 K starvation (root) 0.72 >More info 0.53 >More info Ws (root) Original data GEO bulk
175 Root -K 0.72 >More info 0.53 >More info Control-root Original data GEO bulk
176 nia1nia2 0.63 >More info 0.62 >More info Col-0 whole seedlings Original data GEO bulk
177 Hydrogen Peroxide 500 uM 0.59 >More info 0.66 >More info Control RB and PER Hydrogen Peroxide Original data
178 rosette Dark Wounded 0.77 >More info 0.47 >More info rosette Dark Control Original data GEO bulk
179 wavy 0.82 >More info 0.42 >More info WT Original data GEO bulk
180 Heat and anoxia 0.73 >More info 0.51 >More info Control treatment: 38°c for 90 minutes and thereafter under anoxia for 6h at 23°C in the dark. Original data GEO bulk
181 35S:RPS4 eds1-2 24h -0.67 >More info -0.57 >More info 35S:RPS4 24h leaves Original data
182 hrcC 0.62 >More info 0.62 >More info MgCl2 5x10^7 cfu/ml DC3000 hrcC mutant Original data GEO bulk
183 Te ozone 0.70 >More info 0.54 >More info Te ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
184 cpctry 0.63 >More info 0.61 >More info Col Original data GEO bulk
185 Root -Cs 0.75 >More info 0.48 >More info Control-root Original data GEO bulk
186 Whole root - low pH 24H 0.72 >More info 0.51 >More info Whole root - Std pH 24H pH 4.6 for 24 hr Original data GEO bulk
187 Col-0 under 4 days salt 0.61 >More info 0.62 >More info Col-0 under control 4 days salt treatment rosette Original data
188 toc1-1-49hr 0.81 >More info 0.42 >More info WT-untreated-49hr none seedlings aerial tissue Original data GEO bulk
189 FLIGHT TAGESB plate6 SHOOTS 0.76 >More info 0.47 >More info GROUND CONTROL TAGESB plate6 SHOOTS plant tissue Original data
190 Col whole leaf 5dpi 0.60 >More info 0.63 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
191 seedling -S Exp 0.58 >More info 0.65 >More info seedling FN Exp seedling Original data
192 cat2-short-day 2d 0.56 >More info 0.66 >More info Col0-SD2 transferred to air (400 ppm) for 2 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
193 pvip1 pvip2 0.66 >More info 0.56 >More info Col-0 whole rosettes Original data GEO bulk
194 root cells endodermis 140mM NaCl 3 hours 0.70 >More info 0.52 >More info root cells endodermis standard 1 hour root cells endodermis Original data
195 anac017-1 H2O2 3h -0.69 >More info -0.53 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
196 Flagellin 4 h (leaf) 0.61 >More info 0.61 >More info Mock 4 h (leaf) Original data Elicitor treatments
197 9m.KCl 0.64 >More info 0.58 >More info To. KCl 14 day old Roots Original data GEO bulk
198 coi1-16 ein2 sid2 ctrl -0.73 >More info -0.49 >More info Col-0 ozone- (control genotype coi1-16 ein2 sid2) control Original data
199 mkk1/mkk2 24h BTH rep 0.64 >More info 0.58 >More info Col-0 24h BTH rep Original data GEO bulk
200 dicamba 0.79 >More info 0.43 >More info WT mock whole seedling Original data GEO bulk
201 pip3 At2g19270 TDNA 9 0.76 >More info 0.45 >More info Col-0 whole plant Original data GEO bulk
202 BLM 0.73 >More info 0.48 >More info CK BLM seedling Original data
203 Roots Cd -0.85 >More info -0.36 >More info Roots control Cd Root Original data GEO bulk
204 anac017-2 water 3h 0.58 >More info 0.63 >More info WT water 3h 3h_water Original data GEO bulk
205 ulp1c ulp1d +Pto 0.71 >More info 0.50 >More info ulp1c ulp1d mock Original data GEO bulk
206 +1.6 mM Tween 20 1 h. 0.70 >More info 0.51 >More info +distilled water 1 h. Original data GEO bulk
207 upf3 0.70 >More info 0.51 >More info WT whole plant Original data GEO bulk
208 WT Root Hypoxia 0.68 >More info 0.52 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
209 bHLH122 ox -0.64 >More info -0.56 >More info WT Col-0 bHLH122 overexpression shoot Original data GEO bulk
210 9 hr Hypoxia 1 hr recovery IP RNA 0.67 >More info 0.53 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
211 SLWF infested 0.65 >More info 0.55 >More info SLWF uninfested rosette tissue Original data GEO bulk
212 ein5-1 ski2-3 0.71 >More info 0.49 >More info Col-0 aerial tissue Original data
213 pepr1-1 Pepr2-3 +Pep2 10h -0.62 >More info -0.58 >More info WT +Pep2 10h Pep2 Original data GEO bulk
214 HopZ1a treated ulp1c ulp1d 0.59 >More info 0.61 >More info col Original data GEO bulk
215 ABA control 0.63 >More info 0.56 >More info No ABA control Original data GEO bulk
216 AvrRpm1 2 h (leaf) 0.58 >More info 0.61 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
217 shoots bhlh100/101 0uM Fe 0.66 >More info 0.53 >More info shoots WT 0uM Fe 0uM Fe shoots Original data GEO bulk
218 vte2-1 3d vernalization 0.61 >More info 0.58 >More info WT 3d vernalization Original data GEO bulk
219 gai Control 0.62 >More info 0.57 >More info Laer Control leaf discs Original data GEO bulk
220 hrpA 7h 0.57 >More info 0.62 >More info Mock 7h hrpA Original data GEO bulk
221 WT flg22 2h 0.59 >More info 0.60 >More info WT 0h Leaf tissue Original data GEO bulk
222 Heat shock optimum 0.54 >More info 0.65 >More info Heat shock baseline Photosynthesis at optimum temperature leaf first fully expanded Original data GEO bulk
223 9 hr Hypoxia IP RNA 0.68 >More info 0.50 >More info 9 hr Non-Stress IP RNA seedlings Original data GEO bulk
224 aba3-1 0.63 >More info 0.55 >More info wt Original data GEO bulk
225 35S:RPS4 eds1-2 2h -0.51 >More info -0.67 >More info 35S:RPS4 2h leaves Original data
226 Cor 10h 0.56 >More info 0.62 >More info Mock 10h Cor Original data GEO bulk
227 35S:RPS4 eds1-2 8h -0.55 >More info -0.63 >More info 35S:RPS4 8h leaves Original data
228 Dark 3day ivd 0.75 >More info 0.43 >More info 0h ivd Original data
229 detached inflorescences 24h 0.58 >More info 0.60 >More info detached inflorescences 0h detached dark-held immature inflorescences inflorescences from the primary bolts Original data GEO bulk
230 4d red light grown hmr-5 seedlings 0.69 >More info 0.49 >More info 4d red light grown WT(Col-0) seedlings Original data
231 Osmotic Stress 24 h (shoot) 0.59 >More info 0.58 >More info Stress mock 24 h (shoot) Original data Stress treatments
232 root protoplasts 40 mM NaCl 0.78 >More info 0.39 >More info whole roots 40 mM NaCl protoplasting and FACS sorting Original data GEO bulk
233 Kas -Fe 24h Roots -0.62 >More info -0.55 >More info Kas +Fe 24h Roots Original data GEO bulk
234 4C 2h(SOIL) 0.72 >More info 0.45 >More info 4C 0h(SOIL) Original data GEO bulk
235 Mutant axr3-1 0.60 >More info 0.57 >More info Col Original data GEO bulk
236 rpoTmp(line) MLD stressed 0.62 >More info 0.55 >More info WT(Col0) MLD stressed (control rpoTmp) leaf Original data
237 JA 0.74 >More info 0.43 >More info Col-0 mock Whole seedling Original data GEO bulk
238 Kas-1 -Fe 24h -0.62 >More info -0.55 >More info Kas-1 +Fe 24h roots Original data GEO bulk
239 atgsnor1-3-avrB-6h 0.50 >More info 0.67 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
240 Shoot -Cs 0.37 >More info 0.80 >More info Control-shoot Original data GEO bulk
241 AFB1 0h 0.66 >More info 0.50 >More info Col 0h Leaf Original data GEO bulk
242 AvrRpt2 Col-0 6hpi 0.64 >More info 0.52 >More info AvrRpt2 Col-0 0hpi Infiltration of Psm mature leaf Original data
243 E.coli TUV86 2 fliC 7h 0.50 >More info 0.66 >More info Mock 7h E.coli TUV86 2 fliC Original data GEO bulk
244 whole roots 140 mM NaCl 1 hour 0.66 >More info 0.50 >More info whole roots standard Original data GEO bulk
245 sid2-avrB-6h 0.66 >More info 0.50 >More info Col-0-avrB-6h avrB leaf tissue Original data GEO bulk
246 C24 ozone 0.68 >More info 0.48 >More info C24 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
247 (Col-0)+200 uM As 0.63 >More info 0.53 >More info (Col-0)+0 uM As treated with 200 uM As Roots Original data GEO bulk
248 root longitudinal zone-3 pH 4.6 0.52 >More info 0.64 >More info root longitudinal zone-3 pH 5.7 Original data GEO bulk
249 wrky33 Bc inoculation 14h 0.71 >More info 0.45 >More info wrky33 mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
250 whole roots 140 mM NaCl 30 minutes 0.57 >More info 0.59 >More info whole roots standard Original data GEO bulk
251 root columella root cap 40 mM NaCl 0.71 >More info 0.45 >More info root columella root cap Original data GEO bulk
252 pif4pif5 mut 1h FR -0.70 >More info -0.46 >More info WT 1h FR Original data GEO bulk
253 root - 01% oxygen - 2h 0.57 >More info 0.59 >More info root - 21% oxygen - 2h Original data GEO bulk
254 FHY3p dark+DEX -0.83 >More info -0.33 >More info FHY3p dark+mock Original data GEO bulk
255 MPK6 ox Root Hypoxia 0.73 >More info 0.43 >More info WT Root Normoxia (mock) Hypoxia Root Original data GEO bulk
256 Elevated CO2 AMPLE N NIGHT 0.64 >More info 0.51 >More info Ambient CO2 AMPLE N NIGHT Youngest Most Fully Expanded Leaf Original data
257 CT101 ozone 0.66 >More info 0.49 >More info CT101 ctrl 350 ppb ozone exposure for 2hr whole rosette Original data
258 seedlings +5AC 0.76 >More info 0.39 >More info control seedlings 10-day old whole seedling Original data GEO bulk
259 rosette leaves fdh 0.58 >More info 0.57 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
260 seedling 1.5h after HZE WT 0.73 >More info 0.42 >More info seedling day 1 unirradiated WT 1.5h Original data
261 ckh1 CK200 0.67 >More info 0.48 >More info WT (Ler) CK200 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and high level (200 ng/ml) of kinetin. tissue culture Original data GEO bulk
262 shoot-10 μM DEX- 6 hr 0.60 >More info 0.55 >More info shoot-10 μM DEX- 0 hr SHR induction by DEX whole shoot Original data
263 IAA 0h -0.74 >More info -0.41 >More info control 0h root Original data GEO bulk
264 gabaculin 0.56 >More info 0.59 >More info WT Col-0 seedling Original data GEO bulk
265 12m.KCl 0.64 >More info 0.51 >More info To. KCl 14 day old Roots Original data GEO bulk
266 npr1 sni1 brca2a SA -0.57 >More info -0.58 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
267 WT Shoot Hypoxia 0.54 >More info 0.61 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
268 E.coli 0157 H7 7h 0.49 >More info 0.66 >More info Mock 7h E.coli 0157 H7 Original data GEO bulk
269 Col in Pi deficiency medium 0.54 >More info 0.60 >More info Col in control medium root Original data GEO bulk
270 WT Bc inoculation 14h 0.61 >More info 0.53 >More info WT mock 14 hour post inoculation with spores of Botrytis cinerea 2100 leaves Original data
271 pmr5 pmr6 0.52 >More info 0.62 >More info Col-0 Original data GEO bulk
272 columella auxin 0.64 >More info 0.50 >More info columella control 5 uM indole-3-acetic acid columella Original data GEO bulk
273 aba1 hypocotyl 0.64 >More info 0.50 >More info Ler hypocotyl hypocotyl Original data GEO bulk
274 (Col-0)+100 uM As 0.58 >More info 0.56 >More info (Col-0)+0 uM As treated with 100 uM As Roots Original data GEO bulk
275 spch 0.66 >More info 0.48 >More info Col-0 WT whole seedling Original data GEO bulk
276 WT roots - Fe 0.74 >More info 0.40 >More info WT roots + Fe Roots Original data GEO bulk
277 MPK6 ox Shoot Hypoxia 0.52 >More info 0.62 >More info WT Shoot Normoxia (mock) Hypoxia Shoot Original data GEO bulk
278 low CO2 + dark 0.52 >More info 0.62 >More info normal CO2 + light Original data GEO bulk
279 leaf blade in FRD 0.64 >More info 0.50 >More info leaf blade in WL leaf blades Original data GEO bulk
280 Col-0 0h NAA 0.70 >More info 0.44 >More info Col-0 6h MOCK Original data GEO bulk
281 Leafminer locally damaged thaliana seedlings 0.69 >More info 0.45 >More info Undamaged thaliana seedlings locally damaged by leafminer leaves Original data GEO bulk
282 seedling 3h after Gamma WT 0.57 >More info 0.57 >More info seedling day 1 unirradiated WT 3h Original data
283 1 h Light Total RNA -0.57 >More info -0.57 >More info 1h Dark Total RNA 1 h light control whole seedlings Original data GEO bulk
284 Laer treat paclobutrazol (PAC) 0.46 >More info 0.67 >More info Laer Control leaf discs Original data GEO bulk
285 Kas2 roots 2hr KNO3 nitrogen 0.74 >More info 0.39 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
286 shoot hypoxia total 0.53 >More info 0.60 >More info shoot control total Original data GEO bulk
287 sex1-3 0.63 >More info 0.50 >More info Col-WT leaves Original data GEO bulk
288 Col-0 Flg22 4h 0.62 >More info 0.51 >More info Col-0 H2O 4h Original data GEO bulk
289 Nicotinamide-49hr 0.76 >More info 0.37 >More info WT-untreated-49hr nicotinamide aerial tissue Original data GEO bulk
290 sni1 0.65 >More info 0.48 >More info WT Original data GEO bulk
291 Mutant coi1(leaf) -0.66 >More info -0.47 >More info Col-0 (leaf) Original data GEO bulk
292 rosette Light Wounded 0.59 >More info 0.54 >More info rosette Light Control Original data GEO bulk
293 coi1-2 JA 0.56 >More info 0.57 >More info JA Whole seedling Original data GEO bulk
294 Imidazolinone EC50 0.48 >More info 0.65 >More info Carrier (Imidazolinone) Original data GEO bulk
295 WT (Col) glucose -0.67 >More info -0.45 >More info WT (Col) glucose seedlings Original data GEO bulk
296 AtMinD1 Prolonged-induction 0.73 >More info 0.39 >More info Control whole plant Original data GEO bulk
297 gh3.5-1D 48 hpi 0.62 >More info 0.50 >More info Col-0 uninoculated Original data GEO bulk
298 9m.KNO3 0.72 >More info 0.40 >More info To. KNO3 14 day old Roots Original data GEO bulk
299 cdpk6-yfp 0.66 >More info 0.46 >More info Kan seedlings Original data GEO bulk
300 toc1-1-69hr 0.73 >More info 0.39 >More info WT-untreated-69hr none seedlings aerial tissue Original data GEO bulk
301 Mutant gh3.5-1D (AvrRpt2) 0.61 >More info 0.51 >More info Col-0 (AvrRpt2) Original data GEO bulk
302 WT-SA 0.53 >More info 0.59 >More info WT-mock spray 1 mM SA for 6 hrs (spray) mature leaf Original data GEO bulk
303 OsSAP11 expressing -0.58 >More info -0.54 >More info WT seedlings Original data GEO bulk
304 coi1-16 ein2 sid2 ozone 0.67 >More info 0.45 >More info coi1-16 ein2 sid2 ctrl 350 ppb ozone exposure for 2hr Original data
305 gul2-1 mutant 0.66 >More info 0.46 >More info WT 7 day-old whole seedlings Original data
306 root cells stele 140mM NaCl 3 hours 0.62 >More info 0.50 >More info root cells stele standard 1 hour root cells stele Original data
307 gpa1 -ABA GC -0.47 >More info -0.65 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
308 ani1 T16 -0.67 >More info -0.44 >More info WT T16 root tissue Original data GEO bulk
309 CMV-WT 0.52 >More info 0.59 >More info Mock-At Aerial tissues Original data GEO bulk
310 cdkf:1-2 0.72 >More info 0.39 >More info wt seedling young seedlings Original data GEO bulk
311 smg7b-1 0.59 >More info 0.52 >More info WT whole plant Original data GEO bulk
312 abi1 hypocotyl 0.62 >More info 0.49 >More info Ler hypocotyl hypocotyl Original data GEO bulk
313 Seedling-HeatStressed POLYSOMESmRNA 0.58 >More info 0.53 >More info Seedling-control POLYSOMESmRNA seedling Original data
314 wnk8-1 untreated -0.60 >More info -0.51 >More info Col-0 untreated seedlings Original data GEO bulk
315 WT 3h -P 0.39 >More info 0.72 >More info WT 3h +P No phosphate medium seedlings without roots Original data GEO bulk
316 sicy-192 gun1-101 cotyledons 0.49 >More info 0.62 >More info WT cotyledons cotyledons Original data
317 cat2-2; 8h switch to ambient CO2 concentrations; 0.42 >More info 0.69 >More info WT; 8h switch to ambient CO2 concentrations; 2 whole rosettes Original data
318 cpr5scv1 0.63 >More info 0.47 >More info WT(COL) Original data GEO bulk
319 SCR 24hr-S 0.55 >More info 0.55 >More info SCR 0hr endodermis Original data
320 Col-0 37C 0.68 >More info 0.42 >More info Col-0 22C Original data GEO bulk
321 miR393 flg22 2h 0.52 >More info 0.58 >More info WT 0h Leaf tissue Original data GEO bulk
322 embryo paclobutrazol 0.66 >More info 0.44 >More info embryo-control paclobutrazol embryo Original data GEO bulk
323 epidermis auxin 0.72 >More info 0.38 >More info epidermis control 5 uM indole-3-acetic acid epidermis Original data GEO bulk
324 TA induced 0.52 >More info 0.58 >More info Methanol TA Suspension cells Original data GEO bulk
325 UV 0.54 >More info 0.56 >More info WT aerial region Original data GEO bulk
326 Dex-rga(delta17) 2h GA4 -0.61 >More info -0.49 >More info Vector 4h GA4 shoots Original data GEO bulk
327 AFB1 flg22 1h 0.59 >More info 0.51 >More info WT 0h Leaf tissue Original data GEO bulk
328 shoots bhlh100/101 100uM Fe 0.58 >More info 0.52 >More info shoots WT 100uM Fe 100uM Fe shoots Original data GEO bulk
329 irradiated leaf (WT 1d) 0.54 >More info 0.55 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
330 ice1 6H Cold 0.55 >More info 0.54 >More info WT 6H Cold Original data GEO bulk
331 SCR 48hr-S 0.56 >More info 0.53 >More info SCR 0hr endodermis Original data
332 root cells cortex 140mM NaCl 3 hours 0.63 >More info 0.46 >More info root cells cortex standard 1 hour root cells cortex Original data
333 root cells endodermis 140mM NaCl 8 hours 0.65 >More info 0.44 >More info root cells endodermis standard 1 hour root cells endodermis Original data
334 root epidermis and lateral root cap 40 mM NaCl 0.77 >More info 0.32 >More info root epidermis and lateral root cap Original data GEO bulk
335 ORS1 induced 0.52 >More info 0.57 >More info mock-induced rosette leaves Original data GEO bulk
336 CCA14 dark late 0.82 >More info 0.27 >More info Col dark late Original data GEO bulk
337 petiole in FRD 0.58 >More info 0.51 >More info petiole in WL petioles Original data GEO bulk
338 bio4-1 mutant watered00µM biotin leaves -0.60 >More info -0.49 >More info bio4-1 mutant leaves leaves Original data GEO bulk
339 RGA-GR-DEX 0.62 >More info 0.47 >More info RGA-GR-MOCK DEX inflorescence Original data GEO bulk
340 pericycle auxin 0.63 >More info 0.45 >More info pericycle control 5 uM indole-3-acetic acid pericycle Original data GEO bulk
341 Dex-rga(delta17) 4h GA4+DEX -0.61 >More info -0.47 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
342 GA4 3 h (ga1 seed) 0.77 >More info 0.31 >More info Mock 3 h Original data Effect of gibberellin during seed imbibition
343 SCR-GR Time 12H Dex 0.57 >More info 0.51 >More info SCR-GR Time 0H Dex Dex media for 12 hours Original data GEO bulk
344 S58-2 0.51 >More info 0.57 >More info wt Original data GEO bulk
345 Dex-rga(delta17) 2h GA4+DEX -0.61 >More info -0.47 >More info Vector 4h GA4+DEX shoots Original data GEO bulk
346 ahg2-1 0.67 >More info 0.41 >More info WT (Col) control Original data GEO bulk
347 abi4-102 (II) 0.65 >More info 0.43 >More info Col (II) rosette Original data GEO bulk
348 Mutant siz1-3 (Drought) 0.57 >More info 0.51 >More info Col-0 (Drought) Original data GEO bulk
349 dor control 0.61 >More info 0.47 >More info WT control Original data GEO bulk
350 cpr5 0.64 >More info 0.44 >More info WT seedling Original data GEO bulk
351 siz1-3 drought 0.57 >More info 0.51 >More info Col-0 drought Original data GEO bulk
352 Red/FR Light45min 0.27 >More info 0.81 >More info FarRed Light 45min Original data Light treatments
353 pmr5 0.49 >More info 0.59 >More info Col-0 Original data GEO bulk
354 root cells cortex -Fe 0.81 >More info 0.26 >More info whole roots standard Original data GEO bulk
355 ANAC102 knock-out -0.65 >More info -0.42 >More info Col-0 Original data GEO bulk
356 hrpA fliC 7h 0.56 >More info 0.51 >More info Mock 7h hrpA fliC Original data GEO bulk
357 IRP1-OE-Ctrl--root 0.65 >More info 0.42 >More info COL-0-Ctrl--root root Original data
358 anac017-2 H2O2 3h -0.67 >More info -0.40 >More info WT H2O2 3h 3h_H2O2 Original data GEO bulk
359 pad4-PsmES4326-24hpi -0.50 >More info -0.57 >More info Col0-PsmES4326-24hpi PsmES4326 leaf Original data GEO bulk
360 root cells epidermis 140mM NaCl 3 hours 0.69 >More info 0.38 >More info root cells epidermis standard 1 hour root cells epidermis Original data
361 toc1-1-57hr 0.71 >More info 0.36 >More info WT-untreated-57hr none seedlings aerial tissue Original data GEO bulk
362 AtMinD1 Temporal-induction 0.69 >More info 0.37 >More info Control whole plant Original data GEO bulk
363 R. solani AG2-1 0.62 >More info 0.44 >More info control Rhizoctonia solani AG2-1 whole seedling Original data GEO bulk
364 cpr5npr1 0.59 >More info 0.47 >More info WT(COL) Original data GEO bulk
365 Leaf systemic 0.66 >More info 0.40 >More info Leaf control vegetative leaf Original data GEO bulk
366 35S::RSL4 -0.67 >More info -0.39 >More info Col-0 Control root Original data GEO bulk
367 protoplasted roots pH4.6 0.74 >More info 0.32 >More info Whole root - Std pH 1H pH 4.6 for 24H Original data GEO bulk
368 npr1 sni1 SA 0.68 >More info 0.38 >More info npr1 sni1 water salicylic acid seedling Original data GEO bulk
369 embryo ABA 0.67 >More info 0.39 >More info embryo-control ABA embryo Original data GEO bulk
370 P.syringae vir 4 h (leaf) 0.60 >More info 0.46 >More info Mock 4 h (leaf) Original data Elicitor treatments
371 miR393 flg22 1h 0.55 >More info 0.50 >More info WT 0h Leaf tissue Original data GEO bulk
372 24h +Pi -0.75 >More info -0.30 >More info 24h -Pi root Original data GEO bulk
373 8-DAC chr11-1chr17-1 0.61 >More info 0.44 >More info 8-DAC Col-0 leaf explants Original data
374 sng1 0.62 >More info 0.43 >More info WT aerial region Original data GEO bulk
375 Shoot submergence 24h 0.49 >More info 0.56 >More info Shoot light control 24 h submergence in darkness whole shoot Original data GEO bulk
376 HSP90 Reduced RNAi-B1 0.49 >More info 0.56 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
377 pip3 At2g19270 RNAi 32 0.70 >More info 0.35 >More info Nd-1 whole plant Original data GEO bulk
378 WT flg22 1h 0.57 >More info 0.48 >More info WT 0h Leaf tissue Original data GEO bulk
379 2 hr Hypoxia IP RNA 0.71 >More info 0.33 >More info 2 hr Non-Stress IP RNA seedlings Original data GEO bulk
380 Nicotinamide-77hr 0.59 >More info 0.45 >More info WT-untreated-77hr nicotinamide aerial tissue Original data GEO bulk
381 root longitudinal zone-2 low sulfur -0.56 >More info -0.48 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
382 2hr transitory KNO3 PeR cell -0.65 >More info -0.39 >More info 2hr KCl control PeR cell Pericycle root cells Original data GEO bulk
383 NaCl cpctry 0.55 >More info 0.49 >More info NaCl Col Original data GEO bulk
384 cpr5npr1svi1 0.59 >More info 0.45 >More info WT(COL) Original data GEO bulk
385 root cells endodermis and quiescent center -Fe 0.82 >More info 0.22 >More info whole roots standard Original data GEO bulk
386 Shoot -K 0.52 >More info 0.52 >More info Control-shoot Original data GEO bulk
387 Wounding Stress3 h (shoot) 0.61 >More info 0.43 >More info Stress mock 3 h (shoot) Original data Stress treatments
388 K starvation (shoot) 0.52 >More info 0.52 >More info Ws (shoot) Original data GEO bulk
389 root cells stele 140mM NaCl 8 hours 0.63 >More info 0.40 >More info root cells stele standard 1 hour root cells stele Original data
390 whole roots -Fe 6 hour 0.62 >More info 0.41 >More info whole roots standard Original data GEO bulk
391 IXB induced 0.60 >More info 0.43 >More info Methanol IXB Suspension cells Original data GEO bulk
392 toc1-1-77hr 0.75 >More info 0.28 >More info WT-untreated-77hr none seedlings aerial tissue Original data GEO bulk
393 Root dark control 7h 0.69 >More info 0.34 >More info Root light control non-submerged dark condition for 7 hours whole root Original data GEO bulk
394 NaCl Col 0.70 >More info 0.33 >More info Col Original data GEO bulk
395 plant (tga2-5-6) 4h OPDA 0.67 >More info 0.36 >More info plant (tga2-5-6) 4h control Original data GEO bulk
396 HARAP aerobic -0.71 >More info -0.32 >More info WT aerobic aerobic Original data GEO bulk
397 Root dark control 24h 0.62 >More info 0.41 >More info Root light control non-submerged dark condition for 24 hours whole root Original data GEO bulk
398 root cells epidermis 140mM NaCl 48 hours 0.69 >More info 0.34 >More info root cells epidermis standard 1 hour root cells epidermis Original data
399 vtc1 (II) 0.52 >More info 0.51 >More info Col (II) rosette Original data GEO bulk
400 camta1/2/3 warm 0.58 >More info 0.45 >More info WT warm entire aerial part Original data GEO bulk
401 Elevated CO2 expanding leaf 0.62 >More info 0.41 >More info Ambient CO2 expanding leaf expanding leaf Original data
402 rosette leaves lcr 0.65 >More info 0.38 >More info rosette leaves WT Young rosette leaves 2mm to 1cm Original data GEO bulk
403 bio4-1 mutant leaves 0.45 >More info 0.58 >More info WT leaves leaves Original data GEO bulk
404 aox1a:rpoTmp untreated 0.42 >More info 0.61 >More info WT(Col0) untreated (control aox1a:rpoTmp) leaf Original data
405 sta1 0.55 >More info 0.47 >More info WT Original data GEO bulk
406 npr1 sni1 ssn2 SA -0.61 >More info -0.41 >More info npr1 sni1 SA salicylic acid seedling Original data GEO bulk
407 plant (Col-0) 4h OPDA 0.69 >More info 0.33 >More info plant (Col-0) 4h control Original data GEO bulk
408 AFB1 flg22 2h 0.52 >More info 0.50 >More info WT 0h Leaf tissue Original data GEO bulk
409 gun1-1 +lincomycin -0.64 >More info -0.38 >More info Col-0 +lincomycin Original data GEO bulk
410 WT NAA/flg 1h 0.56 >More info 0.46 >More info WT 0h Leaf tissue Original data GEO bulk
411 root cells cortex 140mM NaCl 48 hours 0.62 >More info 0.40 >More info root cells cortex standard 1 hour root cells cortex Original data
412 OPDA 4 h 0.69 >More info 0.33 >More info Col-0 Original data GEO bulk
413 csn5 (csn5a-2 csn5b) light 0.61 >More info 0.41 >More info WT light Original data GEO bulk
414 cat2-short-day 4d 0.38 >More info 0.64 >More info Col0-SD4 transferred to air (400 ppm) for 4 days in short day regime (8h light/16h dark) rosette leaf material Original data GEO bulk
415 WT +elf18 2h 0.58 >More info 0.43 >More info WT untreated elf18 Original data GEO bulk
416 roots bhlh100/101 0uM Fe 0.71 >More info 0.30 >More info roots WT 0uM Fe 0uM Fe roots Original data GEO bulk
417 Oxidative Stress 3 h (root) -0.65 >More info -0.36 >More info Stress mock 3 h (root) Original data Stress treatments
418 max4 hypocotyl 0.59 >More info 0.42 >More info wt hypocotyl hypocotyl Original data GEO bulk
419 cngc4 0.54 >More info 0.47 >More info Ws-2 Seedlings Original data GEO bulk
420 WT 24H Cold 0.66 >More info 0.35 >More info WT control Original data GEO bulk
421 Col-0 DCA 48h 0.62 >More info 0.39 >More info Col-0 MOCK 48h Original data GEO bulk
422 SCR 72hr-S 0.59 >More info 0.42 >More info SCR 0hr endodermis Original data
423 Col laser microdissected 5 dpi 0.45 >More info 0.56 >More info Col laser microdissected 5d UI LMD leaf epidermal and mesophyll cells Original data GEO bulk
424 petiole in D 0.42 >More info 0.59 >More info petiole in WL petioles Original data GEO bulk
425 siliques AtHb1 control 0.49 >More info 0.52 >More info siliques WT control control silique Original data GEO bulk
426 DC3000 7h 0.46 >More info 0.55 >More info Mock 7h DC3000 Original data GEO bulk
427 afb3-1 2h KNO3 0.72 >More info 0.28 >More info Ws 2h KNO3 2 hours of 5 mM KNO3 Arabidopsis root Original data GEO bulk
428 WT drought 0.62 >More info 0.38 >More info WT control All aerial tissue Original data GEO bulk
429 WT Red light 18h -0.57 >More info -0.43 >More info WT Dark 18h deetiolated seedling Original data GEO bulk
430 ahg1-1 0.58 >More info 0.42 >More info ABA control Original data GEO bulk
431 phyB Rc50 0.51 >More info 0.49 >More info WT(Ler) Rc50 Original data GEO bulk
432 ahg3-1 0.55 >More info 0.45 >More info ABA control Original data GEO bulk
433 ERF96OE 0.54 >More info 0.46 >More info WT leaf Original data
434 Dark 6h ivd 0.73 >More info 0.27 >More info 0h ivd Original data
435 root cells endodermis 140mM NaCl 48 hours 0.65 >More info 0.35 >More info root cells endodermis standard 1 hour root cells endodermis Original data
436 P.syringae AvrRpt2 4 h (leaf) 0.56 >More info 0.44 >More info Mock 4 h (leaf) Original data Elicitor treatments
437 AAF-OX 0.70 >More info 0.30 >More info Col-0 Rosette leaf Original data GEO bulk
438 Elevated CO2 fully expanded leaf 0.64 >More info 0.35 >More info Ambient CO2 fully expanded leaf fully expanded leaf Original data
439 ani1 T0.5 -0.61 >More info -0.38 >More info WT T0.5 root tissue Original data GEO bulk
440 stn7-1 -0.61 >More info -0.38 >More info Col-0 rosette leaves Original data GEO bulk
441 Ws 100mM NaCl 0.54 >More info 0.45 >More info Ws 0mM NaCl 100mM NaCl leaf Original data GEO bulk
442 Ws leaf 100mM NaCl 0.54 >More info 0.45 >More info Ws leaf 0mM NaCl leaf Original data GEO bulk
443 WT-16ºC -0.71 >More info -0.28 >More info WT-23ºC Original data GEO bulk
444 AtLysM RLK1 mutant chitooctaose -0.57 >More info -0.42 >More info WT chitooctaose Original data GEO bulk
445 aox1a(line) untreated -0.59 >More info -0.40 >More info WT(Col0) untreated (control aox1a) leaf Original data
446 root longitudinal zone-4 NaCl 0.52 >More info 0.47 >More info root longitudinal zone-4 Original data GEO bulk
447 Root GLU1-KO -0.63 >More info -0.36 >More info Root Col(0) roots Original data GEO bulk
448 iae1 -0.74 >More info -0.25 >More info B179 Original data GEO bulk
449 SCR-GR Time 3H Dex 0.63 >More info 0.36 >More info SCR-GR Time 0H Dex Dex media for 3 hours Original data GEO bulk
450 gun1gun5 far-red pretreated -0.48 >More info -0.51 >More info WT far-red pretreated Original data GEO bulk
451 S14-150 0.36 >More info 0.63 >More info wt Original data GEO bulk
452 Seedling-HeatStressed TOTALmRNA 0.45 >More info 0.54 >More info Seedling-control TOTALmRNA seedling Original data
453 irradiated leaf (cmt 5d) 0.54 >More info 0.44 >More info control leaf (cmt 5d) rosette leaf only Original data GEO bulk
454 upb1-1 elongation zone -0.66 >More info -0.32 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
455 seedling h S Exp -0.58 >More info -0.40 >More info seedling -S Exp seedling Original data
456 cop1 Seedling BL+ABA 0.72 >More info 0.26 >More info WT Seedling BL+ABA Original data GEO bulk
457 root cells columella root cap -Fe 0.84 >More info 0.14 >More info whole roots standard Original data GEO bulk
458 Whole root - S 3H 0.55 >More info 0.43 >More info Whole root - S 0H Original data GEO bulk
459 atmospheric CO2 low Mg shoot 0.64 >More info 0.34 >More info atmospheric CO2 normal Mg shoot Shoot Original data
460 M6PR transgenic leaf 0mM NaCl 0.54 >More info 0.44 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
461 cell culture 4 h phytoprostane A1 0.40 >More info 0.58 >More info cell culture 4 h control Original data GEO bulk
462 amiRAP aerobic -0.44 >More info -0.54 >More info WT aerobic aerobic Original data GEO bulk
463 root cells epidermis 140mM NaCl 8 hours 0.68 >More info 0.29 >More info root cells epidermis standard 1 hour root cells epidermis Original data
464 arr-dmso-sample 0.69 >More info 0.28 >More info Wt-dmso-sample seedling Original data
465 Col-0 2h NAA 0.74 >More info 0.23 >More info Col-0 6h MOCK Original data GEO bulk
466 protoplasts T1 [flg22] 0.58 >More info 0.39 >More info protoplasts T1 [CPK] mesophyll protoplasts Original data GEO bulk
467 rhd2 0.71 >More info 0.26 >More info WT Small excised segments of primary root tissue corresponding to root-hair elongation zone Original data GEO bulk
468 35S::ERF104 H2O 4h 0.74 >More info 0.23 >More info Col-0 H2O 4h Original data GEO bulk
469 Leafminer systemically damaged thaliana seedlings 0.66 >More info 0.31 >More info Undamaged thaliana seedlings systemically damaged by leafminer leaves Original data GEO bulk
470 Blue Light 45 min -0.47 >More info -0.50 >More info White Light 45min Original data Light treatments
471 sfr6 drought -0.46 >More info -0.51 >More info WT drought All aerial tissue Original data GEO bulk
472 C58 3hpi 0.40 >More info 0.56 >More info Reference 3hpi wounded inflorescence stalk segments Original data GEO bulk
473 pho1 0.60 >More info 0.36 >More info Col2WT Original data GEO bulk
474 M6PR transgenic 0mM NaCl 0.60 >More info 0.36 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
475 OsRLCK253 expressing -0.71 >More info -0.25 >More info WT seedlings Original data GEO bulk
476 seedling 1.5h after HZE atm-1 0.64 >More info 0.32 >More info seedling day 1 unirradiated atm-1 1.5h Original data
477 Ts5 roots 2hr KCl control 0.67 >More info 0.29 >More info Col0 roots 2hr KCl control root Original data GEO bulk
478 Col ozone 2d 0.50 >More info 0.46 >More info Col clean-air 2d ozone Original data GEO bulk
479 HSP90 Reduced RNAi-A2 0.46 >More info 0.50 >More info HSP90 Reduced Col-0 CS60000 All aerial tissue Original data GEO bulk
480 rao1-1 3h antimycin A -0.55 >More info -0.40 >More info Col-Luc WT 3h antimycin A 50 µM antimycin A for 3 hours whole green tissue Original data GEO bulk
481 Root submergence 24h 0.56 >More info 0.39 >More info Root light control 24 h submergence in darkness whole root Original data GEO bulk
482 root endodermis and quiescent center 40 mM NaCl 0.56 >More info 0.39 >More info root endodermis and quiescent center Original data GEO bulk
483 Kas-1 -Fe 48h -0.62 >More info -0.33 >More info Kas-1 +Fe 24h roots Original data GEO bulk
484 Kas -Fe 48h Roots -0.62 >More info -0.33 >More info Kas +Fe 24h Roots Original data GEO bulk
485 eds16 whole leaf 6hpi -0.53 >More info -0.42 >More info Col whole leaf 6hpi whole leaf Original data GEO bulk
486 ceh1 mutant 0.51 >More info 0.44 >More info Parent line Original data
487 root cells stele 140mM NaCl 1 hour 0.61 >More info 0.34 >More info root cells stele standard 1 hour root cells stele Original data
488 root control pPEP 0.59 >More info 0.36 >More info root control total control root Original data GEO bulk
489 seedling 1.5h after Gamma WT 0.59 >More info 0.36 >More info seedling day 1 unirradiated WT 1.5h Original data
490 OXUPB1-2 elongation zone 0.62 >More info 0.33 >More info Col-0 elongation zone Seedling root elongation zone Original data GEO bulk
491 pmr4-1 powdery mildew 0.57 >More info 0.38 >More info WT powdery mildew uninoculated Original data GEO bulk
492 HRE1-RNAi20 normoxia -0.53 >More info -0.42 >More info Col upon normoxia normoxia seedling roots Original data GEO bulk
493 CAX1/CAX3 mutant 0.55 >More info 0.39 >More info Col whole plant Original data GEO bulk
494 Col leaf 100mM NaCl 0.61 >More info 0.33 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
495 Col leaf 100mM NaCl 0.61 >More info 0.33 >More info Col leaf 0mM NaCl leaf Original data GEO bulk
496 Pst-DC3000(avrRpm1)-4hpi 0.63 >More info 0.31 >More info Pst-DC3000-4hpi Original data GEO bulk
497 Col 100mM NaCl 0.61 >More info 0.33 >More info Col 0mM NaCl 100mM NaCl leaf Original data GEO bulk
498 35S::ZAT12 0.69 >More info 0.25 >More info gl1 Original data GEO bulk
499 1.5 hr ammonium 0.59 >More info 0.35 >More info immediately prior to nitrogen addtion roots from hydroponically grown plants Original data GEO bulk
500 Nuclear GSH1 0.51 >More info 0.43 >More info Cytoplasmic GSH1 Control Original data GEO bulk
501 2hr continuous KNO3 SR cell 0.72 >More info 0.22 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
502 root longitudinal zone-4 pH 4.6 0.58 >More info 0.36 >More info root longitudinal zone-4 pH 5.7 Original data GEO bulk
503 WT (Col-0) inflorescence drought day 4 0.57 >More info 0.37 >More info WT (Col-0) inflorescence well-watered day 4 Unopen flower buds Original data GEO bulk
504 mkk1/mkk2 control rep 0.42 >More info 0.52 >More info Col-0 Time 0 rep Original data GEO bulk
505 root endodermis and quiescent center pH4.6 0.43 >More info 0.51 >More info root endodermis and quiescent center pH5.7 Original data GEO bulk
506 root columella root cap pH4.6 0.35 >More info 0.59 >More info root columella root cap pH5.7 Original data GEO bulk
507 Col-0 INA 48h 0.55 >More info 0.38 >More info Col-0 MOCK 48h Original data GEO bulk
508 pXVE:HA-EDM2-a untreated -0.54 >More info -0.39 >More info Col-0 untreated seedlings Original data GEO bulk
509 sid2-1 cold -0.56 >More info -0.37 >More info WT cold 3 week cold entire aerial part Original data GEO bulk
510 SCR 96hr-S 0.55 >More info 0.38 >More info SCR 0hr endodermis Original data
511 Shoot apex inflorescence (after bolting) 0.28 >More info 0.65 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
512 RRE2 Chitin 0.57 >More info 0.36 >More info Chitin Original data GEO bulk
513 seedling 6h after HZE WT 0.57 >More info 0.36 >More info seedling day 1 unirradiated WT 6h Original data
514 ARF10 -0.52 >More info -0.41 >More info Col-0 Original data GEO bulk
515 camta1/3 warm 0.51 >More info 0.42 >More info WT warm entire aerial part Original data GEO bulk
516 root cells cortex 140mM NaCl 1 hour 0.58 >More info 0.35 >More info root cells cortex standard 1 hour root cells cortex Original data
517 shoots WT 0uM Fe 0.61 >More info 0.32 >More info shoots WT 100uM Fe 0uM Fe shoots Original data GEO bulk
518 downy mildew cotyledons late stage 0.58 >More info 0.35 >More info mock inoculated Cotyledons Original data GEO bulk
519 control leaf (cmt 1d) -0.60 >More info -0.33 >More info control leaf (WT 1d) rosette leaf only Original data GEO bulk
520 2hr transitory KNO3 SR cell 0.73 >More info 0.20 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
521 GiantCell Root -0.59 >More info -0.34 >More info Control Root laser captured giant cells Original data GEO bulk
522 edr1 36 h powdery mildew 0.43 >More info 0.50 >More info Col-0 36 h powdery mildew Original data GEO bulk
523 35S::Zat12+H2O2 0.55 >More info 0.37 >More info WT+H2O2 H2O2 Original data GEO bulk
524 root cells stele -Fe 0.78 >More info 0.14 >More info whole roots standard Original data GEO bulk
525 Laer Flg22 1h 0.50 >More info 0.42 >More info Laer Control leaf discs Original data GEO bulk
526 PsJN -0.59 >More info -0.33 >More info Control inoculated with the PGPR bacterial model Burkholderia phytofirmans PsJN Plantlet Original data GEO bulk
527 clf-28 swn-7 0.62 >More info 0.30 >More info Col whole plant Original data GEO bulk
528 sfr6 control -0.51 >More info -0.41 >More info WT control All aerial tissue Original data GEO bulk
529 35SpBVR3 0.50 >More info 0.42 >More info WT Original data GEO bulk
530 Salt Stress 24 h (root) 0.42 >More info 0.50 >More info Stress mock 24 h (root) Original data Stress treatments
531 msh1 recA3 untreated 0.30 >More info 0.62 >More info WT untreated above-ground parts Original data GEO bulk
532 pif3 Dark 1h -0.78 >More info -0.13 >More info WT Dark 1h etiolated seedling Original data GEO bulk
533 camta2/3 warm 0.51 >More info 0.40 >More info WT warm entire aerial part Original data GEO bulk
534 2hr continuous KNO3 PrR cell 0.66 >More info 0.25 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
535 rli 0.54 >More info 0.37 >More info WT whole plant Original data GEO bulk
536 root hypoxia pPEP 0.59 >More info 0.32 >More info root hypoxia total hypoxia root Original data GEO bulk
537 Tsu-1 -Fe 48h 0.61 >More info 0.30 >More info Tsu-1 +Fe 24h roots Original data GEO bulk
538 mutant acs4A (single mutant) -0.70 >More info -0.21 >More info col control (single mutant) Original data GEO bulk
539 pip3 At2g19270 TDNA 6h-5 0.71 >More info 0.20 >More info Col-0 whole plant Original data GEO bulk
540 root control pRPL11C 0.57 >More info 0.34 >More info root control total control root Original data GEO bulk
541 Tsu -Fe 48h Roots 0.61 >More info 0.30 >More info Tsu +Fe 24h Roots Original data GEO bulk
542 DC3000 24h 0.62 >More info 0.29 >More info Mock 24h DC3000 Original data GEO bulk
543 whole roots -Fe 24hour 0.63 >More info 0.27 >More info whole roots standard Original data GEO bulk
544 whole roots -Fe 3 hour 0.73 >More info 0.17 >More info whole roots standard Original data GEO bulk
545 L17 phyA line -0.53 >More info -0.37 >More info WT seedling Original data GEO bulk
546 chalazal seed coat heart stage 0.55 >More info 0.35 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
547 Fe starvation 24 h 0.63 >More info 0.27 >More info Control Original data GEO bulk
548 A. lyrata -0.62 >More info -0.28 >More info A. thaliana mature leaves before flowering Original data GEO bulk
549 Fe starvation 3 h 0.73 >More info 0.17 >More info Control Original data GEO bulk
550 Laer Flg22 2h 0.39 >More info 0.51 >More info Laer Control leaf discs Original data GEO bulk
551 IRP1-OE-Fe--shoot 0.58 >More info 0.32 >More info COL-0-Fe--shoot shoot Original data
552 Col-0 SA 0.60 >More info 0.30 >More info Col-0 Original data GEO bulk
553 ga1-3 1h GA4 -0.59 >More info -0.31 >More info ga1-3 1h water shoots Original data GEO bulk
554 rdr6-15 -0.59 >More info -0.31 >More info Col-0 Original data GEO bulk
555 35S::ERF104 Flg22 4h 0.29 >More info 0.61 >More info 35S::ERF104 H2O 4h Original data GEO bulk
556 root cells epidermis 140mM NaCl 32 hours 0.64 >More info 0.25 >More info root cells epidermis standard 1 hour root cells epidermis Original data
557 35S::MBF1c 0.50 >More info 0.39 >More info control Original data GEO bulk
558 cpr5 0.52 >More info 0.37 >More info WT(COL) Original data GEO bulk
559 Uniconazole 12 h 0.36 >More info 0.53 >More info Mock 12 h Original data Effect of GA inhibitors on seedlings
560 seedling 12h after Gamma WT -0.71 >More info -0.18 >More info seedling day 1 unirradiated WT 12h Original data
561 whole roots -Fe 12 hour 0.69 >More info 0.20 >More info whole roots standard Original data GEO bulk
562 toc1-1-93hr 0.69 >More info 0.20 >More info WT-untreated-93hr none seedlings aerial tissue Original data GEO bulk
563 FLIGHT TAGES 2B plate6 HYPOCOTYLS 0.57 >More info 0.32 >More info GROUND CONTROL TAGES 2B plate6 HYPOCOTYLS plant tissue Original data
564 GR-REV 60min 0.71 >More info 0.18 >More info Col 60min Original data GEO bulk
565 Cor hrpS 10h 0.32 >More info 0.56 >More info Mock 10h Cor hrpS Original data GEO bulk
566 20d after anthesis 0.51 >More info 0.37 >More info 10d after anthesis senescing pod tissues of 20 days after anthesis Original data GEO bulk
567 Root P recovery 0.74 >More info 0.14 >More info Root -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
568 Root submergence 7h 0.63 >More info 0.25 >More info Root light control 7 h submergence in darkness whole root Original data GEO bulk
569 Imbibed 1 h (seed) 0.17 >More info 0.71 >More info Dry seed Original data Time course of early seed germination
570 Shoot dark control 24h 0.37 >More info 0.51 >More info Shoot light control 24 h non-submerged dark condition whole shoot Original data GEO bulk
571 3x(m) 0.27 >More info 0.61 >More info 2x two week old seedlings Original data
572 root cells -Fe 0.82 >More info 0.06 >More info whole roots standard Standard media transferred to -Fe media for 24 hours prior to harvesting tissue Original data GEO bulk
573 csn3-1 light 0.55 >More info 0.32 >More info WT light Original data GEO bulk
574 root hypoxia pWOL 0.55 >More info 0.32 >More info root hypoxia total hypoxia root Original data GEO bulk
575 Ws HS 0.53 >More info 0.34 >More info Ws control heat shocked seedling Original data GEO bulk
576 Norflurazon 0.32 >More info 0.55 >More info Col-0 Original data GEO bulk
577 Norflurazon 0.32 >More info 0.55 >More info WT-Contrl a herbicide (Norflurazon) seedling Original data GEO bulk
578 root cells epidermis 140mM NaCl 20 hours 0.61 >More info 0.26 >More info root cells epidermis standard 1 hour root cells epidermis Original data
579 aphid infested 0.51 >More info 0.36 >More info control aphid infested Leaves Original data GEO bulk
580 WT +Pep2 2h 0.52 >More info 0.35 >More info WT untreated Pep2 Original data GEO bulk
581 aphid infested 0.51 >More info 0.36 >More info CTR Original data GEO bulk
582 Col whole leaf 7dpi 0.30 >More info 0.57 >More info Col whole leaf 7d UI whole leaf Original data GEO bulk
583 Cor 24h 0.55 >More info 0.31 >More info Mock 24h Cor Original data GEO bulk
584 Bur-0-30min IAA 0.68 >More info 0.18 >More info Bur-0h IAA whole plant Original data GEO bulk
585 seed germinating in countinuous light 24h SL 0.19 >More info 0.67 >More info Control for tissue data seed Original data GEO bulk
586 pip3 At2g19270 RNAi 24 0.62 >More info 0.24 >More info Nd-1 whole plant Original data GEO bulk
587 root cells stele 140mM NaCl 48 hours 0.60 >More info 0.26 >More info root cells stele standard 1 hour root cells stele Original data
588 eto1-4 + AVG 0.64 >More info 0.22 >More info eto1-4 whole seedling Original data GEO bulk
589 Mutant iaa17-6 (IAA) 0.76 >More info 0.10 >More info Col (IAA) Original data GEO bulk
590 vte2 leaves 48h LT 0.58 >More info 0.28 >More info Col leaves 48h LT 48h 9-11th adult leaves Original data
591 -Sulfate 24 h 0.21 >More info 0.65 >More info Mock 24 h (1500uM sulfate) Original data Response to sulfate limitation
592 myb61 xylem 0.57 >More info 0.29 >More info wt xylem xylem Original data GEO bulk
593 etiolated cop1BBX22-GFPox -0.56 >More info -0.29 >More info etiolated Col-0 whole seedlings Original data GEO bulk
594 root cells epidermis and lateral root cap -Fe 0.81 >More info 0.04 >More info whole roots standard Original data GEO bulk
595 tunicamycin -0.30 >More info -0.55 >More info DMF Original data GEO bulk
596 Brz220 3 h 0.59 >More info 0.26 >More info Mock 3 h Original data Effect of brassinosteroid inhibitors on seedlings
597 pericycle control 0.58 >More info 0.27 >More info Control for tissue data mock pericycle Original data GEO bulk
598 RRE1 Chitin 0.62 >More info 0.23 >More info Chitin Original data GEO bulk
599 atmospheric CO2 high Mg shoot 0.58 >More info 0.27 >More info atmospheric CO2 normal Mg shoot Shoot Original data
600 auxin and brassinazole seedlings 0.59 >More info 0.26 >More info auxin seedlings Original data GEO bulk
601 shoot control pGL2 0.64 >More info 0.21 >More info shoot control total Original data GEO bulk
602 FLIGHT TAGESB plate 0.71 >More info 0.14 >More info GROUND CONTROL TAGESB plate Original data
603 npr1-3 DCA 48h 0.22 >More info 0.63 >More info npr1-3 MOCK 48h Original data GEO bulk
604 seedling 12h after Gamma atm-1 -0.66 >More info -0.18 >More info seedling day 1 unirradiated atm-1 12h Original data
605 OXUPB1-2 meristematic zone 0.64 >More info 0.20 >More info Col-0 meristematic zone Seedling root meristem zone Original data GEO bulk
606 root control pGL2 0.52 >More info 0.32 >More info root control total control root Original data GEO bulk
607 wnk8-2 untreated -0.55 >More info -0.29 >More info Col-0 untreated seedlings Original data GEO bulk
608 mutant acs6E (single mutant) -0.79 >More info -0.05 >More info col control (single mutant) Original data GEO bulk
609 Mutant ein2(leaf) -0.28 >More info -0.56 >More info Col-0 (leaf) Original data GEO bulk
610 tor mutant 0.59 >More info 0.25 >More info WT (Col) none seedlings Original data GEO bulk
611 chalazal seed coat mature green 0.62 >More info 0.22 >More info Control for tissue data chalazal seed coat captured by LCM Original data GEO bulk
612 COL-0-Fe--root 0.57 >More info 0.27 >More info COL-0-Ctrl--root root Original data
613 TAMM27 roots 2hr KNO3 nitrogen 0.69 >More info 0.15 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
614 NFA8 roots 2hr KCl control 0.61 >More info 0.23 >More info Col0 roots 2hr KCl control root Original data GEO bulk
615 root - 01% oxygen - 48h 0.26 >More info 0.58 >More info root - 21% oxygen - 48h Original data GEO bulk
616 light -0.65 >More info -0.18 >More info dark light seedling Original data GEO bulk
617 Elevated CO2 AMPLE N DAY 0.53 >More info 0.30 >More info Ambient CO2 AMPLE N DAY Youngest Most Fully Expanded Leaf Original data
618 toc1-1-89hr 0.66 >More info 0.17 >More info WT-untreated-89hr none seedlings aerial tissue Original data GEO bulk
619 root hypoxia pRPL11C 0.63 >More info 0.20 >More info root hypoxia total hypoxia root Original data GEO bulk
620 root control pSultr2:2 0.50 >More info 0.33 >More info root control total control root Original data GEO bulk
621 Root wt CLE10 0.50 >More info 0.33 >More info Root wt CLE25 root tip Original data GEO bulk
622 gpa1 +ABA GC -0.30 >More info -0.53 >More info Col-0 +ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
623 Ba1 UV 0.61 >More info 0.22 >More info Ba1 mock UV seedling Original data
624 Laer pretreat GA Flg22 1h 0.12 >More info 0.71 >More info Laer pretreat water control leaf discs Original data GEO bulk
625 root control p35S 0.55 >More info 0.27 >More info root control total control root Original data GEO bulk
626 21h-DC3000 avrRpm1 -0.54 >More info -0.28 >More info 21h-DC3000 leaves Original data GEO bulk
627 AtMYB30-ox 90-105 min Xanthomonas 0.56 >More info 0.26 >More info WT 90-105 min Xanthomonas Original data GEO bulk
628 2hr KCl control SR cell 0.70 >More info 0.12 >More info 2hr KCl control PrR cell Stele root cells Original data GEO bulk
629 SOS1 0mM NaCl 0.57 >More info 0.25 >More info Ws 0mM NaCl 0mM NaCl leaf Original data GEO bulk
630 2hr transitory KNO3 PrR cell 0.72 >More info 0.10 >More info 2hr KCl control PrR cell Protoplasted root cells Original data GEO bulk
631 AtHB8 0.69 >More info 0.13 >More info Control for tissue data shoot apical meristem Original data GEO bulk
632 iron minus 0 h 0.79 >More info 0.02 >More info iron +0 h root Original data GEO bulk
633 rrd1 IBA -0.63 >More info -0.18 >More info wild type IBA 12h 0.5 mg/L IBA cultured explant Original data GEO bulk
634 WT (Ler) TSA 0.51 >More info 0.30 >More info WT (Ler) CK0 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and 100 ng/ml TSA. tissue culture Original data GEO bulk
635 abh1 -ABA 0.26 >More info 0.55 >More info Col-0 -ABA Original data GEO bulk
636 S17 0.71 >More info 0.10 >More info Control for tissue data shoot apical meristem Original data GEO bulk
637 Col-0 Root 100 mM ATP 30 min 0.60 >More info 0.20 >More info Col-0 Root MES buffer 30 min Roots of 5 day-old seedlings Original data
638 DUO1 induced 24h 0.60 >More info 0.20 >More info 24hr-not-induced whole plant Original data GEO bulk
639 shoot hypoxia pSUC2 0.54 >More info 0.26 >More info shoot hypoxia total Original data GEO bulk
640 root control pWOL 0.52 >More info 0.28 >More info root control total control root Original data GEO bulk
641 DC3000 2 h (leaf) 0.30 >More info 0.50 >More info Mock 2 h (leaf) Original data Pseudomonas syringae pv. tomato or pv. phaseolicola infection
642 noa1-2 0.71 >More info 0.09 >More info Col-0 whole seedlings Original data GEO bulk
643 Mutant arf2-6 (IAA) 0.60 >More info 0.19 >More info Col (IAA) Original data GEO bulk
644 anti-sense for AtAOX1a 0.52 >More info 0.27 >More info WT Original data GEO bulk
645 10min Reillumination IP RNA -0.64 >More info -0.15 >More info 1h Dark IP RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
646 embryo proper linear-cotyledon -0.54 >More info -0.25 >More info whole seeds linear-cotyledon Original data GEO bulk
647 aux1 mutant roots air -0.63 >More info -0.16 >More info roots IAA Original data GEO bulk
648 glk1 glk2 GLK1-GR +DEX 24h -0.69 >More info -0.10 >More info glk1 glk2 GLK1-GR mock 24h dexamethasone whole seedlings Original data GEO bulk
649 CLO 4mM 0.61 >More info 0.17 >More info untreated 4 weeks old at time of treatment whole leaf Original data GEO bulk
650 whole roots 140 mM NaCl 4 hour 0.53 >More info 0.25 >More info whole roots standard Original data GEO bulk
651 Col-0 24hpi A. brassicicola 0.76 >More info 0.02 >More info Col-0 24hpi mock 3rd-5th true leaves Original data
652 PIF5ox high R/FR 0.58 >More info 0.20 >More info Col-0 high R/FR high R/FR seedlings Original data GEO bulk
653 WT(Ler) Rc50 -0.62 >More info -0.16 >More info WT(Ler) Dark Original data GEO bulk
654 Col whole leaf 5 dpi 0.27 >More info 0.51 >More info Col whole leaf 5d UI whole leaf Original data GEO bulk
655 miR393 0h -0.18 >More info -0.60 >More info WT 0h Leaf tissue Original data GEO bulk
656 dsr1 SA Treated 0.57 >More info 0.21 >More info SA Whole seedling Original data GEO bulk
657 Col dryseed 0.57 >More info 0.21 >More info Control for tissue data dry seeds Original data
658 root longitudinal zone-4 -Fe 0.57 >More info 0.21 >More info root longitudinal zone-4 standard Original data GEO bulk
659 vte1-1 1d vernalization 0.57 >More info 0.21 >More info WT 1d vernalization Original data GEO bulk
660 CCA14 dark early 0.66 >More info 0.11 >More info Col dark early Original data GEO bulk
661 Callus 0.53 >More info 0.24 >More info Control for tissue data callus Original data GEO bulk
662 arr10 arr12 tZ 0.61 >More info 0.16 >More info tZ trans-zeatin roots Original data GEO bulk
663 grf1/grf2/grf3 0.50 >More info 0.27 >More info WS Original data GEO bulk
664 root hypoxia p35S 0.52 >More info 0.25 >More info root hypoxia total hypoxia root Original data GEO bulk
665 DUO1 induced 12h 0.64 >More info 0.13 >More info 12hr-not-induced whole plant Original data GEO bulk
666 Col whole leaf 3dpi 0.27 >More info 0.50 >More info Col whole leaf 0h UI whole leaf Original data GEO bulk
667 myb3 myb3r4d 0.17 >More info 0.60 >More info Wild type Col0-9d whole seedlings Original data GEO bulk
668 irradiated leaf (cmt 1d) 0.19 >More info 0.58 >More info control leaf (cmt 1d) rosette leaf only Original data GEO bulk
669 mpk6-ko H2O 4h 0.69 >More info 0.08 >More info Col-0 H2O 4h Original data GEO bulk
670 erf104-ko H2O 4h 0.69 >More info 0.08 >More info Col-0 H2O 4h Original data GEO bulk
671 Root -P -0.64 >More info -0.12 >More info Root Mock P_starvation 10-day Phosphate starvation Original data GEO bulk
672 ex1ex2flu dark 8hours/30 minute light 0.51 >More info 0.25 >More info col dark 8hours/30 minute light Original data GEO bulk
673 GR-REV 30min 0.58 >More info 0.18 >More info Col 30min Original data GEO bulk
674 AtLysM RLK1 mutant water 0.51 >More info 0.25 >More info WT water Original data GEO bulk
675 line J1551-5 days control + 2 days salt s 0.56 >More info 0.20 >More info line J1551-7 days-control Original data
676 piffq FR 3h -0.65 >More info -0.11 >More info WT FR 3h whole seedling Original data GEO bulk
677 atmyc2 Seedling BL+ABA -0.52 >More info -0.24 >More info WT Seedling BL+ABA Original data GEO bulk
678 shoot hypoxia pCER5 0.64 >More info 0.12 >More info shoot hypoxia total Original data GEO bulk
679 Sepals stage15 0.59 >More info 0.17 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
680 seed during stratification 12 h S 0.52 >More info 0.24 >More info Control for tissue data seed Original data GEO bulk
681 WT Rc50 -0.62 >More info -0.14 >More info WT Dark red light whole seedling Original data GEO bulk
682 chl1-12 10mM NH4NO3 -0.58 >More info -0.18 >More info col 10mM NH4NO3 Root Original data
683 chalazal seed coat 0.56 >More info 0.20 >More info Control for tissue data Original data GEO bulk
684 rdr6-11 ein5-1 ski2-3 0.59 >More info 0.17 >More info Col-0 aerial tissue Original data
685 roots bhlh100/101 100uM Fe 0.64 >More info 0.12 >More info roots WT 100uM Fe 100uM Fe roots Original data GEO bulk
686 dorn1-1 Root 100 mM ATP 30 min -0.20 >More info -0.56 >More info Col-0 Root 100 mM ATP 30 min Roots of 5 day-old seedlings Original data
687 seedling 3h after HZE WT 0.73 >More info 0.02 >More info seedling day 1 unirradiated WT 3h Original data
688 Cold Stress 24 h (root) 0.55 >More info 0.20 >More info Stress mock 24 h (root) Original data Stress treatments
689 WT 6H Cold 0.65 >More info 0.10 >More info WT control Original data GEO bulk
690 roottip hypoxia p35S 0.65 >More info 0.10 >More info roottip hypoxia total hypoxia roottip Original data GEO bulk
691 ice1 3H Cold 0.25 >More info 0.50 >More info WT 3H Cold Original data GEO bulk
692 rao2 AntimycinA 3h -0.22 >More info -0.53 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
693 piffq FR 1h -0.66 >More info -0.08 >More info WT FR 1h whole seedling Original data GEO bulk
694 root cells endodermis 140mM NaCl 1 hour 0.50 >More info 0.24 >More info root cells endodermis standard 1 hour root cells endodermis Original data
695 Col 0 2h KNO3 -0.59 >More info -0.15 >More info Col 0 2h KCl 5 mM KNO3 root Original data GEO bulk
696 pkl Mutant Uniconazole -0.71 >More info -0.03 >More info pkl Mutant mock Original data GEO bulk
697 toc1-1-61hr 0.66 >More info 0.08 >More info WT-untreated-61hr none seedlings aerial tissue Original data GEO bulk
698 nas4x leaves - Fe -0.18 >More info -0.56 >More info WT leaves - Fe Leaves Original data GEO bulk
699 anac017-1 AntimycinA 3h -0.19 >More info -0.55 >More info WT AntimycinA 3h 3h_AntimycinA Original data GEO bulk
700 rsa3-1 Na 24h 0.52 >More info 0.21 >More info WT Na 24h 120 mM NaCl for 24 h whole seedlings Original data GEO bulk
701 INA 0.59 >More info 0.14 >More info CK INA seedling Original data
702 Shoot submergence 7h 0.73 >More info -0.00 >More info Shoot light control 7 h submergence in darkness whole shoot Original data GEO bulk
703 elevated CO2 high Mg root -0.58 >More info -0.15 >More info atmospheric CO2 high Mg root Root Original data
704 eds16 laser microdissected 5 dpi -0.57 >More info -0.16 >More info Col laser microdissected 5 dpi LMD leaf epidermal and mesophyll cells Original data GEO bulk
705 CMV-A2b mutant 0.50 >More info 0.23 >More info Mock-At Aerial tissues Original data GEO bulk
706 glk1 glk2 GLK1-GR +DEX 4h 0.55 >More info 0.18 >More info glk1 glk2 GLK1-GR mock 4h dexamethasone whole seedlings Original data GEO bulk
707 mutant acs2B (single mutant) -0.75 >More info 0.02 >More info col control (single mutant) Original data GEO bulk
708 jkd-4 QC 0.51 >More info 0.22 >More info Col-0 QC Quiescent Center Original data
709 atmospheric CO2 low Mg root -0.60 >More info -0.13 >More info atmospheric CO2 normal Mg root Root Original data
710 gun1-9 control 0.50 >More info 0.23 >More info Col-0 control Original data GEO bulk
711 NFA8 roots 2hr KNO3 nitrogen 0.55 >More info 0.17 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
712 pif3 Dark 0h -0.68 >More info -0.04 >More info WT Dark 0h etiolated seedling Original data GEO bulk
713 elf3-7-16ºC -0.68 >More info -0.04 >More info WT-16ºC Original data GEO bulk
714 WT(Ler) Rc15 -0.61 >More info -0.11 >More info WT(Ler) Dark Original data GEO bulk
715 35S-MIF1 dark grown -0.62 >More info -0.10 >More info Dark-grown WT control Original data GEO bulk
716 C2H2 ZF TDNA mutant -0.71 >More info -0.01 >More info Col-WT mature pollen Original data GEO bulk
717 ckh1 CK25 0.50 >More info 0.22 >More info WT (Ler) CK25 cultured for 3 days on CIM containing 100 ng/ml 2 4-D and low level (25 ng/ml) of kinetin. tissue culture Original data GEO bulk
718 agb1 gpa1 -ABA GC -0.22 >More info -0.50 >More info Col-0 -ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
719 aux1 mutant roots ethylene 0.22 >More info 0.50 >More info roots air Original data GEO bulk
720 -Sulfate 2 h 0.56 >More info 0.15 >More info Mock 2 h (1500uM sulfate) Original data Response to sulfate limitation
721 Transgenic LEC2GR Seedling 1h Dex 0.57 >More info 0.14 >More info Transgenic LEC2GR Seedling 0h Dex Original data GEO bulk
722 roots WT 0uM Fe 0.64 >More info 0.07 >More info roots WT 100uM Fe 0uM Fe roots Original data GEO bulk
723 mkk1 24h BTH rep -0.58 >More info -0.13 >More info Col-0 24h BTH rep Original data GEO bulk
724 Salicylic Acid 3 h 0.53 >More info 0.18 >More info Mock 3 h Original data Effect of other inhibitors on seedlings
725 HMG 0.62 >More info 0.09 >More info Control for tissue data shoot apical meristem Original data GEO bulk
726 Stem tissue 5 days NAA 0.10 >More info 0.61 >More info Stem tissue T0 Stem tissue with NAA treatment Stem tissue with NAA treatment Original data GEO bulk
727 aerial organ callus inducing medium 12 h 0.21 >More info 0.50 >More info aerial organ callus inducing medium 0 h 12 hours after incubating on callus inducing medium aerial organ explants Original data GEO bulk
728 Col -Fe 0.54 >More info 0.16 >More info Col-es root Original data GEO bulk
729 ALC Toc1 light-light Mock -0.54 >More info -0.16 >More info Col light-light Mock no ethanol Original data GEO bulk
730 stele pSHR 0h BL 0.54 >More info 0.16 >More info WR 35S 0h BL brassinosteroid root Original data
731 seed coat mature green 0.55 >More info 0.15 >More info Control for tissue data seed coat captured by LCM Original data GEO bulk
732 pnp1-1 1wk -P 0.50 >More info 0.20 >More info WT 1wk -P No phosphate medium seedlings without roots Original data GEO bulk
733 Shoot P recovery 0.58 >More info 0.12 >More info Shoot -P Recovery 10-day Phosphate starvation then transferred to full-strength MGRL medium for 3 days Original data GEO bulk
734 Senescing leaf 0.58 >More info 0.12 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
735 WR 35S 8h BL 0.51 >More info 0.19 >More info WR 35S 0h BL brassinosteroid root Original data
736 msh1 recA3 heat shock 0.19 >More info 0.51 >More info WT heat shock above-ground parts Original data GEO bulk
737 hira-protoplast 0.65 >More info 0.04 >More info WT-protoplast protoplast Original data
738 WT Uniconazole -0.67 >More info -0.02 >More info WT mock Original data GEO bulk
739 phyABCDE Dark 0.56 >More info 0.13 >More info WT Dark Dark whole seedling Original data GEO bulk
740 spx1 spx2 no Pi 0.65 >More info 0.04 >More info WT no Pi seedlings Original data
741 GA 120min 0.66 >More info 0.03 >More info CON120 GA 120 min. root tips Original data GEO bulk
742 Ts5 roots 2hr KNO3 nitrogen 0.55 >More info 0.14 >More info Col0 roots 2hr KNO3 nitrogen root Original data GEO bulk
743 WT 30μM phosphate 8 hours. -0.66 >More info -0.03 >More info WT control (not supplemented). Original data
744 msg2 -0.67 >More info -0.02 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
745 Col-0 6h NAA 0.65 >More info 0.04 >More info Col-0 6h MOCK Original data GEO bulk
746 Col BTH 0.02 >More info 0.67 >More info Col rosettes Original data GEO bulk
747 A. thaliana-A. halleri hybrid -0.51 >More info -0.18 >More info A. thaliana mature leaves before flowering Original data GEO bulk
748 QC pSCR 0h BL 0.57 >More info 0.12 >More info WR 35S 0h BL brassinosteroid root Original data
749 root callus inducing medium 24h -0.61 >More info -0.08 >More info root callus inducing medium 0 h 24 hours after incubating on callus inducing medium root explants Original data GEO bulk
750 T101A 10mM NH4NO3 -0.59 >More info -0.10 >More info col 10mM NH4NO3 Root Original data
751 root longitudinal zone-2 pH 4.6 0.08 >More info 0.61 >More info root longitudinal zone-2 pH 5.7 Original data GEO bulk
752 phr1 Shoot-Pi 0.68 >More info 0.00 >More info WT Root-Pi shoots Original data GEO bulk
753 chalazal endosperm 0.52 >More info 0.16 >More info Control for tissue data Original data GEO bulk
754 Mutant nph4-1_arf19-1 0.54 >More info 0.14 >More info Col Original data GEO bulk
755 ein3 eil1 0.66 >More info 0.02 >More info Col-0 mock Whole seedling Original data GEO bulk
756 Mutant hy5 (High Light) 0.51 >More info 0.17 >More info Col-0 (High Light) Original data GEO bulk
757 hy5 high light 0.51 >More info 0.17 >More info Col-O high light Original data GEO bulk
758 pnp1-1 3h +P 0.16 >More info 0.52 >More info WT 3h +P Full nutrient medium (+P) seedlings without roots Original data GEO bulk
759 agb1 gpa1 +ABA GC -0.05 >More info -0.63 >More info Col-0 +ABA GC Guard cells taken for mature leaves of five week-old plants Original data GEO bulk
760 Glyphosate EC50 0.17 >More info 0.51 >More info Carrier (Glyphosate) Original data GEO bulk
761 amiR-ETP1/2 0.59 >More info 0.09 >More info Col-0 air Original data GEO bulk
762 10min Reillumination Total RNA -0.70 >More info 0.02 >More info 1h Dark Total RNA 1 h darkness plus 10 min reillumination whole seedlings Original data GEO bulk
763 35:SUB1C -0.52 >More info -0.15 >More info WT whole seedling Original data GEO bulk
764 IPT8 mutant tZ 12h 0.54 >More info 0.13 >More info Control 12h 12 hours primary root tip (5 mm) Original data GEO bulk
765 QC pSCR(QC pSCRBRI1) 0h BL 0.50 >More info 0.17 >More info WR 35S 0h BL brassinosteroid root Original data
766 ein2 mutant roots mock -0.51 >More info -0.16 >More info roots mock Original data GEO bulk
767 CCA1-ox 6am non-polysomal 0.16 >More info 0.51 >More info WT 6am non-polysomal aerial part Original data
768 IAA7mII over-expressor IAA Treated -0.02 >More info 0.69 >More info empty vector IAA Treated Original data GEO bulk
769 seed germinating in countinuous light 1 h SL 0.51 >More info 0.15 >More info Control for tissue data seed Original data GEO bulk
770 KAN1 0.64 >More info 0.02 >More info Control for tissue data shoot apical meristem Original data GEO bulk
771 penta Pst DC3000 12hpi 0.54 >More info 0.12 >More info Laer Pst DC3000 12hpi leaf discs Original data GEO bulk
772 mp-B4149 mutant IAA 0.64 >More info 0.02 >More info GR-bdl IAA Original data GEO bulk
773 8h-DC3000 avrRpm1 0.13 >More info 0.53 >More info 8h-DC3000 leaves Original data GEO bulk
774 Atape2 low light 0.60 >More info 0.06 >More info Control for tissue data shoot apical meristem Original data GEO bulk
775 KAN1-GR 30min 0.57 >More info 0.09 >More info KAN1-GR 0min Original data GEO bulk
776 gai MeJA 1h -0.60 >More info -0.05 >More info Laer MeJA 1h leaf discs Original data GEO bulk
777 HairpinZ 4 h (leaf) 0.68 >More info -0.03 >More info Mock 4 h (leaf) Original data Elicitor treatments
778 sng1 UV 0.55 >More info 0.10 >More info UV aerial region Original data GEO bulk
779 cys-c1 leaf 0.53 >More info 0.12 >More info Leaf-WT leaves Original data GEO bulk
780 4x -0.54 >More info -0.11 >More info 2x two week old seedlings Original data
781 HDG4 0.60 >More info 0.05 >More info Control for tissue data shoot apical meristem Original data GEO bulk
782 WT in -N 0.11 >More info 0.54 >More info WT in FN nitrogen depletion whole seedling Original data GEO bulk
783 vte1-1 3d vernalization -0.70 >More info 0.05 >More info WT 3d vernalization Original data GEO bulk
784 Col light-dark EtOH 0.57 >More info 0.08 >More info Col light-dark Mock 2.5% ethanol Original data GEO bulk
785 Mutant iaa17-6 -0.54 >More info -0.10 >More info Col Original data GEO bulk
786 clf-28 -0.64 >More info -0.00 >More info Col whole plant Original data GEO bulk
787 chalazal endosperm mature green 0.52 >More info 0.12 >More info Control for tissue data chalazal endosperm captured by LCM Original data GEO bulk
788 root hypoxia pSHR 0.53 >More info 0.11 >More info root hypoxia total hypoxia root Original data GEO bulk
789 LAS 0.60 >More info 0.04 >More info Control for tissue data shoot apical meristem Original data GEO bulk
790 ALC Toc1 light-dark EtOH -0.50 >More info -0.14 >More info Col light-dark EtOH 2.5% ethanol Original data GEO bulk
791 pip3 At2g19270 TDNA 6h-1 0.53 >More info 0.11 >More info Col-0 whole plant Original data GEO bulk
792 Col-7 Sucrose -0.55 >More info -0.09 >More info col-7 Original data GEO bulk
793 3d old, both 10mM sucrose and 0.2µM SMX -0.64 >More info -0.00 >More info control Whole seedling Original data GEO bulk
794 ahg2-1abi1-1 0.54 >More info 0.10 >More info WT (Col) control Original data GEO bulk
795 chl1-5 10mM NH4NO3 -0.51 >More info -0.13 >More info col 10mM NH4NO3 Root Original data
796 micropylar endosperm mature green 0.56 >More info 0.08 >More info Control for tissue data micropylar endosperm captured by LCM Original data GEO bulk
797 shoot hypoxia pKAT1 0.54 >More info 0.10 >More info shoot hypoxia total Original data GEO bulk
798 elf3-7-23ºC -0.63 >More info -0.00 >More info WT-23ºC Original data GEO bulk
799 E2Fa-Dpa 0.57 >More info 0.06 >More info WT Original data GEO bulk
800 Full C2 T2 -0.54 >More info -0.08 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing full-length SCTV C2 Arabidopsis rosette leaves Original data
801 shoot control pCER5 0.59 >More info 0.03 >More info shoot control total Original data GEO bulk
802 Whole root - low pH 48H -0.58 >More info -0.04 >More info Whole root - Std pH 48H pH 4.6 for 48 hr Original data GEO bulk
803 entire vegetative rosette 0.65 >More info -0.03 >More info Col-0 Mock WL entire vegetative rosette Original data
804 AFB1 0h 0.50 >More info 0.12 >More info WT 0h Leaf tissue Original data GEO bulk
805 tfl1-1-23ºC 0.55 >More info 0.06 >More info WT-23ºC Original data GEO bulk
806 WT salt 12 h -0.54 >More info -0.07 >More info WT salt 0 h Salt with 120 mM NaCl for 24 h seedlings Original data GEO bulk
807 Petals stage15 0.50 >More info 0.11 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
808 rsl4 0.53 >More info 0.08 >More info Col-0 Control root Original data GEO bulk
809 seed coat 0.53 >More info 0.08 >More info Control for tissue data Original data GEO bulk
810 whole seeds heart stage 0.54 >More info 0.06 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
811 root cells epidermis 140mM NaCl 1 hour 0.53 >More info 0.07 >More info root cells epidermis standard 1 hour root cells epidermis Original data
812 Dark 40min pls UV-AB 5min 0.56 >More info 0.04 >More info Dark 45 min Original data Light treatments
813 root callus inducing medium 12 h -0.61 >More info 0.01 >More info root callus inducing medium 0 h 12 hours after incubating on callus inducing medium root explants Original data GEO bulk
814 Col-0 DCA 6d 0.64 >More info -0.04 >More info Col-0 MOCK 6d Original data GEO bulk
815 siliques WT hypoxia 0.59 >More info 0.01 >More info siliques WT control hypoxia silique Original data GEO bulk
816 ERF115OE roottip5days -0.57 >More info -0.03 >More info Col-0 roottip5days root tips Original data
817 IAA 0.5 h 0.60 >More info -0.00 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
818 swn-7 -0.54 >More info -0.05 >More info Col whole plant Original data GEO bulk
819 Seeds stage8 w/o siliques 0.51 >More info 0.08 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
820 csn4-1 mutant 0.59 >More info 0.00 >More info WT dark Original data GEO bulk
821 phyABCDE 4-day dark- 2 hours Rc50 0.63 >More info -0.04 >More info phyABCDE Dark 4-day dark growth followed by 2 hours of red light whole seedling Original data GEO bulk
822 root hypoxia pCO2 0.51 >More info 0.08 >More info root hypoxia total hypoxia root Original data GEO bulk
823 NAA 6h 0.55 >More info 0.03 >More info before treatment NAA root Original data GEO bulk
824 GR-REV 120min 0.67 >More info -0.09 >More info Col 120min Original data GEO bulk
825 LTN005-2 TSA 0.58 >More info -0.00 >More info LTN012-2 Mock Original data
826 peripheral endosperm mature green 0.50 >More info 0.08 >More info Control for tissue data peripherial endosperm captured by LCM Original data GEO bulk
827 SA Treated 0.50 >More info 0.08 >More info Water Original data GEO bulk
828 piffq 3d WL -0.62 >More info 0.04 >More info WT 3d WL whole seedling Original data GEO bulk
829 ANAC102 over-expressor 0.08 >More info 0.50 >More info C24 Original data GEO bulk
830 HAP5-triple-mutant 0.51 >More info 0.06 >More info Col control above-ground whole plant Original data GEO bulk
831 phyABDE Dark 0.57 >More info 0.00 >More info WT Dark Dark whole seedling Original data GEO bulk
832 Control KNO3 roots - 8hours 0.57 >More info -0.00 >More info Control KCl roots - 8hours 5mM KNO3 on both sides for 8 hours roots Original data GEO bulk
833 FLIGHT BRIC G PDFU-112 seedlings 0.62 >More info -0.05 >More info GROUNDCONTROL BRIC G PDFU-135 seedlings seedling Original data
834 oas-a1.1 shoot -0.60 >More info 0.03 >More info WT-Untreated Shoot Original data GEO bulk
835 frb1 mutant 0.55 >More info 0.01 >More info WT whole seedling Original data GEO bulk
836 hepta mutant (higher order mutant) 0.50 >More info 0.06 >More info col control (higher order mutant) Original data GEO bulk
837 tga1 tga4 2h KNO3 0.66 >More info -0.11 >More info Col 0 2h KNO3 5 mM KNO3 root Original data GEO bulk
838 JMJ24 knockout -0.53 >More info -0.02 >More info WT Original data GEO bulk
839 35S:LOB-GR DEX -0.60 >More info 0.06 >More info Col DEX dexamethasone seedling Original data GEO bulk
840 10mM sucrose -0.56 >More info 0.02 >More info control Whole seedling Original data GEO bulk
841 whole seeds mature green 0.52 >More info 0.02 >More info Control for tissue data whole seeds captured by LCM Original data GEO bulk
842 WT Seedling BL -0.03 >More info -0.51 >More info WT Seedling Dark Original data GEO bulk
843 0h ivd 0.58 >More info -0.04 >More info 0h wt Original data
844 T101D 10mM NH4NO3 -0.70 >More info 0.16 >More info col 10mM NH4NO3 Root Original data
845 in vivo pollen tube 0.59 >More info -0.06 >More info Control for tissue data pollen tube Original data GEO bulk
846 slr-1 0h NAA 0.51 >More info 0.02 >More info Col-0 0h NAA Original data GEO bulk
847 seedlings + TSA 0.55 >More info -0.02 >More info control seedlings 10-day old whole seedling Original data GEO bulk
848 35S:VND7-VP16-GR+CHX 0.03 >More info 0.50 >More info harboring empty vector+CHX 10mM cycloheximide (CHX) 6hrs whole seedlings Original data GEO bulk
849 Bay-0-3h IAA -0.52 >More info -0.00 >More info Bay-0-0h IAA whole plant Original data GEO bulk
850 Bud 0.60 >More info -0.08 >More info Control for tissue data pollen grains and tubes Original data
851 IPT8 induced 12h 0.55 >More info -0.03 >More info Control 12h 12 hours primary root tip (5 mm) Original data GEO bulk
852 L2.4 mutant 0.63 >More info -0.11 >More info Wt Original data GEO bulk
853 etiolated cop1 -0.56 >More info 0.04 >More info etiolated Col-0 whole seedlings Original data GEO bulk
854 Cauline leaves 0.51 >More info 0.01 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
855 axr2 -0.56 >More info 0.05 >More info WT-mock mock dark-grown seedlings Original data GEO bulk
856 Col PSTDC3000 24h 0.64 >More info -0.13 >More info Col 0h Leaf Original data GEO bulk
857 til1-1 37C 0.59 >More info -0.08 >More info Col-0 37C Original data GEO bulk
858 pGL1::GL1-GR Dex 24hours 0.52 >More info -0.01 >More info pGL1::GL1-GR mock 24hours Original data GEO bulk
859 Brz220 12 h 0.50 >More info 0.01 >More info Mock 12 h Original data Effect of brassinosteroid inhibitors on seedlings
860 erf115ko roottip5days -0.51 >More info -0.00 >More info Col-0 roottip5days root tips Original data
861 PBZ -0.03 >More info 0.54 >More info none PBZ Rosette Original data GEO bulk
862 gpa1-4/agb1-2 clean-air 3h 0.53 >More info -0.03 >More info Col clean-air 3h clean-air Original data GEO bulk
863 sfr3 control 0.52 >More info -0.02 >More info WT control All aerial tissue Original data GEO bulk
864 eto1-4 +303 0.51 >More info -0.01 >More info eto1-4 whole seedling Original data GEO bulk
865 FAMA induced 48h -0.53 >More info 0.04 >More info control 48h Whole seedling Original data GEO bulk
866 2d dark-grown pif1pif3pif4pif5 (pifq) mutant/1 hr
red light 		0.67 >More info -0.18 >More info 2d dark-grown WT(Col-0)/1 hr red light Original data GEO bulk
867 OsTOP6A3 ox -0.53 >More info 0.04 >More info WT Original data GEO bulk
868 ein2 mutant roots IAA 0.51 >More info -0.02 >More info roots ethylene Original data GEO bulk
869 Mutant iaa5_6_19 -0.65 >More info 0.16 >More info Col Original data GEO bulk
870 epiF3 -0.52 >More info 0.04 >More info WT Col-0 aerial part Original data
871 Stem 2ndinternode 0.51 >More info -0.03 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
872 Lip0 UV 0.69 >More info -0.21 >More info Lip0 mock UV seedling Original data
873 TAMM27 roots 2hr KCl control 0.62 >More info -0.14 >More info Col0 roots 2hr KCl control root Original data GEO bulk
874 ACC 3 h -0.11 >More info 0.59 >More info Mock 3 h Original data Basic hormone treatment of seedlings
875 GRX-overexpression seedlings IAA 0.04 >More info -0.51 >More info WT seedlings IAA Seedlings Original data GEO bulk
876 P. infestans 6 h (leaf) 0.62 >More info -0.15 >More info Mock 6 h (leaf) Original data Elicitor treatments
877 erf5 erf6 -0.57 >More info 0.10 >More info WT+water water seedlings Original data GEO bulk
878 pkl Mutant mock -0.50 >More info 0.03 >More info WT mock Original data GEO bulk
879 root - 08% oxygen - 30min -0.22 >More info 0.69 >More info root - 21% oxygen - 30min Original data GEO bulk
880 Sha-3h IAA -0.52 >More info 0.06 >More info Sha-0h IAA whole plant Original data GEO bulk
881 Col-O low light -0.57 >More info 0.11 >More info Col-O bule light Original data GEO bulk
882 bri1-116 -0.27 >More info 0.73 >More info Col seedling Original data GEO bulk
883 Cotyledons 0.55 >More info -0.10 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
884 4d red light grown hmr-22 seedlings 0.66 >More info -0.21 >More info 4d red light grown WT(Col-0) seedlings Original data
885 4h light (+Lincomycin) -0.54 >More info 0.09 >More info 4h light (-Lincomycin) seedlings Original data GEO bulk
886 Rosette leaf No2 0.52 >More info -0.07 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
887 Cambium 5 days NAA -0.06 >More info 0.51 >More info Stem tissue T0 Interfascicular cambium induced after 5 days NAA in vitro treatment laser capture microdissection Original data GEO bulk
888 AsAKiin11 T3 -0.62 >More info 0.17 >More info C2 C2del and (As)AKiin11 control T3 three days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
889 ABA 0.5 h 0.61 >More info -0.16 >More info Mock 0.5 h Original data Basic hormone treatment of seedlings
890 spx1 spx2 resupplied Pi 4h -0.68 >More info 0.24 >More info WT resupplied Pi 4h seedlings Original data
891 Pst-DC3000(hrpA)-4hpi -0.52 >More info 0.08 >More info Pst-DC3000-4hpi Original data GEO bulk
892 atmyc2 cop1 Seedling Dark 0.61 >More info -0.17 >More info WT Seedling Dark Original data GEO bulk
893 Laer Flg22(Agrobacterium) 1h -0.57 >More info 0.13 >More info Laer Control leaf discs Original data GEO bulk
894 FarRed Light 45min 0.28 >More info -0.72 >More info White Light 45min Original data Light treatments
895 WT seedlings NaCl 0.61 >More info -0.18 >More info WT seedlings control Seedlings Original data GEO bulk
896 sfr2 cold -0.57 >More info 0.14 >More info WT cold All aerial tissue Original data GEO bulk
897 Distal half (leaf7) 0.51 >More info -0.09 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
898 naxillin 3h -0.55 >More info 0.13 >More info before treatment naxillin root Original data GEO bulk
899 arp6-10 2h 27 -degree-C -0.50 >More info 0.08 >More info Col-0 2h at 27 ºC whole seedlings Original data GEO bulk
900 flower-buds 0.53 >More info -0.12 >More info Control for tissue data Original data GEO bulk
901 rdr1-1 -0.52 >More info 0.11 >More info Col-0 Original data GEO bulk
902 0h light (+Lincomycin) -0.54 >More info 0.13 >More info 0h light (-Lincomycin) seedlings Original data GEO bulk
903 bZIP TDNA mutant -0.50 >More info 0.09 >More info Col-WT mature pollen Original data GEO bulk
904 mutant-line348 -0.57 >More info 0.16 >More info WT-control whole plant Original data GEO bulk
905 hsfa2 KO heat shock 0.58 >More info -0.17 >More info WT (Col-0) heat shock whole seedling Original data GEO bulk
906 bri1-5 mutant -0.54 >More info 0.14 >More info WT 7 day-old whole seedlings Original data
907 myb50 xylem 0.52 >More info -0.12 >More info wt xylem xylem Original data GEO bulk
908 WT cold 12 h 0.53 >More info -0.14 >More info WT cold 0h GSM955987 seedlings Original data GEO bulk
909 erf104-ko Flg22 4h -0.28 >More info 0.67 >More info erf104-ko H2O 4h Original data GEO bulk
910 ABA 1 h 0.50 >More info -0.12 >More info Mock 1 h Original data Basic hormone treatment of seedlings
911 mutant acs2C (single mutant) -0.50 >More info 0.13 >More info col control (single mutant) Original data GEO bulk
912 ein3 eil1 JA 0.61 >More info -0.24 >More info JA Whole seedling Original data GEO bulk
913 eto1-4 +370 0.59 >More info -0.22 >More info eto1-4 whole seedling Original data GEO bulk
914 PRR5-VP 12h light on 0.58 >More info -0.22 >More info WT 12h light on whole plant Original data GEO bulk
915 NAA -AA -0.56 >More info 0.21 >More info B5 -AA B5 media supplemented with 4.5 µM NAA and untreated Original data
916 gpa1-4/agb1-2 ozone 2d 0.28 >More info -0.63 >More info Col ozone 2d ozone Original data GEO bulk
917 2d dark-grown pif1pif3pif4pif5 (pifq) mutant 0.54 >More info -0.21 >More info 2d dark-grown WT seedling Original data GEO bulk
918 0h hml 0.62 >More info -0.29 >More info 0h wt Original data
919 ubc13A-es 0.51 >More info -0.18 >More info Col-es root Original data GEO bulk
920 Shoot apex vegetative &Young leaves 0.51 >More info -0.19 >More info Control for tissue data Original data Developmental series; organs / tissues at different ages
921 sfr6 cold -0.19 >More info 0.51 >More info WT cold All aerial tissue Original data GEO bulk
922 ein2 1% sucrose 14-day-old 0.60 >More info -0.28 >More info Col-0 1% sucrose 14-day-old Original data GEO bulk
923 ABA JA 24h -0.22 >More info 0.53 >More info EtOH 24h 24hr Original data GEO bulk
924 root - 08% oxygen - 48h -0.75 >More info 0.44 >More info root - 21% oxygen - 48h Original data GEO bulk
925 Aerobic prt6 -0.19 >More info 0.50 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
926 ein2-1 +Pep2 2h 0.52 >More info -0.22 >More info WT +Pep2 2h Pep2 Original data GEO bulk
927 chl1-5 Nitrate 0.5h 0.58 >More info -0.28 >More info WT Nitrate 0.5h Original data GEO bulk
928 phr1 phl1 Root-Pi -0.50 >More info 0.23 >More info WT Shoot+Pi roots Original data GEO bulk
929 1h light (+Lincomycin) -0.51 >More info 0.26 >More info 1h light (-Lincomycin) seedlings Original data GEO bulk
930 WT NAA 2h 0.33 >More info -0.57 >More info WT 0h Leaf tissue Original data GEO bulk
931 WT NAA 1h 0.63 >More info -0.40 >More info WT 0h Leaf tissue Original data GEO bulk
932 Aerobic e1 ate2 -0.38 >More info 0.59 >More info Aerobic Col-0 aerobic (normal) conditions seedlings Original data GEO bulk
933 pepr1-1 Pepr2-3 untreated -0.64 >More info 0.45 >More info WT untreated untreated Original data GEO bulk
934 roots ethylene -0.50 >More info 0.35 >More info roots air Original data GEO bulk
935 AsAKiin11 T2 -0.63 >More info 0.50 >More info C2 C2del and (As)AKiin11 control T2 two days post infusion with Agrobacterium containing antisense (As)AKiin11 Arabidopsis rosette leaves Original data
936 root - 04% oxygen - 30min -0.57 >More info 0.44 >More info root - 21% oxygen - 30min Original data GEO bulk
937 eto1-4 +393 0.53 >More info -0.47 >More info eto1-4 whole seedling Original data GEO bulk
938 0.5h light (+Lincomycin) -0.50 >More info 0.45 >More info 0.5h light (-Lincomycin) seedlings Original data GEO bulk
939 root - 04% oxygen - 2h -0.65 >More info 0.70 >More info root - 21% oxygen - 2h Original data GEO bulk
940 pif4pif5 mut dark 0.50 >More info -0.48 >More info WT dark Original data GEO bulk
941 root - 04% oxygen - 48h -0.50 >More info 0.52 >More info root - 21% oxygen - 48h Original data GEO bulk
942 root - 08% oxygen - 2h -0.63 >More info 0.63 >More info root - 21% oxygen - 2h Original data GEO bulk